Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c07690

Experiment: NAG (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c07670 and PGA1_c07680 are separated by 168 nucleotidesPGA1_c07680 and PGA1_c07690 are separated by 54 nucleotidesPGA1_c07690 and PGA1_c07700 overlap by 1 nucleotidesPGA1_c07700 and PGA1_c07710 overlap by 4 nucleotides PGA1_c07670: PGA1_c07670 - two component regulatory sytem, at 794,891 to 796,633 _c07670 PGA1_c07680: PGA1_c07680 - N-acyl-L-homoserine lactone synthetase, at 796,802 to 797,410 _c07680 PGA1_c07690: PGA1_c07690 - (S)-mandelate dehydrogenase MdlB, at 797,465 to 798,556 _c07690 PGA1_c07700: PGA1_c07700 - putative sulfopyruvate decarboxylase subunit beta, at 798,556 to 799,110 _c07700 PGA1_c07710: PGA1_c07710 - putative sulfopyruvate decarboxylase subunit alpha, at 799,107 to 799,613 _c07710 Position (kb) 797 798 799Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 796.473 kb on - strandat 796.478 kb on + strandat 796.484 kb on + strandat 796.503 kb on - strandat 796.534 kb on + strandat 796.555 kb on + strandat 796.555 kb on + strandat 796.555 kb on + strandat 796.563 kb on - strandat 796.563 kb on - strandat 796.605 kb on + strandat 796.613 kb on - strandat 796.647 kb on + strandat 796.655 kb on - strandat 796.665 kb on - strandat 796.776 kb on + strandat 796.776 kb on + strandat 796.784 kb on - strandat 796.789 kb on + strandat 796.792 kb on - strandat 796.794 kb on + strandat 796.794 kb on + strandat 796.797 kb on - strandat 796.802 kb on - strandat 796.802 kb on - strandat 796.802 kb on - strandat 796.830 kb on + strandat 796.838 kb on - strandat 796.840 kb on + strandat 796.840 kb on + strandat 796.842 kb on + strandat 796.850 kb on - strandat 796.850 kb on - strandat 796.850 kb on - strandat 796.850 kb on - strandat 796.857 kb on - strandat 796.857 kb on - strandat 796.861 kb on + strandat 796.867 kb on - strand, within PGA1_c07680at 796.884 kb on + strand, within PGA1_c07680at 796.884 kb on - strand, within PGA1_c07680at 796.910 kb on - strand, within PGA1_c07680at 796.911 kb on + strand, within PGA1_c07680at 796.911 kb on + strand, within PGA1_c07680at 796.940 kb on - strand, within PGA1_c07680at 796.950 kb on - strand, within PGA1_c07680at 796.963 kb on + strand, within PGA1_c07680at 796.971 kb on - strand, within PGA1_c07680at 797.029 kb on + strand, within PGA1_c07680at 797.029 kb on + strand, within PGA1_c07680at 797.029 kb on + strand, within PGA1_c07680at 797.029 kb on + strand, within PGA1_c07680at 797.029 kb on + strand, within PGA1_c07680at 797.029 kb on + strand, within PGA1_c07680at 797.029 kb on + strand, within PGA1_c07680at 797.029 kb on + strand, within PGA1_c07680at 797.029 kb on + strand, within PGA1_c07680at 797.029 kb on + strand, within PGA1_c07680at 797.037 kb on - strand, within PGA1_c07680at 797.037 kb on - strand, within PGA1_c07680at 797.037 kb on - strand, within PGA1_c07680at 797.037 kb on - strand, within PGA1_c07680at 797.037 kb on - strand, within PGA1_c07680at 797.043 kb on + strand, within PGA1_c07680at 797.043 kb on + strand, within PGA1_c07680at 797.043 kb on + strand, within PGA1_c07680at 797.043 kb on + strand, within PGA1_c07680at 797.043 kb on + strand, within PGA1_c07680at 797.043 kb on + strand, within PGA1_c07680at 797.043 kb on + strand, within PGA1_c07680at 797.051 kb on - strand, within PGA1_c07680at 797.051 kb on - strand, within