Experiment: NAG (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c07650 and PGA1_c07660 are separated by 378 nucleotides PGA1_c07660 and PGA1_c07670 are separated by 438 nucleotides
PGA1_c07650: PGA1_c07650 - hypothetical protein, at 793,009 to 793,998
_c07650
PGA1_c07660: PGA1_c07660 - tRNA-Thr, at 794,377 to 794,452
_c07660
PGA1_c07670: PGA1_c07670 - two component regulatory sytem, at 794,891 to 796,633
_c07670
Position (kb) 794
795 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 793.419 kb on + strand, within PGA1_c07650 at 793.419 kb on + strand, within PGA1_c07650 at 793.419 kb on + strand, within PGA1_c07650 at 793.427 kb on - strand, within PGA1_c07650 at 793.446 kb on - strand, within PGA1_c07650 at 793.493 kb on + strand, within PGA1_c07650 at 793.503 kb on + strand, within PGA1_c07650 at 793.511 kb on - strand, within PGA1_c07650 at 793.511 kb on - strand, within PGA1_c07650 at 793.511 kb on - strand, within PGA1_c07650 at 793.511 kb on - strand, within PGA1_c07650 at 793.511 kb on - strand, within PGA1_c07650 at 793.511 kb on - strand, within PGA1_c07650 at 793.553 kb on - strand, within PGA1_c07650 at 793.566 kb on + strand, within PGA1_c07650 at 793.566 kb on + strand, within PGA1_c07650 at 793.566 kb on + strand, within PGA1_c07650 at 793.659 kb on + strand, within PGA1_c07650 at 793.703 kb on + strand, within PGA1_c07650 at 793.733 kb on - strand, within PGA1_c07650 at 793.745 kb on + strand, within PGA1_c07650 at 793.753 kb on - strand, within PGA1_c07650 at 793.755 kb on + strand, within PGA1_c07650 at 793.758 kb on - strand, within PGA1_c07650 at 793.801 kb on + strand, within PGA1_c07650 at 793.855 kb on - strand, within PGA1_c07650 at 793.864 kb on - strand, within PGA1_c07650 at 793.882 kb on + strand, within PGA1_c07650 at 793.885 kb on - strand, within PGA1_c07650 at 793.911 kb on + strand at 793.923 kb on - strand at 793.952 kb on + strand at 793.952 kb on + strand at 794.023 kb on - strand at 794.037 kb on - strand at 794.042 kb on - strand at 794.051 kb on + strand at 794.056 kb on + strand at 794.056 kb on + strand at 794.056 kb on + strand at 794.095 kb on + strand at 794.113 kb on + strand at 794.121 kb on - strand at 794.149 kb on + strand at 794.149 kb on + strand at 794.149 kb on + strand at 794.149 kb on + strand at 794.149 kb on + strand at 794.149 kb on + strand at 794.157 kb on - strand at 794.157 kb on - strand at 794.157 kb on - strand at 794.157 kb on - strand at 794.157 kb on - strand at 794.157 kb on - strand at 794.157 kb on - strand at 794.157 kb on - strand at 794.157 kb on - strand at 794.252 kb on + strand at 794.253 kb on + strand at 794.552 kb on - strand at 794.568 kb on + strand at 794.638 kb on + strand at 794.638 kb on + strand at 794.638 kb on + strand at 794.638 kb on + strand at 794.638 kb on + strand at 794.646 kb on - strand at 794.652 kb on + strand at 794.662 kb on + strand at 794.665 kb on + strand at 794.695 kb on - strand at 794.731 kb on + strand at 794.752 kb on + strand at 794.760 kb on - strand at 794.804 kb on + strand at 794.804 kb on + strand at 794.835 kb on + strand at 794.835 kb on + strand at 794.835 kb on + strand at 794.835 kb on + strand at 794.835 kb on + strand at 794.835 kb on + strand at 794.835 kb on + strand at 794.835 kb on + strand at 794.843 kb on - strand at 794.843 kb on - strand at 794.843 kb on - strand at 794.843 kb on - strand at 794.843 kb on - strand at 794.843 kb on - strand at 794.843 kb on - strand at 794.857 kb on + strand at 794.857 kb on + strand at 794.865 kb on - strand at 794.865 kb on - strand at 794.865 kb on - strand at 794.865 kb on - strand at 794.865 kb on - strand at 794.954 kb on - strand at 794.954 kb on - strand at 794.955 kb on + strand at 794.960 