Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c06090

Experiment: NAG (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c06070 and PGA1_c06080 are separated by 40 nucleotidesPGA1_c06080 and PGA1_c06090 are separated by 3 nucleotidesPGA1_c06090 and PGA1_c06100 are separated by 10 nucleotidesPGA1_c06100 and PGA1_c06110 overlap by 1 nucleotides PGA1_c06070: PGA1_c06070 - hypothetical protein, at 621,372 to 622,220 _c06070 PGA1_c06080: PGA1_c06080 - hypothetical protein, at 622,261 to 622,863 _c06080 PGA1_c06090: PGA1_c06090 - type II secretion system protein F-like protein, at 622,867 to 623,847 _c06090 PGA1_c06100: PGA1_c06100 - type II secretion system protein F-like protein, at 623,858 to 624,826 _c06100 PGA1_c06110: PGA1_c06110 - Flp pilus assembly protein, ATPase CpaF, at 624,826 to 626,271 _c06110 Position (kb) 622 623 624Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 621.961 kb on - strand, within PGA1_c06070at 621.966 kb on - strand, within PGA1_c06070at 621.997 kb on + strand, within PGA1_c06070at 622.004 kb on + strand, within PGA1_c06070at 622.005 kb on - strand, within PGA1_c06070at 622.040 kb on + strand, within PGA1_c06070at 622.087 kb on - strand, within PGA1_c06070at 622.155 kb on - strandat 622.172 kb on + strandat 622.230 kb on + strandat 622.235 kb on + strandat 622.245 kb on + strandat 622.253 kb on - strandat 622.253 kb on - strandat 622.355 kb on - strand, within PGA1_c06080at 622.467 kb on + strand, within PGA1_c06080at 622.505 kb on + strand, within PGA1_c06080at 622.535 kb on + strand, within PGA1_c06080at 622.553 kb on - strand, within PGA1_c06080at 622.579 kb on - strand, within PGA1_c06080at 622.601 kb on - strand, within PGA1_c06080at 622.626 kb on + strand, within PGA1_c06080at 622.635 kb on - strand, within PGA1_c06080at 622.721 kb on - strand, within PGA1_c06080at 622.721 kb on - strand, within PGA1_c06080at 622.737 kb on - strand, within PGA1_c06080at 622.844 kb on + strandat 622.895 kb on - strandat 622.900 kb on - strandat 622.905 kb on - strandat 622.918 kb on - strandat 622.941 kb on + strandat 622.949 kb on - strandat 623.007 kb on + strand, within PGA1_c06090at 623.033 kb on + strand, within PGA1_c06090at 623.033 kb on + strand, within PGA1_c06090at 623.033 kb on + strand, within PGA1_c06090at 623.041 kb on - strand, within PGA1_c06090at 623.041 kb on - strand, within PGA1_c06090at 623.041 kb on - strand, within PGA1_c06090at 623.041 kb on - strand, within PGA1_c06090at 623.041 kb on - strand, within PGA1_c06090at 623.128 kb on - strand, within PGA1_c06090at 623.153 kb on + strand, within PGA1_c06090at 623.222 kb on - strand, within PGA1_c06090at 623.244 kb on - strand, within PGA1_c06090at 623.256 kb on + strand, within PGA1_c06090at 623.292 kb on - strand, within PGA1_c06090at 623.374 kb on + strand, within PGA1_c06090at 623.381 kb on - strand, within PGA1_c06090at 623.425 kb on + strand, within PGA1_c06090at 623.456 kb on + strand, within PGA1_c06090at 623.464 kb on - strand, within PGA1_c06090at 623.466 kb on + strand, within PGA1_c06090at 623.474 kb on - strand, within PGA1_c06090at 623.487 kb on + strand, within PGA1_c06090at 623.502 kb on + strand, within PGA1_c06090at 623.567 kb on + strand, within PGA1_c06090at 623.575 kb on - strand, within PGA1_c06090at 623.577 kb on + strand, within PGA1_c06090at 623.577 kb on + strand, within PGA1_c06090at 623.640 kb on - strand, within PGA1_c06090at 623.668 kb on + strand, within PGA1_c06090at 623.671 kb on - strand, within