PGA1_c07680at 797.051 kb on - strand, within PGA1_c07680at 797.071 kb on - strand, within PGA1_c07680at 797.096 kb on + strand, within PGA1_c07680at 797.096 kb on + strand, within PGA1_c07680at 797.114 kb on + strand, within PGA1_c07680at 797.119 kb on - strand, within PGA1_c07680at 797.127 kb on - strand, within PGA1_c07680at 797.154 kb on - strand, within PGA1_c07680at 797.163 kb on + strand, within PGA1_c07680at 797.163 kb on + strand, within PGA1_c07680at 797.169 kb on + strand, within PGA1_c07680at 797.169 kb on - strand, within PGA1_c07680at 797.181 kb on + strand, within PGA1_c07680at 797.181 kb on + strand, within PGA1_c07680at 797.181 kb on + strand, within PGA1_c07680at 797.196 kb on + strand, within PGA1_c07680at 797.206 kb on - strand, within PGA1_c07680at 797.206 kb on - strand, within PGA1_c07680at 797.206 kb on - strand, within PGA1_c07680at 797.215 kb on + strand, within PGA1_c07680at 797.215 kb on + strand, within PGA1_c07680at 797.215 kb on + strand, within PGA1_c07680at 797.215 kb on + strand, within PGA1_c07680at 797.215 kb on + strand, within PGA1_c07680at 797.215 kb on + strand, within PGA1_c07680at 797.215 kb on + strand, within PGA1_c07680at 797.215 kb on + strand, within PGA1_c07680at 797.215 kb on + strand, within PGA1_c07680at 797.215 kb on + strand, within PGA1_c07680at 797.219 kb on - strand, within PGA1_c07680at 797.223 kb on - strand, within PGA1_c07680at 797.223 kb on - strand, within PGA1_c07680at 797.223 kb on - strand, within PGA1_c07680at 797.274 kb on - strand, within PGA1_c07680at 797.274 kb on - strand, within PGA1_c07680at 797.292 kb on + strand, within PGA1_c07680at 797.300 kb on - strand, within PGA1_c07680at 797.321 kb on - strand, within PGA1_c07680at 797.325 kb on + strand, within PGA1_c07680at 797.333 kb on - strand, within PGA1_c07680at 797.370 kb on - strandat 797.405 kb on + strandat 797.405 kb on + strandat 797.405 kb on + strandat 797.413 kb on - strandat 797.413 kb on - strandat 797.413 kb on - strandat 797.464 kb on + strandat 797.469 kb on - strandat 797.469 kb on - strandat 797.498 kb on - strandat 797.512 kb on + strandat 797.512 kb on + strandat 797.512 kb on + strandat 797.529 kb on + strandat 797.529 kb on + strandat 797.529 kb on + strandat 797.534 kb on + strandat 797.537 kb on - strandat 797.539 kb on - strandat 797.550 kb on + strandat 797.566 kb on - strandat 797.581 kb on + strand, within PGA1_c07690at 797.605 kb on - strand, within PGA1_c07690at 797.624 kb on - strand, within PGA1_c07690at 797.641 kb on - strand, within PGA1_c07690at 797.738 kb on - strand, within PGA1_c07690at 797.781 kb on + strand, within PGA1_c07690at 797.791 kb on + strand, within PGA1_c07690at 797.949 kb on + strand, within PGA1_c07690at 797.951 kb on - strand, within PGA1_c07690at 797.957 kb on - strand, within PGA1_c07690at 797.957 kb on - strand, within PGA1_c07690at 797.965 kb on + strand, within PGA1_c07690at 797.965 kb on + strand, within PGA1_c07690at 797.965 kb on + strand, within PGA1_c07690at 797.973 kb on - strand, within PGA1_c07690at 797.988 kb on - strand, within PGA1_c07690at 798.037 kb on - strand, within PGA1_c07690at 798.038 kb on + strand, within PGA1_c07690at 798.078 kb on + strand, within PGA1_c07690at 798.138 kb on - strand, within PGA1_c07690at 798.148 kb on + strand, within PGA1_c07690at 798.182 kb on + strand, within PGA1_c07690at 798.184 kb on - strand, within