Experiment: NAG (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c00460 and PGA1_c00470 are separated by 169 nucleotides PGA1_c00470 and PGA1_c00480 are separated by 36 nucleotides PGA1_c00480 and PGA1_c00490 overlap by 14 nucleotides
PGA1_c00460: PGA1_c00460 - adenylate cyclase domain-containing protein, at 50,811 to 52,025
_c00460
PGA1_c00470: PGA1_c00470 - hypothetical protein, at 52,195 to 52,506
_c00470
PGA1_c00480: PGA1_c00480 - CAAX prenyl protease-related protein, at 52,543 to 54,171
_c00480
PGA1_c00490: PGA1_c00490 - ATPases involved in chromosome partitioning, at 54,158 to 54,967
_c00490
Position (kb) 52
53
54
55 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 51.590 kb on + strand, within PGA1_c00460 at 51.640 kb on + strand, within PGA1_c00460 at 51.663 kb on - strand, within PGA1_c00460 at 51.663 kb on - strand, within PGA1_c00460 at 51.673 kb on - strand, within PGA1_c00460 at 51.702 kb on - strand, within PGA1_c00460 at 51.726 kb on + strand, within PGA1_c00460 at 51.733 kb on + strand, within PGA1_c00460 at 51.734 kb on - strand, within PGA1_c00460 at 51.738 kb on + strand, within PGA1_c00460 at 51.738 kb on + strand, within PGA1_c00460 at 51.738 kb on + strand, within PGA1_c00460 at 51.738 kb on + strand, within PGA1_c00460 at 51.738 kb on + strand, within PGA1_c00460 at 51.741 kb on - strand, within PGA1_c00460 at 51.746 kb on - strand, within PGA1_c00460 at 51.754 kb on + strand, within PGA1_c00460 at 51.768 kb on + strand, within PGA1_c00460 at 51.774 kb on - strand, within PGA1_c00460 at 51.774 kb on - strand, within PGA1_c00460 at 51.891 kb on - strand, within PGA1_c00460 at 51.906 kb on - strand at 51.906 kb on - strand at 51.930 kb on + strand at 51.943 kb on + strand at 51.943 kb on + strand at 51.943 kb on + strand at 51.943 kb on + strand at 51.951 kb on - strand at 51.951 kb on - strand at 51.951 kb on - strand at 51.961 kb on - strand at 51.961 kb on - strand at 51.982 kb on + strand at 51.990 kb on - strand at 52.004 kb on - strand at 52.019 kb on + strand at 52.109 kb on - strand at 52.111 kb on + strand at 52.117 kb on + strand at 52.117 kb on + strand at 52.117 kb on + strand at 52.117 kb on + strand at 52.118 kb on + strand at 52.118 kb on + strand at 52.118 kb on + strand at 52.118 kb on + strand at 52.119 kb on - strand at 52.126 kb on - strand at 52.126 kb on - strand at 52.126 kb on - strand at 52.153 kb on + strand at 52.154 kb on + strand at 52.158 kb on + strand at 52.158 kb on + strand at 52.158 kb on + strand at 52.161 kb on - strand at 52.167 kb on - strand at 52.169 kb on + strand at 52.172 kb on - strand at 52.172 kb on - strand at 52.183 kb on + strand at 52.183 kb on + strand at 52.199 kb on + strand at 52.207 kb on - strand at 52.209 kb on + strand at 52.209 kb on + strand at 52.217 kb on - strand at 52.217 kb on - strand at 52.273 kb on - strand, within