Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_4050 and HP15_4051 are separated by 71 nucleotides HP15_4051 and HP15_4052 are separated by 17 nucleotides HP15_4052 and HP15_4053 are separated by 75 nucleotides
HP15_4050: HP15_4050 - sensory box/GGDEF family protein, at 4,283,991 to 4,286,258
_4050
HP15_4051: HP15_4051 - phenylacetic acid degradation-related protein, thioesterase superfamily, at 4,286,330 to 4,286,758
_4051
HP15_4052: HP15_4052 - response regulator, at 4,286,776 to 4,287,729
_4052
HP15_4053: HP15_4053 - metal-dependent phosphohydrolase, HD subdomain protein, at 4,287,805 to 4,289,142
_4053
Position (kb)
4286
4287
4288 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4286.078 kb on - strand at 4286.078 kb on - strand at 4286.078 kb on - strand at 4286.110 kb on - strand at 4286.151 kb on + strand at 4286.196 kb on + strand at 4286.621 kb on + strand, within HP15_4051 at 4286.629 kb on - strand, within HP15_4051 at 4286.637 kb on - strand, within HP15_4051 at 4286.651 kb on - strand, within HP15_4051 at 4286.826 kb on - strand at 4286.991 kb on + strand, within HP15_4052 at 4287.019 kb on + strand, within HP15_4052 at 4287.037 kb on - strand, within HP15_4052 at 4287.044 kb on + strand, within HP15_4052 at 4287.224 kb on - strand, within HP15_4052 at 4287.247 kb on + strand, within HP15_4052 at 4287.264 kb on + strand, within HP15_4052 at 4287.474 kb on + strand, within HP15_4052 at 4287.497 kb on + strand, within HP15_4052 at 4287.503 kb on + strand at 4287.521 kb on + strand, within HP15_4052 at 4287.539 kb on + strand, within HP15_4052 at 4287.547 kb on + strand, within HP15_4052 at 4287.583 kb on - strand, within HP15_4052 at 4287.616 kb on - strand, within HP15_4052 at 4287.651 kb on - strand at 4287.818 kb on + strand at 4287.826 kb on - strand at 4287.826 kb on - strand at 4287.826 kb on - strand at 4287.833 kb on - strand at 4287.862 kb on + strand at 4287.870 kb on + strand at 4287.875 kb on + strand at 4287.897 kb on - strand at 4287.906 kb on - strand at 4287.953 kb on - strand, within HP15_4053 at 4288.015 kb on - strand, within HP15_4053 at 4288.044 kb on - strand, within HP15_4053 at 4288.047 kb on - strand, within HP15_4053 at 4288.047 kb on - strand, within HP15_4053 at 4288.061 kb on + strand, within HP15_4053 at 4288.088 kb on + strand, within HP15_4053 at 4288.129 kb on - strand, within HP15_4053 at 4288.151 kb on - strand, within HP15_4053 at 4288.363 kb on + strand, within HP15_4053 at 4288.371 kb on + strand, within HP15_4053 at 4288.441 kb on - strand, within HP15_4053 at 4288.481 kb on + strand, within HP15_4053 at 4288.491 kb on + strand, within HP15_4053 at 4288.498 kb on - strand, within HP15_4053 at 4288.500 kb on + strand, within HP15_4053 at 4288.525 kb on + strand, within HP15_4053 at 4288.537 kb on + strand, within HP15_4053 at 4288.577 kb on - strand, within HP15_4053 at 4288.579 kb on + strand, within HP15_4053 at 4288.591 kb on + strand, within HP15_4053 at 4288.599 kb on - strand, within HP15_4053 at 4288.663 kb on + strand, within HP15_4053 at 4288.704 kb on + strand, within HP15_4053 at 4288.704 kb on + strand, within HP15_4053 at 4288.704 kb on + strand, within HP15_4053 at 4288.706 kb on - strand, within HP15_4053 at 4288.712 kb on - strand, within HP15_4053 at 4288.712 kb on - strand, within HP15_4053 at 4288.712 kb on - strand, within HP15_4053 at 4288.718 kb on - strand, within HP15_4053
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 4,286,078 - -0.8 4,286,078 - +0.1 4,286,078 - +0.0 4,286,110 - -1.0 4,286,151 + -0.8 4,286,196 + +0.2 4,286,621 + HP15_4051 0.68 +1.2 4,286,629 - HP15_4051 0.70 +0.1 4,286,637 - HP15_4051 0.72 +1.9 4,286,651 - HP15_4051 0.75 -0.4 4,286,826 - +0.3 4,286,991 + HP15_4052 0.23 +0.5 4,287,019 + HP15_4052 0.25 +0.9 4,287,037 - HP15_4052 0.27 +0.0 4,287,044 + HP15_4052 0.28 +0.6 4,287,224 - HP15_4052 0.47 -0.1 4,287,247 + HP15_4052 0.49 +0.6 4,287,264 + HP15_4052 0.51 +0.7 4,287,474 + HP15_4052 0.73 -0.3 4,287,497 + HP15_4052 0.76 +0.3 4,287,503 + +2.5 4,287,521 + HP15_4052 0.78 -1.2 4,287,539 + HP15_4052 0.80 -0.4 4,287,547 + HP15_4052 0.81 +0.2 4,287,583 - HP15_4052 0.85 -0.1 4,287,616 - HP15_4052 0.88 +0.1 4,287,651 - +0.2 4,287,818 + +0.0 4,287,826 - -2.2 4,287,826 - +0.1 4,287,826 - -0.7 4,287,833 - +0.7 4,287,862 + +1.1 4,287,870 + +0.2 4,287,875 + -1.1 4,287,897 - -0.6 4,287,906 - -1.9 4,287,953 - HP15_4053 0.11 -0.2 4,288,015 - HP15_4053 0.16 -0.7 4,288,044 - HP15_4053 0.18 -0.0 4,288,047 - HP15_4053 0.18 +1.0 4,288,047 - HP15_4053 0.18 +0.5 4,288,061 + HP15_4053 0.19 +0.2 4,288,088 + HP15_4053 0.21 -0.6 4,288,129 - HP15_4053 0.24 +0.9 4,288,151 - HP15_4053 0.26 +0.7 4,288,363 + HP15_4053 0.42 +0.7 4,288,371 + HP15_4053 0.42 +1.4 4,288,441 - HP15_4053 0.48 -1.2 4,288,481 + HP15_4053 0.51 +0.7 4,288,491 + HP15_4053 0.51 -0.5 4,288,498 - HP15_4053 0.52 -0.1 4,288,500 + HP15_4053 0.52 +0.7 4,288,525 + HP15_4053 0.54 -0.5 4,288,537 + HP15_4053 0.55 +0.7 4,288,577 - HP15_4053 0.58 -1.0 4,288,579 + HP15_4053 0.58 -0.1 4,288,591 + HP15_4053 0.59 +0.9 4,288,599 - HP15_4053 0.59 +0.1 4,288,663 + HP15_4053 0.64 -1.1 4,288,704 + HP15_4053 0.67 +0.5 4,288,704 + HP15_4053 0.67 +0.7 4,288,704 + HP15_4053 0.67 -0.4 4,288,706 - HP15_4053 0.67 +0.1 4,288,712 - HP15_4053 0.68 -0.0 4,288,712 - HP15_4053 0.68 +0.0 4,288,712 - HP15_4053 0.68 +0.2 4,288,718 - HP15_4053 0.68 +1.9
Or see this region's nucleotide sequence