PGA1_c07690at 798.184 kb on - strand, within PGA1_c07690at 798.190 kb on - strand, within PGA1_c07690at 798.305 kb on + strand, within PGA1_c07690at 798.364 kb on + strand, within PGA1_c07690at 798.419 kb on + strand, within PGA1_c07690at 798.419 kb on + strand, within PGA1_c07690at 798.427 kb on - strand, within PGA1_c07690at 798.434 kb on + strand, within PGA1_c07690at 798.434 kb on + strand, within PGA1_c07690at 798.440 kb on - strand, within PGA1_c07690at 798.450 kb on - strandat 798.452 kb on - strandat 798.495 kb on - strandat 798.497 kb on - strandat 798.562 kb on + strandat 798.567 kb on - strandat 798.659 kb on - strand, within PGA1_c07700at 798.703 kb on - strand, within PGA1_c07700at 798.738 kb on - strand, within PGA1_c07700at 798.782 kb on - strand, within PGA1_c07700at 798.786 kb on - strand, within PGA1_c07700at 798.842 kb on - strand, within PGA1_c07700at 798.886 kb on + strand, within PGA1_c07700at 798.891 kb on + strand, within PGA1_c07700at 798.946 kb on + strand, within PGA1_c07700at 798.958 kb on + strand, within PGA1_c07700at 799.023 kb on + strand, within PGA1_c07700at 799.023 kb on + strand, within PGA1_c07700at 799.023 kb on + strand, within PGA1_c07700at 799.023 kb on + strand, within PGA1_c07700at 799.031 kb on - strand, within PGA1_c07700at 799.064 kb on - strandat 799.066 kb on + strandat 799.151 kb on - strandat 799.159 kb on + strand, within PGA1_c07710at 799.376 kb on + strand, within PGA1_c07710at 799.455 kb on + strand, within PGA1_c07710at 799.468 kb on + strand, within PGA1_c07710

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG (C)
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796,473 - +0.6
796,478 + +0.1
796,484 + +3.4
796,503 - -0.4
796,534 + -0.6
796,555 + -1.2
796,555 + -0.2
796,555 + +0.5
796,563 - -1.2
796,563 - +2.9
796,605 + -1.4
796,613 - -2.9
796,647 + -0.4
796,655 - -2.0
796,665 - -2.6
796,776 + -2.0
796,776 + +1.6
796,784 - +2.8
796,789 + +2.7
796,792 - +1.7
796,794 + -1.4
796,794 + +1.1
796,797 - -0.8
796,802 - -0.6
796,802 - -2.0
796,802 - +0.2
796,830 + +0.7
796,838 - -2.8
796,840 + -2.4
796,840 + +0.5
796,842 + +1.9
796,850 - +2.7
796,850 - +0.5
796,850 - -0.9
796,850 - +2.5
796,857 - +0.9
796,857 - +0.9
796,861 + +0.7
796,867 - PGA1_c07680 0.11 -0.2
796,884 + PGA1_c07680 0.13 -2.2
796,884 - PGA1_c07680 0.13 -1.7
796,910 - PGA1_c07680 0.18 +0.6
796,911 + PGA1_c07680 0.18 +1.4
796,911 + PGA1_c07680 0.18 +0.6
796,940 - PGA1_c07680 0.23 -0.4
796,950 - PGA1_c07680 0.24 +1.4
796,963 + PGA1_c07680 0.26 -1.4
796,971 - PGA1_c07680 0.28 -0.3
797,029 + PGA1_c07680 0.37 +1.3
797,029 + PGA1_c07680 0.37 -0.5
797,029 + PGA1_c07680 0.37 +1.3
797,029 + PGA1_c07680 0.37 +0.4
797,029 + PGA1_c07680 0.37 +0.6
797,029 + PGA1_c07680 0.37 -2.9
797,029 + PGA1_c07680 0.37 +1.4
797,029 + PGA1_c07680 0.37 -1.9
797,029 + PGA1_c07680 0.37 +1.6
797,029 + PGA1_c07680 0.37 -2.9
797,037 - PGA1_c07680 0.39 -2.0
797,037 - PGA1_c07680 0.39 +1.2
797,037 - PGA1_c07680 0.39 +2.1
797,037 - PGA1_c07680 0.39 -0.9
797,037 - PGA1_c07680 0.39 +0.0
797,043 + PGA1_c07680 0.40 +1.7
797,043 + PGA1_c07680 0.40 -1.9
797,043 + PGA1_c07680 0.40 +1.6
797,043 + PGA1_c07680 0.40 +0.3
797,043 + PGA1_c07680 0.40 +0.1
797,043 + PGA1_c07680 0.40 -1.4
797,043 + PGA1_c07680 0.40 +2.6
797,051 - PGA1_c07680 0.41 +1.1
797,051 - PGA1_c07680 0.41 -2.2
797,051 - PGA1_c07680 0.41 -1.2
797,071 - PGA1_c07680 0.44 +1.4
