Experiment: NAG (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c06150 and PGA1_c06160 are separated by 150 nucleotides PGA1_c06160 and PGA1_c06170 are separated by 91 nucleotides PGA1_c06170 and PGA1_c06180 are separated by 354 nucleotides
PGA1_c06150: PGA1_c06150 - Flp pilus assembly protein CpaB-like protein, at 630,014 to 630,874
_c06150
PGA1_c06160: PGA1_c06160 - hypothetical protein, at 631,025 to 631,201
_c06160
PGA1_c06170: PGA1_c06170 - hypothetical protein, at 631,293 to 631,478
_c06170
PGA1_c06180: PGA1_c06180 - Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains), at 631,833 to 632,762
_c06180
Position (kb) 631
632 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 630.307 kb on + strand, within PGA1_c06150 at 630.322 kb on + strand, within PGA1_c06150 at 630.332 kb on + strand, within PGA1_c06150 at 630.337 kb on + strand, within PGA1_c06150 at 630.346 kb on - strand, within PGA1_c06150 at 630.413 kb on - strand, within PGA1_c06150 at 630.439 kb on + strand, within PGA1_c06150 at 630.439 kb on + strand, within PGA1_c06150 at 630.451 kb on + strand, within PGA1_c06150 at 630.485 kb on + strand, within PGA1_c06150 at 630.549 kb on - strand, within PGA1_c06150 at 630.566 kb on + strand, within PGA1_c06150 at 630.566 kb on + strand, within PGA1_c06150 at 630.571 kb on + strand, within PGA1_c06150 at 630.574 kb on - strand, within PGA1_c06150 at 630.574 kb on - strand, within PGA1_c06150 at 630.594 kb on - strand, within PGA1_c06150 at 630.674 kb on - strand, within PGA1_c06150 at 630.683 kb on + strand, within PGA1_c06150 at 630.683 kb on + strand, within PGA1_c06150 at 630.691 kb on - strand, within PGA1_c06150 at 630.707 kb on - strand, within PGA1_c06150 at 630.774 kb on + strand, within PGA1_c06150 at 630.830 kb on - strand at 630.835 kb on - strand at 630.863 kb on - strand at 630.863 kb on - strand at 630.884 kb on - strand at 630.890 kb on - strand at 630.961 kb on + strand at 630.963 kb on + strand at 631.018 kb on + strand at 631.021 kb on - strand at 631.026 kb on - strand at 631.044 kb on + strand, within PGA1_c06160 at 631.046 kb on + strand, within PGA1_c06160 at 631.085 kb on + strand, within PGA1_c06160 at 631.114 kb on - strand, within PGA1_c06160 at 631.147 kb on + strand, within PGA1_c06160 at 631.155 kb on - strand, within PGA1_c06160 at 631.155 kb on - strand, within PGA1_c06160 at 631.155 kb on - strand, within PGA1_c06160 at 631.194 kb on - strand at 631.215 kb on + strand at 631.280 kb on + strand at 631.315 kb on - strand, within PGA1_c06170 at 631.322 kb on + strand, within PGA1_c06170 at 631.330 kb on - strand, within PGA1_c06170 at 631.330 kb on - strand, within PGA1_c06170 at 631.330 kb on - strand, within PGA1_c06170 at 631.341 kb on + strand, within PGA1_c06170 at 631.389 kb on - strand, within PGA1_c06170 at 631.407 kb on + strand, within PGA1_c06170 at 631.412 kb on + strand, within PGA1_c06170 at 631.412 kb on + strand, within PGA1_c06170 at 631.420 kb on - strand, within