PGA1_c06090at 623.676 kb on - strand, within PGA1_c06090at 623.724 kb on + strand, within PGA1_c06090at 623.798 kb on + strandat 623.808 kb on - strandat 623.904 kb on - strandat 623.940 kb on + strandat 624.031 kb on + strand, within PGA1_c06100at 624.054 kb on + strand, within PGA1_c06100at 624.079 kb on + strand, within PGA1_c06100at 624.099 kb on + strand, within PGA1_c06100at 624.121 kb on + strand, within PGA1_c06100at 624.160 kb on + strand, within PGA1_c06100at 624.168 kb on + strand, within PGA1_c06100at 624.285 kb on + strand, within PGA1_c06100at 624.425 kb on + strand, within PGA1_c06100at 624.478 kb on + strand, within PGA1_c06100at 624.569 kb on + strand, within PGA1_c06100at 624.617 kb on - strand, within PGA1_c06100at 624.727 kb on - strand, within PGA1_c06100at 624.751 kb on + strandat 624.767 kb on - strandat 624.786 kb on - strandat 624.808 kb on + strandat 624.821 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG (C)
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621,961 - PGA1_c06070 0.69 -0.1
621,966 - PGA1_c06070 0.70 -1.7
621,997 + PGA1_c06070 0.74 +0.9
622,004 + PGA1_c06070 0.74 +1.3
622,005 - PGA1_c06070 0.75 +2.8
622,040 + PGA1_c06070 0.79 -1.3
622,087 - PGA1_c06070 0.84 -2.2
622,155 - +1.4
622,172 + +1.7
622,230 + -1.6
622,235 + -0.2
622,245 + +1.4
622,253 - +0.7
622,253 - +2.1
622,355 - PGA1_c06080 0.16 -1.1
622,467 + PGA1_c06080 0.34 +2.0
622,505 + PGA1_c06080 0.40 +2.7
622,535 + PGA1_c06080 0.45 +0.5
622,553 - PGA1_c06080 0.48 +1.5
622,579 - PGA1_c06080 0.53 +2.3
622,601 - PGA1_c06080 0.56 -0.8
622,626 + PGA1_c06080 0.61 +0.8
622,635 - PGA1_c06080 0.62 +1.0
622,721 - PGA1_c06080 0.76 -0.3
622,721 - PGA1_c06080 0.76 +1.3
622,737 - PGA1_c06080 0.79 +1.4
622,844 + -0.7
622,895 - -1.9
622,900 - +2.6
622,905 - +1.1
622,918 - -0.3
622,941 + -1.6
622,949 - -0.1
623,007 + PGA1_c06090 0.14 +2.4
623,033 + PGA1_c06090 0.17 -1.8
623,033 + PGA1_c06090 0.17 +2.8
623,033 + PGA1_c06090 0.17 -0.3
623,041 - PGA1_c06090 0.18 +1.2
623,041 - PGA1_c06090 0.18 -1.1
623,041 - PGA1_c06090 0.18 +3.4
623,041 - PGA1_c06090 0.18 +2.2
623,041 - PGA1_c06090 0.18 +0.1
623,128 - PGA1_c06090 0.27 -1.0
623,153 + PGA1_c06090 0.29 +1.2
623,222 - PGA1_c06090 0.36 +0.2
623,244 - PGA1_c06090 0.38 -1.1
623,256 + PGA1_c06090 0.40 +1.9
623,292 - PGA1_c06090 0.43 -1.6
623,374 + PGA1_c06090 0.52 -1.3
623,381 - PGA1_c06090 0.52 +3.1
623,425 + PGA1_c06090 0.57 +3.1
623,456 + PGA1_c06090 0.60 +1.4
623,464 - PGA1_c06090 0.61 +1.2
623,466 + PGA1_c06090 0.61 -1.8
623,474 - PGA1_c06090 0.62 +1.8
623,487 + PGA1_c06090 0.63 -0.3
623,502 + PGA1_c06090 0.65 +0.5
623,567 + PGA1_c06090 0.71 -1.1
623,575 - PGA1_c06090 0.72 +1.1
623,577 + PGA1_c06090 0.72 -1.8
623,577 + PGA1_c06090 0.72 +3.0
623,640 - PGA1_c06090 0.79 +2.2
623,668 + PGA1_c06090 0.82 +4.8
623,671 - PGA1_c06090 0.82 +0.1
623,676 - PGA1_c06090 0.82 +0.2
623,724 + PGA1_c06090 0.87 -0.1
623,798 + +2.2
623,808 - +0.2
623,904 - +2.5
623,940 + -0.3
624,031 + PGA1_c06100 0.18 -1.1
624,054 + PGA1_c06100 0.20 +2.6
624,079 + PGA1_c06100 0.23 +0.4
624,099 + PGA1_c06100 0.25 -1.6
624,121 + PGA1_c06100 0.27 +1.2
624,160 + PGA1_c06100 0.31 -0.3
624,168 + PGA1_c06100 0.32 +2.0
624,285 + PGA1_c06100 0.44 +2.4
624,425 + PGA1_c06100 0.59 -1.3
624,478 + PGA1_c06100 0.64 +0.7
624,569 + PGA1_c06100 0.73 +1.7
624,617 - PGA1_c06100 0.78 +1.1
624,727 - PGA1_c06100 0.90 -2.3
624,751 + +0.2
624,767 - +0.7
624,786 - +0.4
624,808 + -1.9
624,821 - +1.2

Or see this region's nucleotide sequence