Experiment: NAG (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c06010 and PGA1_c06020 are separated by 99 nucleotides PGA1_c06020 and PGA1_c06030 are separated by 85 nucleotides PGA1_c06030 and PGA1_c06040 are separated by 52 nucleotides
PGA1_c06010: PGA1_c06010 - bifunctional protein FolD, at 614,620 to 615,522
_c06010
PGA1_c06020: PGA1_c06020 - thioesterase domain-containing protein, at 615,622 to 616,032
_c06020
PGA1_c06030: PGA1_c06030 - DNA repair nuclease, ligase-associated (TIGR04123) <small>(from data)</small>, at 616,118 to 616,792
_c06030
PGA1_c06040: PGA1_c06040 - DNA damage response helicase, ligase-associated <small>(from data)</small>, at 616,845 to 619,280
_c06040
Position (kb) 616
617 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 615.491 kb on + strand at 615.605 kb on - strand at 615.627 kb on - strand at 615.728 kb on + strand, within PGA1_c06020 at 615.811 kb on - strand, within PGA1_c06020 at 615.850 kb on - strand, within PGA1_c06020 at 615.916 kb on + strand, within PGA1_c06020 at 616.061 kb on - strand at 616.144 kb on - strand at 616.162 kb on + strand at 616.181 kb on + strand at 616.250 kb on - strand, within PGA1_c06030 at 616.303 kb on + strand, within PGA1_c06030 at 616.310 kb on - strand, within PGA1_c06030 at 616.310 kb on - strand, within PGA1_c06030 at 616.310 kb on - strand, within PGA1_c06030 at 616.420 kb on - strand, within PGA1_c06030 at 616.448 kb on + strand, within PGA1_c06030 at 616.485 kb on + strand, within PGA1_c06030 at 616.490 kb on - strand, within PGA1_c06030 at 616.667 kb on - strand, within PGA1_c06030 at 616.728 kb on - strand at 616.728 kb on - strand at 616.757 kb on - strand at 616.765 kb on - strand at 616.787 kb on + strand at 616.795 kb on - strand at 616.904 kb on - strand at 617.014 kb on + strand at 617.048 kb on + strand at 617.072 kb on - strand at 617.179 kb on + strand, within PGA1_c06040 at 617.179 kb on + strand, within PGA1_c06040 at 617.187 kb on - strand, within PGA1_c06040 at 617.189 kb on + strand, within PGA1_c06040 at 617.189 kb on + strand, within PGA1_c06040 at 617.312 kb on + strand, within PGA1_c06040 at 617.341 kb on + strand, within PGA1_c06040 at 617.341 kb on + strand, within PGA1_c06040 at 617.349 kb on - strand, within PGA1_c06040 at 617.376 kb on + strand, within PGA1_c06040 at 617.417 kb on + strand, within PGA1_c06040 at 617.425 kb on - strand, within PGA1_c06040 at 617.431 kb on - strand, within PGA1_c06040 at 617.435 kb on - strand, within PGA1_c06040 at 617.520 kb on + strand, within PGA1_c06040 at 617.527 kb on + strand, within PGA1_c06040 at 617.549 kb on + strand, within PGA1_c06040 at 617.557 kb on - strand, within PGA1_c06040 at 617.563 kb on + strand, within PGA1_c06040 at 617.630 kb on + strand, within PGA1_c06040 at 617.638 kb on - strand, within PGA1_c06040 at 617.638 kb on - strand, within PGA1_c06040 at 617.699 kb on + strand, within PGA1_c06040 at 617.705 kb on - strand, within PGA1_c06040 at 617.730 kb on + strand, within PGA1_c06040 at 617.732 kb on - strand, within PGA1_c06040 at 617.738 kb on - strand, within PGA1_c06040
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (C) remove 615,491 + -2.7 615,605 - +0.7 615,627 - +1.7 615,728 + PGA1_c06020 0.26 +1.1 615,811 - PGA1_c06020 0.46 -0.1 615,850 - PGA1_c06020 0.55 +1.5 615,916 + PGA1_c06020 0.72 +0.1 616,061 - -1.9 616,144 - +1.6 616,162 + +0.9 616,181 + +0.1 616,250 - PGA1_c06030 0.20 -3.0 616,303 + PGA1_c06030 0.27 +3.5 616,310 - PGA1_c06030 0.28 +1.5 616,310 - PGA1_c06030 0.28 +0.1 616,310 - PGA1_c06030 0.28 +1.3 616,420 - PGA1_c06030 0.45 -2.2 616,448 + PGA1_c06030 0.49 +2.0 616,485 + PGA1_c06030 0.54 -0.5 616,490 - PGA1_c06030 0.55 -1.6 616,667 - PGA1_c06030 0.81 +0.7 616,728 - -2.2 616,728 - +0.8 616,757 - +0.4 616,765 - -0.1 616,787 + -1.3 616,795 - -1.5 616,904 - -0.8 617,014 + +1.6 617,048 + +2.4 617,072 - -0.6 617,179 + PGA1_c06040 0.14 -1.5 617,179 + PGA1_c06040 0.14 +1.4 617,187 - PGA1_c06040 0.14 -1.3 617,189 + PGA1_c06040 0.14 -1.1 617,189 + PGA1_c06040 0.14 -1.1 617,312 + PGA1_c06040 0.19 -1.9 617,341 + PGA1_c06040 0.20 +1.3 617,341 + PGA1_c06040 0.20 +0.3 617,349 - PGA1_c06040 0.21 -2.9 617,376 + PGA1_c06040 0.22 -0.7 617,417 + PGA1_c06040 0.23 +2.0 617,425 - PGA1_c06040 0.24 +1.5 617,431 - PGA1_c06040 0.24 +1.5 617,435 - PGA1_c06040 0.24 +1.3 617,520 + PGA1_c06040 0.28 -1.3 617,527 + PGA1_c06040 0.28 -1.7 617,549 + PGA1_c06040 0.29 -0.3 617,557 - PGA1_c06040 0.29 +1.1 617,563 + PGA1_c06040 0.29 +0.3 617,630 + PGA1_c06040 0.32 +0.7 617,638 - PGA1_c06040 0.33 -2.9 617,638 - PGA1_c06040 0.33 +1.3 617,699 + PGA1_c06040 0.35 +3.8 617,705 - PGA1_c06040 0.35 +0.8 617,730 + PGA1_c06040 0.36 -2.1 617,732 - PGA1_c06040 0.36 +0.4 617,738 - PGA1_c06040 0.37 +1.1
Or see this region's nucleotide sequence