Experiment: NAG (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c06510 and PGA1_c06520 are separated by 135 nucleotides PGA1_c06520 and PGA1_c06530 are separated by 148 nucleotides PGA1_c06530 and PGA1_c06540 are separated by 50 nucleotides
PGA1_c06510: PGA1_c06510 - pyruvate, phosphate dikinase PpdK, at 667,531 to 670,131
_c06510
PGA1_c06520: PGA1_c06520 - cell wall hydrolase-like protein, at 670,267 to 670,950
_c06520
PGA1_c06530: PGA1_c06530 - dihydroneopterin aldolase-like protein, at 671,099 to 672,019
_c06530
PGA1_c06540: PGA1_c06540 - dihydropteroate synthase FolP, at 672,070 to 673,011
_c06540
Position (kb) 671
672
673 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 670.184 kb on - strand at 670.197 kb on + strand at 670.198 kb on - strand at 670.267 kb on - strand at 670.389 kb on + strand, within PGA1_c06520 at 670.389 kb on + strand, within PGA1_c06520 at 670.389 kb on + strand, within PGA1_c06520 at 670.389 kb on + strand, within PGA1_c06520 at 670.397 kb on - strand, within PGA1_c06520 at 670.397 kb on - strand, within PGA1_c06520 at 670.397 kb on - strand, within PGA1_c06520 at 670.397 kb on - strand, within PGA1_c06520 at 670.473 kb on + strand, within PGA1_c06520 at 670.473 kb on - strand, within PGA1_c06520 at 670.481 kb on - strand, within PGA1_c06520 at 670.509 kb on + strand, within PGA1_c06520 at 670.579 kb on - strand, within PGA1_c06520 at 670.722 kb on - strand, within PGA1_c06520 at 670.906 kb on - strand at 670.906 kb on - strand at 670.926 kb on + strand at 670.944 kb on - strand at 671.011 kb on + strand at 671.055 kb on + strand at 671.986 kb on - strand at 672.002 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (C) remove 670,184 - -2.3 670,197 + -2.3 670,198 - -0.3 670,267 - -0.8 670,389 + PGA1_c06520 0.18 -3.8 670,389 + PGA1_c06520 0.18 -0.0 670,389 + PGA1_c06520 0.18 -2.9 670,389 + PGA1_c06520 0.18 +0.7 670,397 - PGA1_c06520 0.19 +0.6 670,397 - PGA1_c06520 0.19 +1.9 670,397 - PGA1_c06520 0.19 -0.9 670,397 - PGA1_c06520 0.19 -0.6 670,473 + PGA1_c06520 0.30 +0.2 670,473 - PGA1_c06520 0.30 +0.2 670,481 - PGA1_c06520 0.31 +0.7 670,509 + PGA1_c06520 0.35 +0.3 670,579 - PGA1_c06520 0.46 +1.4 670,722 - PGA1_c06520 0.67 -0.6 670,906 - +0.1 670,906 - +1.4 670,926 + +1.2 670,944 - -2.5 671,011 + -2.6 671,055 + +4.5 671,986 - -3.4 672,002 + -2.3
Or see this region's nucleotide sequence