797,096 + PGA1_c07680 0.48 +1.1
797,096 + PGA1_c07680 0.48 -0.2
797,114 + PGA1_c07680 0.51 -2.3
797,119 - PGA1_c07680 0.52 +0.8
797,127 - PGA1_c07680 0.53 -0.9
797,154 - PGA1_c07680 0.58 +1.3
797,163 + PGA1_c07680 0.59 +0.1
797,163 + PGA1_c07680 0.59 +0.5
797,169 + PGA1_c07680 0.60 -1.9
797,169 - PGA1_c07680 0.60 +2.5
797,181 + PGA1_c07680 0.62 -2.6
797,181 + PGA1_c07680 0.62 +0.1
797,181 + PGA1_c07680 0.62 +0.1
797,196 + PGA1_c07680 0.65 -0.2
797,206 - PGA1_c07680 0.66 -0.4
797,206 - PGA1_c07680 0.66 +0.4
797,206 - PGA1_c07680 0.66 +1.4
797,215 + PGA1_c07680 0.68 -1.7
797,215 + PGA1_c07680 0.68 +0.3
797,215 + PGA1_c07680 0.68 +0.8
797,215 + PGA1_c07680 0.68 +1.6
797,215 + PGA1_c07680 0.68 +0.3
797,215 + PGA1_c07680 0.68 +1.1
797,215 + PGA1_c07680 0.68 +1.1
797,215 + PGA1_c07680 0.68 -0.4
797,215 + PGA1_c07680 0.68 +0.1
797,215 + PGA1_c07680 0.68 +1.5
797,219 - PGA1_c07680 0.68 -0.9
797,223 - PGA1_c07680 0.69 -2.5
797,223 - PGA1_c07680 0.69 +2.1
797,223 - PGA1_c07680 0.69 -1.2
797,274 - PGA1_c07680 0.78 -0.9
797,274 - PGA1_c07680 0.78 -2.3
797,292 + PGA1_c07680 0.80 -0.4
797,300 - PGA1_c07680 0.82 +1.5
797,321 - PGA1_c07680 0.85 -2.3
797,325 + PGA1_c07680 0.86 -2.3
797,333 - PGA1_c07680 0.87 +1.3
797,370 - +1.2
797,405 + +0.0
797,405 + -0.9
797,405 + +0.6
797,413 - -2.6
797,413 - -0.6
797,413 - -1.9
797,464 + +3.7
797,469 - +0.0
797,469 - +1.8
797,498 - -2.3
797,512 + -1.4
797,512 + +2.8
797,512 + +0.0
797,529 + +1.9
797,529 + +3.4
797,529 + -1.9
797,534 + +1.3
797,537 - -2.3
797,539 - -0.4
797,550 + +1.7
797,566 - -2.0
797,581 + PGA1_c07690 0.11 -1.2
797,605 - PGA1_c07690 0.13 +0.3
797,624 - PGA1_c07690 0.15 +0.5
797,641 - PGA1_c07690 0.16 +3.1
797,738 - PGA1_c07690 0.25 +0.1
797,781 + PGA1_c07690 0.29 +1.0
797,791 + PGA1_c07690 0.30 +1.6
797,949 + PGA1_c07690 0.44 +2.6
797,951 - PGA1_c07690 0.45 +1.1
797,957 - PGA1_c07690 0.45 -1.4
797,957 - PGA1_c07690 0.45 +2.3
797,965 + PGA1_c07690 0.46 -0.4
797,965 + PGA1_c07690 0.46 -1.0
797,965 + PGA1_c07690 0.46 +0.4
797,973 - PGA1_c07690 0.47 +0.1
797,988 - PGA1_c07690 0.48 -0.4
798,037 - PGA1_c07690 0.52 +2.1
798,038 + PGA1_c07690 0.52 +1.3
798,078 + PGA1_c07690 0.56 +0.8
798,138 - PGA1_c07690 0.62 +1.7
798,148 + PGA1_c07690 0.63 +0.1
798,182 + PGA1_c07690 0.66 +0.1
798,184 - PGA1_c07690 0.66 +1.1
798,184 - PGA1_c07690 0.66 -2.2
798,190 - PGA1_c07690 0.66 -2.8
798,305 + PGA1_c07690 0.77 +1.7
798,364 + PGA1_c07690 0.82 +3.7
798,419 + PGA1_c07690 0.87 +2.3
798,419 + PGA1_c07690 0.87 +1.3
798,427 - PGA1_c07690 0.88 +1.4
798,434 + PGA1_c07690 0.89 +2.0
798,434 + PGA1_c07690 0.89 +0.3
798,440 - PGA1_c07690 0.89 -1.7
798,450 - +1.1
798,452 - -1.9
798,495 - -2.2
798,497 - +0.4
798,562 + +2.1
798,567 - +1.0
798,659 - PGA1_c07700 0.19 +0.7
798,703 - PGA1_c07700 0.26 +2.1
798,738 - PGA1_c07700 0.33 +0.1
798,782 - PGA1_c07700 0.41 +2.7
798,786 - PGA1_c07700 0.41 +1.4
798,842 - PGA1_c07700 0.52 +1.8
798,886 + PGA1_c07700 0.59 -0.4
798,891 + PGA1_c07700 0.60 +1.1
798,946 + PGA1_c07700 0.70 +0.4
798,958 + PGA1_c07700 0.72 -1.7
799,023 + PGA1_c07700 0.84 -1.2
799,023 + PGA1_c07700 0.84 +0.8
799,023 + PGA1_c07700 0.84 +0.5
799,023 + PGA1_c07700 0.84 -1.4
799,031 - PGA1_c07700 0.86 +0.6
799,064 - +1.1
799,066 + +1.6
799,151 - +0.8
799,159 + PGA1_c07710 0.10 -1.2
799,376 + PGA1_c07710 0.53 +0.4
799,455 + PGA1_c07710 0.69 +1.1
799,468 + PGA1_c07710 0.71 +2.6

Or see this region's nucleotide sequence