PGA1_c06170 at 631.440 kb on + strand, within PGA1_c06170 at 631.478 kb on + strand at 631.480 kb on + strand at 631.486 kb on - strand at 631.488 kb on + strand at 631.488 kb on + strand at 631.496 kb on - strand at 631.539 kb on + strand at 631.544 kb on + strand at 631.544 kb on + strand at 631.544 kb on + strand at 631.544 kb on + strand at 631.544 kb on + strand at 631.544 kb on + strand at 631.544 kb on + strand at 631.544 kb on + strand at 631.544 kb on + strand at 631.544 kb on + strand at 631.552 kb on - strand at 631.552 kb on - strand at 631.554 kb on + strand at 631.554 kb on + strand at 631.554 kb on + strand at 631.554 kb on + strand at 631.554 kb on + strand at 631.557 kb on - strand at 631.557 kb on - strand at 631.557 kb on - strand at 631.562 kb on - strand at 631.562 kb on - strand at 631.562 kb on - strand at 631.562 kb on - strand at 631.562 kb on - strand at 631.567 kb on - strand at 631.568 kb on + strand at 631.569 kb on + strand at 631.569 kb on + strand at 631.576 kb on + strand at 631.576 kb on - strand at 631.576 kb on - strand at 631.591 kb on - strand at 631.593 kb on + strand at 631.610 kb on - strand at 631.610 kb on - strand at 631.624 kb on + strand at 631.632 kb on - strand at 631.634 kb on + strand at 631.634 kb on + strand at 631.642 kb on - strand at 631.673 kb on - strand at 631.721 kb on - strand at 631.721 kb on - strand at 631.721 kb on - strand at 631.730 kb on - strand at 631.845 kb on - strand at 631.865 kb on + strand at 631.870 kb on + strand at 631.870 kb on + strand at 631.870 kb on + strand at 631.897 kb on - strand at 631.920 kb on + strand at 631.920 kb on + strand at 631.928 kb on - strand, within PGA1_c06180 at 631.950 kb on - strand, within PGA1_c06180 at 631.959 kb on - strand, within PGA1_c06180 at 631.982 kb on + strand, within PGA1_c06180 at 631.985 kb on - strand, within PGA1_c06180 at 632.021 kb on - strand, within PGA1_c06180 at 632.080 kb on - strand, within PGA1_c06180 at 632.080 kb on - strand, within PGA1_c06180 at 632.093 kb on + strand, within PGA1_c06180 at 632.140 kb on - strand, within PGA1_c06180 at 632.175 kb on - strand, within PGA1_c06180 at 632.200 kb on + strand, within PGA1_c06180 at 632.313 kb on + strand, within PGA1_c06180 at 632.334 kb on + strand, within PGA1_c06180 at 632.342 kb on - strand, within PGA1_c06180 at 632.353 kb on + strand, within PGA1_c06180 at 632.374 kb on - strand, within PGA1_c06180 at 632.377 kb on + strand, within PGA1_c06180 at 632.377 kb on + strand, within PGA1_c06180 at 632.434 kb on - strand, within PGA1_c06180 at 632.449 kb on + strand, within PGA1_c06180 at 632.473 kb on + strand, within PGA1_c06180