PGA1_c00470 at 52.321 kb on + strand, within PGA1_c00470 at 52.323 kb on - strand, within PGA1_c00470 at 52.329 kb on - strand, within PGA1_c00470 at 52.396 kb on - strand, within PGA1_c00470 at 52.421 kb on + strand, within PGA1_c00470 at 52.421 kb on + strand, within PGA1_c00470 at 52.421 kb on + strand, within PGA1_c00470 at 52.421 kb on + strand, within PGA1_c00470 at 52.426 kb on + strand, within PGA1_c00470 at 52.429 kb on - strand, within PGA1_c00470 at 52.429 kb on - strand, within PGA1_c00470 at 52.429 kb on - strand, within PGA1_c00470 at 52.464 kb on - strand, within PGA1_c00470 at 52.477 kb on - strand at 52.490 kb on + strand at 52.500 kb on + strand at 52.541 kb on + strand at 52.549 kb on - strand at 52.554 kb on - strand at 52.554 kb on - strand at 52.632 kb on - strand at 52.634 kb on + strand at 52.634 kb on + strand at 52.642 kb on + strand at 52.642 kb on - strand at 52.829 kb on - strand, within PGA1_c00480 at 52.832 kb on - strand, within PGA1_c00480 at 52.847 kb on - strand, within PGA1_c00480 at 52.850 kb on + strand, within PGA1_c00480 at 52.858 kb on - strand, within PGA1_c00480 at 52.869 kb on + strand, within PGA1_c00480 at 52.877 kb on - strand, within PGA1_c00480 at 52.882 kb on - strand, within PGA1_c00480 at 52.896 kb on + strand, within PGA1_c00480 at 52.953 kb on + strand, within PGA1_c00480 at 52.975 kb on + strand, within PGA1_c00480 at 52.980 kb on + strand, within PGA1_c00480 at 52.980 kb on + strand, within PGA1_c00480 at 52.980 kb on + strand, within PGA1_c00480 at 52.983 kb on - strand, within PGA1_c00480 at 52.983 kb on - strand, within PGA1_c00480 at 52.983 kb on - strand, within PGA1_c00480 at 52.985 kb on + strand, within PGA1_c00480 at 53.043 kb on - strand, within PGA1_c00480 at 53.053 kb on - strand, within PGA1_c00480 at 53.053 kb on - strand, within PGA1_c00480 at 53.065 kb on + strand, within PGA1_c00480 at 53.065 kb on + strand, within PGA1_c00480 at 53.065 kb on + strand, within PGA1_c00480 at 53.067 kb on + strand, within PGA1_c00480 at 53.067 kb on + strand, within PGA1_c00480 at 53.067 kb on + strand, within PGA1_c00480 at 53.070 kb on + strand, within PGA1_c00480 at 53.073 kb on - strand, within PGA1_c00480 at 53.073 kb on - strand, within PGA1_c00480 at 53.073 kb on - strand, within PGA1_c00480 at 53.075 kb on + strand, within PGA1_c00480 at 53.075 kb on - strand, within PGA1_c00480 at 53.075 kb on - strand, within PGA1_c00480 at 53.075 kb on - strand, within PGA1_c00480 at 53.075 kb on - strand, within PGA1_c00480 at 53.075 kb on - strand, within PGA1_c00480 at 53.075 kb on - strand, within PGA1_c00480 at 53.118 kb on + strand, within PGA1_c00480 at 53.118 kb on - strand, within PGA1_c00480 at 53.126 kb on - strand, within PGA1_c00480 at 53.126 kb on - strand, within PGA1_c00480 at 53.153 kb on + strand, within PGA1_c00480 at 53.206 kb on + strand, within PGA1_c00480 at 53.239 kb on + strand, within PGA1_c00480 at 53.263 kb on + strand, within PGA1_c00480 at 53.273 kb on + strand, within PGA1_c00480 at 53.282 kb on + strand, within PGA1_c00480 at 53.329 kb on + strand, within PGA1_c00480 at 53.334 kb on + strand, within PGA1_c00480 at 53.342 kb on - strand, within PGA1_c00480 at 53.349 kb on - strand, within PGA1_c00480 at 53.362 kb on + strand, within PGA1_c00480 at 53.375 kb on - strand, within PGA1_c00480 at 53.424 kb on + strand, within PGA1_c00480 at 53.457 kb on - strand, within PGA1_c00480 at 53.520 kb on + strand, within PGA1_c00480 at 53.520 kb on + strand, within PGA1_c00480 at 53.545 kb on + strand, within PGA1_c00480 at 53.568 kb on + strand, within PGA1_c00480 at 53.633 kb on + strand, within PGA1_c00480 at 53.633 kb on + strand, within PGA1_c00480 at 53.633 kb on + strand, within PGA1_c00480 at 53.633 kb on + strand, within PGA1_c00480 at 53.633 kb on + strand, within PGA1_c00480 at 53.636 kb on - strand, within PGA1_c00480 at 53.641 kb on - strand, within PGA1_c00480 at 53.641 kb on - strand, within PGA1_c00480 at 53.641 kb on - strand, within PGA1_c00480 at 53.641 kb on - strand, within PGA1_c00480 at 53.641 kb on - strand, within PGA1_c00480 at 53.641 kb on - strand, within PGA1_c00480 at 53.663 kb on - strand, within PGA1_c00480 at 53.669 kb on - strand, within PGA1_c00480 at 53.673 kb on + strand, within PGA1_c00480 at 53.673 kb on + strand, within PGA1_c00480 at 53.681 kb on - strand, within PGA1_c00480 at 53.694 kb on - strand, within PGA1_c00480 at 53.812 kb on - strand, within PGA1_c00480 at 53.864 kb on + strand, within PGA1_c00480 at 53.882 kb on - strand, within PGA1_c00480 at 53.886 kb on + strand, within PGA1_c00480 at 53.957 kb on - strand, within PGA1_c00480 at 53.975 kb on + strand, within PGA1_c00480 at 53.993 kb on + strand, within PGA1_c00480 at 53.998 kb on + strand, within PGA1_c00480 at 53.998 kb on + strand, within PGA1_c00480 at 53.998 kb on + strand, within PGA1_c00480 at 53.998 kb on + strand, within PGA1_c00480 at 53.998 kb on + strand, within PGA1_c00480 at 54.006 kb on - strand, within PGA1_c00480 at 54.006 kb on - strand, within PGA1_c00480 at 54.006 kb on - strand, within PGA1_c00480 at 54.006 kb on - strand, within PGA1_c00480 at 54.042 kb on + strand at 54.145 kb on + strand at 54.151 kb on + strand at 54.211 kb on + strand at 54.211 kb on + strand at 54.220 kb on - strand at 54.237 kb on + strand at 54.285 kb on - strand, within PGA1_c00490 at 54.296 kb on - strand, within PGA1_c00490 at 54.361 kb on + strand, within PGA1_c00490 at 54.480 kb on + strand, within PGA1_c00490 at 54.652 kb on - strand, within PGA1_c00490 at 54.724 kb on + strand, within PGA1_c00490 at 54.724 kb on + strand, within PGA1_c00490 at 54.732 kb on - strand, within PGA1_c00490 at 54.776 kb on - strand, within PGA1_c00490 at 54.779 