kb on + strand at 794.968 kb on - strand at 794.982 kb on + strand at 794.988 kb on + strand at 794.992 kb on + strand at 794.995 kb on - strand at 794.996 kb on - strand at 794.996 kb on - strand at 794.996 kb on - strand at 795.028 kb on + strand at 795.028 kb on + strand at 795.069 kb on - strand, within PGA1_c07670 at 795.099 kb on + strand, within PGA1_c07670 at 795.105 kb on - strand, within PGA1_c07670 at 795.105 kb on - strand, within PGA1_c07670 at 795.133 kb on - strand, within PGA1_c07670 at 795.196 kb on + strand, within PGA1_c07670 at 795.205 kb on - strand, within PGA1_c07670 at 795.314 kb on - strand, within PGA1_c07670 at 795.314 kb on - strand, within PGA1_c07670 at 795.325 kb on + strand, within PGA1_c07670 at 795.346 kb on + strand, within PGA1_c07670 at 795.416 kb on + strand, within PGA1_c07670 at 795.421 kb on + strand, within PGA1_c07670 at 795.439 kb on - strand, within PGA1_c07670 at 795.447 kb on - strand, within PGA1_c07670
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (C) remove 793,419 + PGA1_c07650 0.41 +0.8 793,419 + PGA1_c07650 0.41 +0.9 793,419 + PGA1_c07650 0.41 +1.7 793,427 - PGA1_c07650 0.42 +1.3 793,446 - PGA1_c07650 0.44 +1.1 793,493 + PGA1_c07650 0.49 -0.6 793,503 + PGA1_c07650 0.50 +0.6 793,511 - PGA1_c07650 0.51 -1.9 793,511 - PGA1_c07650 0.51 +2.1 793,511 - PGA1_c07650 0.51 +1.6 793,511 - PGA1_c07650 0.51 +2.9 793,511 - PGA1_c07650 0.51 +1.6 793,511 - PGA1_c07650 0.51 -0.4 793,553 - PGA1_c07650 0.55 +1.0 793,566 + PGA1_c07650 0.56 -2.2 793,566 + PGA1_c07650 0.56 +0.6 793,566 + PGA1_c07650 0.56 -0.4 793,659 + PGA1_c07650 0.66 +1.7 793,703 + PGA1_c07650 0.70 -1.7 793,733 - PGA1_c07650 0.73 +0.5 793,745 + PGA1_c07650 0.74 +1.9 793,753 - PGA1_c07650 0.75 +0.6 793,755 + PGA1_c07650 0.75 +0.7 793,758 - PGA1_c07650 0.76 +2.4 793,801 + PGA1_c07650 0.80 +2.7 793,855 - PGA1_c07650 0.85 +1.7 793,864 - PGA1_c07650 0.86 +0.3 793,882 + PGA1_c07650 0.88 +1.6 793,885 - PGA1_c07650 0.88 +1.6 793,911 + +1.9 793,923 - +0.3 793,952 + -1.4 793,952 + -2.7 794,023 - +4.1 794,037 - +1.1 794,042 - -0.7 794,051 + -2.6 794,056 + -0.2 794,056 + +1.0 794,056 + -1.4 794,095 + -2.6 794,113 + +2.9 794,121 - +0.8 794,149 + +1.7 794,149 + -0.0 794,149 + +0.4 794,149 + -0.4 794,149 + +2.1 794,149 + +2.0 794,157 - +0.7 794,157 - +1.9 794,157 - -1.3 794,157 - -0.7 794,157 - +2.1 794,157 - +2.5 794,157 - -0.2 794,157 - +0.4 794,157 - +0.3 794,252 + +1.4 794,253 + +0.8 794,552 - +0.8 794,568 + -2.2 794,638 + -1.3 794,638 + +1.3 794,638 + -0.7 794,638 + -1.1 794,638 + +1.0 794,646 - +1.1 794,652 + +1.9 794,662 + +2.4 794,665 + +1.1 794,695 - +1.4 794,731 + +0.8 794,752 + +0.1 794,760 - +0.9 794,804 + -0.2 794,804 + -0.7 794,835 + +0.9 794,835 + +2.1 794,835 + -2.3 794,835 + +1.3 794,835 + -1.4 794,835 + +0.6 794,835 + +3.0 794,835 + +1.5 794,843 - +1.0 794,843 - +1.7 794,843 - -1.9 794,843 - -1.0 794,843 - +0.4 794,843 - -0.2 794,843 - +0.5 794,857 + +1.4 794,857 + +0.6 794,865 - +1.9 794,865 - -2.7 794,865 - -1.4 794,865 - -1.1 794,865 - +0.8 794,954 - -1.3 794,954 - -1.9 794,955 + -1.7 794,960 + +0.6 794,968 - +0.1 794,982 + -2.0 794,988 + -0.4 794,992 + +0.3 794,995 - -1.7 794,996 - -2.0 794,996 - -1.7 794,996 - +0.8 795,028 + -1.4 795,028 + +0.6 795,069 - PGA1_c07670 0.10 +1.6 795,099 + PGA1_c07670 0.12 +2.1 795,105 - PGA1_c07670 0.12 +1.8 795,105 - PGA1_c07670 0.12 +2.0 795,133 - PGA1_c07670 0.14 +0.5 795,196 + PGA1_c07670 0.17 -0.4 795,205 - PGA1_c07670 0.18 +0.2 795,314 - PGA1_c07670 0.24 +0.4 795,314 - PGA1_c07670 0.24 +0.3 795,325 + PGA1_c07670 0.25 -0.2 795,346 + PGA1_c07670 0.26 -1.2 795,416 + PGA1_c07670 0.30 -0.0 795,421 + PGA1_c07670 0.30 +3.1 795,439 - PGA1_c07670 0.31 -0.4 795,447 - PGA1_c07670 0.32 +0.1
Or see this region's nucleotide sequence