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (C) remove 630,307 + PGA1_c06150 0.34 -0.3 630,322 + PGA1_c06150 0.36 -1.0 630,332 + PGA1_c06150 0.37 -2.6 630,337 + PGA1_c06150 0.38 +1.4 630,346 - PGA1_c06150 0.39 +1.8 630,413 - PGA1_c06150 0.46 +0.6 630,439 + PGA1_c06150 0.49 -1.3 630,439 + PGA1_c06150 0.49 +2.9 630,451 + PGA1_c06150 0.51 +0.7 630,485 + PGA1_c06150 0.55 +0.2 630,549 - PGA1_c06150 0.62 +2.1 630,566 + PGA1_c06150 0.64 +1.2 630,566 + PGA1_c06150 0.64 -2.2 630,571 + PGA1_c06150 0.65 +1.2 630,574 - PGA1_c06150 0.65 +0.8 630,574 - PGA1_c06150 0.65 +1.0 630,594 - PGA1_c06150 0.67 +2.7 630,674 - PGA1_c06150 0.77 -1.8 630,683 + PGA1_c06150 0.78 -1.1 630,683 + PGA1_c06150 0.78 +2.8 630,691 - PGA1_c06150 0.79 +1.4 630,707 - PGA1_c06150 0.80 +0.4 630,774 + PGA1_c06150 0.88 +0.4 630,830 - -0.8 630,835 - +0.2 630,863 - +2.5 630,863 - +2.2 630,884 - +1.2 630,890 - +4.4 630,961 + +2.9 630,963 + +1.4 631,018 + +1.8 631,021 - +1.9 631,026 - +0.2 631,044 + PGA1_c06160 0.11 +2.1 631,046 + PGA1_c06160 0.12 -2.5 631,085 + PGA1_c06160 0.34 +0.2 631,114 - PGA1_c06160 0.50 +0.2 631,147 + PGA1_c06160 0.69 +2.4 631,155 - PGA1_c06160 0.73 -0.8 631,155 - PGA1_c06160 0.73 +1.6 631,155 - PGA1_c06160 0.73 +1.5 631,194 - -1.1 631,215 + -1.1 631,280 + +1.9 631,315 - PGA1_c06170 0.12 +1.5 631,322 + PGA1_c06170 0.16 -2.2 631,330 - PGA1_c06170 0.20 +1.8 631,330 - PGA1_c06170 0.20 +2.0 631,330 - PGA1_c06170 0.20 +0.5 631,341 + PGA1_c06170 0.26 +0.8 631,389 - PGA1_c06170 0.52 +1.8 631,407 + PGA1_c06170 0.61 +1.2 631,412 + PGA1_c06170 0.64 +0.2 631,412 + PGA1_c06170 0.64 -0.5 631,420 - PGA1_c06170 0.68 +1.2 631,440 + PGA1_c06170 0.79 +0.4 631,478 + +0.6 631,480 + -0.2 631,486 - +1.2 631,488 + -0.2 631,488 + +0.2 631,496 - -0.3 631,539 + -2.6 631,544 + -2.4 631,544 + -0.4 631,544 + +1.9 631,544 + +0.9 631,544 + +2.6 631,544 + +1.1 631,544 + +0.0 631,544 + +1.8 631,544 + -2.5 631,544 + -0.4 631,552 - +1.0 631,552 - -0.2 631,554 + -1.9 631,554 + +2.0 631,554 + -1.6 631,554 + -0.4 631,554 + +3.4 631,557 - +3.0 631,557 - -0.8 631,557 - -1.6 631,562 - +2.9 631,562 - +2.5 631,562 - -1.6 631,562 - +1.0 631,562 - -1.2 631,567 - +0.1 631,568 + -2.1 631,569 + -1.4 631,569 + +1.0 631,576 + -2.9 631,576 - +0.9 631,576 - +0.4 631,591 - -0.4 631,593 + -1.4 631,610 - -0.7 631,610 - +1.6 631,624 + +1.5 631,632 - +1.6 631,634 + +0.3 631,634 + +0.3 631,642 - +0.2 631,673 - +2.2 631,721 - -0.8 631,721 - -1.0 631,721 - -1.6 631,730 - +1.8 631,845 - +1.2 631,865 + -0.9 631,870 + +0.9 631,870 + +0.4 631,870 + +1.2 631,897 - -1.6 631,920 + -0.7 631,920 + +0.6 631,928 - PGA1_c06180 0.10 -2.1 631,950 - PGA1_c06180 0.13 -0.8 631,959 - PGA1_c06180 0.14 +0.2 631,982 + PGA1_c06180 0.16 -1.8 631,985 - PGA1_c06180 0.16 +0.5 632,021 - PGA1_c06180 0.20 -1.1 632,080 - PGA1_c06180 0.27 -0.4 632,080 - PGA1_c06180 0.27 -1.4 632,093 + PGA1_c06180 0.28 -0.9 632,140 - PGA1_c06180 0.33 -2.5 632,175 - PGA1_c06180 0.37 -1.7 632,200 + PGA1_c06180 0.39 +1.2 632,313 + PGA1_c06180 0.52 +1.6 632,334 + PGA1_c06180 0.54 +1.9 632,342 - PGA1_c06180 0.55 -0.0 632,353 + PGA1_c06180 0.56 +0.8 632,374 - PGA1_c06180 0.58 -0.5 632,377 + PGA1_c06180 0.58 -1.8 632,377 + PGA1_c06180 0.58 -2.4 632,434 - PGA1_c06180 0.65 +1.2 632,449 + PGA1_c06180 0.66 +0.9 632,473 + PGA1_c06180 0.69 +0.2
Or see this region's nucleotide sequence