kb on + strand, within PGA1_c00490 at 54.855 kb on - strand, within PGA1_c00490 at 54.913 kb on + strand at 54.984 kb on - strand at 54.986 kb on - strand at 54.986 kb on - strand at 54.995 kb on + strand at 55.077 kb on - strand at 55.087 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (C) remove 51,590 + PGA1_c00460 0.64 +0.1 51,640 + PGA1_c00460 0.68 +0.6 51,663 - PGA1_c00460 0.70 -1.9 51,663 - PGA1_c00460 0.70 -1.8 51,673 - PGA1_c00460 0.71 -3.4 51,702 - PGA1_c00460 0.73 +0.7 51,726 + PGA1_c00460 0.75 -2.7 51,733 + PGA1_c00460 0.76 +0.7 51,734 - PGA1_c00460 0.76 -2.5 51,738 + PGA1_c00460 0.76 +0.9 51,738 + PGA1_c00460 0.76 +0.2 51,738 + PGA1_c00460 0.76 +1.3 51,738 + PGA1_c00460 0.76 +0.3 51,738 + PGA1_c00460 0.76 -0.4 51,741 - PGA1_c00460 0.77 -1.1 51,746 - PGA1_c00460 0.77 -0.2 51,754 + PGA1_c00460 0.78 -1.1 51,768 + PGA1_c00460 0.79 +0.4 51,774 - PGA1_c00460 0.79 +0.9 51,774 - PGA1_c00460 0.79 +0.6 51,891 - PGA1_c00460 0.89 +0.4 51,906 - +0.5 51,906 - -4.0 51,930 + +0.9 51,943 + +0.7 51,943 + -0.3 51,943 + -0.5 51,943 + -1.3 51,951 - +0.3 51,951 - -2.6 51,951 - +0.5 51,961 - -0.4 51,961 - +0.1 51,982 + +1.1 51,990 - +1.5 52,004 - -1.3 52,019 + +1.1 52,109 - +1.5 52,111 + -2.9 52,117 + +0.0 52,117 + +0.8 52,117 + -1.9 52,117 + -0.3 52,118 + +1.1 52,118 + -2.4 52,118 + -0.9 52,118 + +0.6 52,119 - -1.5 52,126 - -3.2 52,126 - -0.9 52,126 - +0.4 52,153 + +0.1 52,154 + +0.2 52,158 + +1.4 52,158 + -0.1 52,158 + -0.1 52,161 - -1.5 52,167 - -0.9 52,169 + -2.2 52,172 - +0.7 52,172 - -1.3 52,183 + +1.9 52,183 + -1.1 52,199 + -1.7 52,207 - +0.5 52,209 + +0.6 52,209 + -1.9 52,217 - +0.8 52,217 - -0.6 52,273 - PGA1_c00470 0.25 +0.9 52,321 + PGA1_c00470 0.40 +1.8 52,323 - PGA1_c00470 0.41 +0.7 52,329 - PGA1_c00470 0.43 -1.2 52,396 - PGA1_c00470 0.64 -2.0 52,421 + PGA1_c00470 0.72 +1.0 52,421 + PGA1_c00470 0.72 +1.2 52,421 + PGA1_c00470 0.72 -0.0 52,421 + PGA1_c00470 0.72 +0.1 52,426 + PGA1_c00470 0.74 +1.0 52,429 - PGA1_c00470 0.75 +0.1 52,429 - PGA1_c00470 0.75 -0.4 52,429 - PGA1_c00470 0.75 -1.5 52,464 - PGA1_c00470 0.86 +0.6 52,477 - +1.5 52,490 + -2.0 52,500 + +0.1 52,541 + +1.5 52,549 - +2.6 52,554 - +0.8 52,554 - +0.9 52,632 - +0.7 52,634 + -2.6 52,634 + +0.8 52,642 + +0.7 52,642 - +0.1 52,829 - PGA1_c00480 0.18 +1.2 52,832 - PGA1_c00480 0.18 +3.5 52,847 - PGA1_c00480 0.19 +0.5 52,850 + PGA1_c00480 0.19 -0.7 52,858 - PGA1_c00480 0.19 +1.1 52,869 + PGA1_c00480 0.20 -0.0 52,877 - PGA1_c00480 0.21 -0.2 52,882 - PGA1_c00480 0.21 -2.6 52,896 + PGA1_c00480 0.22 +2.1 52,953 + PGA1_c00480 0.25 -1.3 52,975 + PGA1_c00480 0.27 -1.1 52,980 + PGA1_c00480 0.27 -1.4 52,980 + PGA1_c00480 0.27 -1.9 52,980 + PGA1_c00480 0.27 -0.2 52,983 - PGA1_c00480 0.27 -0.4 52,983 - PGA1_c00480 0.27 -1.1 52,983 - PGA1_c00480 0.27 +0.3 52,985 + PGA1_c00480 0.27 +0.8 53,043 - PGA1_c00480 0.31 -0.4 53,053 - PGA1_c00480 0.31 -1.9 53,053 - PGA1_c00480 0.31 +1.2 53,065 + PGA1_c00480 0.32 -1.3 53,065 + PGA1_c00480 0.32 -1.9 53,065 + PGA1_c00480 0.32 -1.2 53,067 + PGA1_c00480 0.32 +0.7 53,067 + PGA1_c00480 0.32 +0.9 53,067 + PGA1_c00480 0.32 -0.8 53,070 + PGA1_c00480 0.32 -2.6 53,073 - PGA1_c00480 0.33 +0.1 53,073 - PGA1_c00480 0.33 +0.5 53,073 - PGA1_c00480 0.33 -3.2 53,075 + PGA1_c00480 0.33 -1.5 53,075 - PGA1_c00480 0.33 -3.0 53,075 - PGA1_c00480 0.33 +0.2 53,075 - PGA1_c00480 0.33 +1.2 53,075 - PGA1_c00480 0.33 +0.0 53,075 - PGA1_c00480 0.33 -2.6 53,075 - PGA1_c00480 0.33 -1.1 53,118 + PGA1_c00480 0.35 +0.9 53,118 - PGA1_c00480 0.35 -1.1 53,126 - PGA1_c00480 0.36 +1.2 53,126 - PGA1_c00480 0.36 -2.0 53,153 + PGA1_c00480 0.37 -2.9 53,206 + PGA1_c00480 0.41 -0.9 53,239 + PGA1_c00480 0.43 -0.5 53,263 + PGA1_c00480 0.44 -0.5 53,273 + PGA1_c00480 0.45 -3.3 53,282 + PGA1_c00480 0.45 -2.2 53,329 + PGA1_c00480 0.48 -0.2 53,334 + PGA1_c00480 0.49 +1.4 53,342 - PGA1_c00480 0.49 -0.9 53,349 - PGA1_c00480 0.49 -2.3 53,362 + PGA1_c00480 0.50 +0.2 53,375 - PGA1_c00480 0.51 -0.1 53,424 + PGA1_c00480 0.54 +1.1 53,457 - PGA1_c00480 0.56 -2.3 53,520 + PGA1_c00480 0.60 -0.2 53,520 + PGA1_c00480 0.60 +1.2 53,545 + PGA1_c00480 0.62 -1.0 53,568 + PGA1_c00480 0.63 -2.9 53,633 + PGA1_c00480 0.67 +0.9 53,633 + PGA1_c00480 0.67 -2.9 53,633 + PGA1_c00480 0.67 -3.2 53,633 + PGA1_c00480 0.67 +1.2 53,633 + PGA1_c00480 0.67 -3.4 53,636 - PGA1_c00480 0.67 +2.9 53,641 - PGA1_c00480 0.67 +0.6 53,641 - PGA1_c00480 0.67 -0.9 53,641 - PGA1_c00480 0.67 +1.6 53,641 - PGA1_c00480 0.67 -1.0 53,641 - PGA1_c00480 0.67 +0.2 53,641 - PGA1_c00480 0.67 -0.9 53,663 - PGA1_c00480 0.69 +0.5 53,669 - PGA1_c00480 0.69 -0.9 53,673 + PGA1_c00480 0.69 -1.3 53,673 + PGA1_c00480 0.69 -0.1 53,681 - PGA1_c00480 0.70 +0.8 53,694 - PGA1_c00480 0.71 +0.5 53,812 - PGA1_c00480 0.78 +0.1 53,864 + PGA1_c00480 0.81 +0.3 53,882 - PGA1_c00480 0.82 -0.9 53,886 + PGA1_c00480 0.82 +0.6 53,957 - PGA1_c00480 0.87 -0.5 53,975 + PGA1_c00480 0.88 -0.9 53,993 + PGA1_c00480 0.89 +1.1 53,998 + PGA1_c00480 0.89 +1.1 53,998 + PGA1_c00480 0.89 -0.6 53,998 + PGA1_c00480 0.89 +1.1 53,998 + PGA1_c00480 0.89 -1.9 53,998 + PGA1_c00480 0.89 -2.2 54,006 - PGA1_c00480 0.90 -1.1 54,006 - PGA1_c00480 0.90 -0.3 54,006 - PGA1_c00480 0.90 +1.7 54,006 - PGA1_c00480 0.90 -0.2 54,042 + -1.2 54,145 + -1.0 54,151 + +0.6 54,211 + -1.5 54,211 + -1.7 54,220 - +2.5 54,237 + +0.5 54,285 - PGA1_c00490 0.16 -2.5 54,296 - PGA1_c00490 0.17 -1.5 54,361 + PGA1_c00490 0.25 -2.2 54,480 + PGA1_c00490 0.40 +0.5 54,652 - PGA1_c00490 0.61 +1.5 54,724 + PGA1_c00490 0.70 +1.3 54,724 + PGA1_c00490 0.70 -0.9 54,732 - PGA1_c00490 0.71 -0.5 54,776 - PGA1_c00490 0.76 +1.0 54,779 + PGA1_c00490 0.77 -0.5 54,855 - PGA1_c00490 0.86 -2.8 54,913 + -1.1 54,984 - -1.3 54,986 - -0.4 54,986 - +1.1 54,995 + +0.6 55,077 - -0.8 55,087 - -2.0
Or see this region's nucleotide sequence