Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_262p01570

Experiment: NAG (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_262p01560 and PGA1_262p01570 are separated by 192 nucleotidesPGA1_262p01570 and PGA1_262p01580 are separated by 180 nucleotidesPGA1_262p01580 and PGA1_262p01590 are separated by 28 nucleotides PGA1_262p01560: PGA1_262p01560 - putative transcriptional regulator, AraC family, at 172,223 to 173,248 _262p01560 PGA1_262p01570: PGA1_262p01570 - Domain of unknown function., at 173,441 to 175,663 _262p01570 PGA1_262p01580: PGA1_262p01580 - putative metal ion uptake regulator, at 175,844 to 176,230 _262p01580 PGA1_262p01590: PGA1_262p01590 - Protein of unknown function (DUF2796)., at 176,259 to 176,930 _262p01590 Position (kb) 173 174 175 176Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 172.507 kb on + strand, within PGA1_262p01560at 172.507 kb on + strand, within PGA1_262p01560at 172.507 kb on + strand, within PGA1_262p01560at 172.507 kb on + strand, within PGA1_262p01560at 172.507 kb on + strand, within PGA1_262p01560at 172.507 kb on + strand, within PGA1_262p01560at 172.507 kb on + strand, within PGA1_262p01560at 172.507 kb on + strand, within PGA1_262p01560at 172.507 kb on + strand, within PGA1_262p01560at 172.507 kb on + strand, within PGA1_262p01560at 172.507 kb on + strand, within PGA1_262p01560at 172.515 kb on - strand, within PGA1_262p01560at 172.515 kb on - strand, within PGA1_262p01560at 172.515 kb on - strand, within PGA1_262p01560at 172.515 kb on - strand, within PGA1_262p01560at 172.515 kb on - strand, within PGA1_262p01560at 172.515 kb on - strand, within PGA1_262p01560at 172.515 kb on - strand, within PGA1_262p01560at 172.515 kb on - strand, within PGA1_262p01560at 172.515 kb on - strand, within PGA1_262p01560at 172.515 kb on - strand, within PGA1_262p01560at 172.515 kb on - strand, within PGA1_262p01560at 172.515 kb on - strand, within PGA1_262p01560at 172.515 kb on - strand, within PGA1_262p01560at 172.640 kb on - strand, within PGA1_262p01560at 172.666 kb on + strand, within PGA1_262p01560at 172.721 kb on + strand, within PGA1_262p01560at 172.729 kb on - strand, within PGA1_262p01560at 172.735 kb on + strand, within PGA1_262p01560at 172.735 kb on + strand, within PGA1_262p01560at 172.735 kb on + strand, within PGA1_262p01560at 172.780 kb on + strand, within PGA1_262p01560at 172.788 kb on - strand, within PGA1_262p01560at 172.788 kb on - strand, within PGA1_262p01560at 172.815 kb on + strand, within PGA1_262p01560at 172.830 kb on - strand, within PGA1_262p01560at 172.855 kb on + strand, within PGA1_262p01560at 173.281 kb on + strandat 173.339 kb on + strandat 173.347 kb on - strandat 173.352 kb on + strandat 173.396 kb on + strandat 173.423 kb on - strandat 173.423 kb on - strandat 173.426 kb on + strandat 173.471 kb on + strandat 173.479 kb on - strandat 173.551 kb on + strandat 173.553 kb on + strandat 173.553 kb on + strandat 173.553 kb on + strandat 173.553 kb on + strandat 173.553 kb on + strandat 173.559 kb on - strandat 173.559 kb on - strandat 173.559 kb on - strandat 173.559 kb on - strandat 173.561 kb on - strandat 173.653 kb on + strandat 173.789 kb on - strand, within PGA1_262p01570at 173.977 kb on - strand, within PGA1_262p01570at 173.977 kb on - strand, within PGA1_262p01570at 174.009 kb on + strand, within PGA1_262p01570at 174.022 kb on - strand, within PGA1_262p01570at 174.024 kb on - strand, within PGA1_262p01570at 174.024 kb on - strand, within PGA1_262p01570at 174.099 kb on + strand, within PGA1_262p01570at 174.245 kb on + strand, within PGA1_262p01570at 174.245 kb on + strand, within PGA1_262p01570at 174.258 kb on - strand, within PGA1_262p01570at 174.284 kb on + strand, within PGA1_262p01570at 174.393 kb on + strand, within PGA1_262p01570at 174.416 kb on - strand, within PGA1_262p01570at 174.724 kb on + strand, within PGA1_262p01570at 174.787 kb on - strand, within PGA1_262p01570at 174.876 kb on - strand, within PGA1_262p01570at 174.952 kb on + strand, within PGA1_262p01570at 174.954 kb on + strand, within PGA1_262p01570at 174.960 kb on - strand, within PGA1_262p01570at 175.011 kb on + strand, within PGA1_262p01570at 175.013 kb on + strand, within PGA1_262p01570at 175.029 kb on - strand, within PGA1_262p01570at 175.100 kb on - strand, within PGA1_262p01570at 175.232 kb on - strand, within PGA1_262p01570at 175.249 kb on - strand, within PGA1_262p01570at 175.255 kb on + strand, within PGA1_262p01570at 175.295 kb on + strand, within PGA1_262p01570at 175.295 kb on + strand, within PGA1_262p01570at 175.301 kb on + strand, within PGA1_262p01570at 175.306 kb on + strand, within PGA1_262p01570at 175.560 kb on + strandat 175.583 kb on - strandat 175.732 kb on + strandat 175.828 kb on + strandat 175.857 kb on + strandat 175.885 kb on - strand, within PGA1_262p01580at 176.150 kb on + strand, within PGA1_262p01580at 176.308 kb on - strandat 176.309 kb on + strandat 176.425 kb on + strand, within PGA1_262p01590at 176.425 kb on + strand, within PGA1_262p01590at 176.494 kb on - strand, within PGA1_262p01590at 176.514 kb on + strand, within PGA1_262p01590at 176.539 kb on - strand, within PGA1_262p01590at 176.544 kb on - strand, within PGA1_262p01590at 176.640 kb on - strand, within PGA1_262p01590

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG (C)
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172,507 + PGA1_262p01560 0.28 -1.0
172,507 + PGA1_262p01560 0.28 +0.7
172,507 + PGA1_262p01560 0.28 -0.8
172,507 + PGA1_262p01560 0.28 -0.6
172,507 + PGA1_262p01560 0.28 -1.7
172,507 + PGA1_262p01560 0.28 -0.7
172,507 + PGA1_262p01560 0.28 -2.3
172,507 + PGA1_262p01560 0.28 -1.3
172,507 + PGA1_262p01560 0.28 -1.4
172,507 + PGA1_262p01560 0.28 -0.7
172,507 + PGA1_262p01560 0.28 -0.3
172,515 - PGA1_262p01560 0.28 -2.0
172,515 - PGA1_262p01560 0.28 +0.3
172,515 - PGA1_262p01560 0.28 -2.3
172,515 - PGA1_262p01560 0.28 -2.1
172,515 - PGA1_262p01560 0.28 -0.3
172,515 - PGA1_262p01560 0.28 -0.3
172,515 - PGA1_262p01560 0.28 +2.9
172,515 - PGA1_262p01560 0.28 -2.1
172,515 - PGA1_262p01560 0.28 -3.4
172,515 - PGA1_262p01560 0.28 -0.8
172,515 - PGA1_262p01560 0.28 -1.1
172,515 - PGA1_262p01560 0.28 -1.5
172,515 - PGA1_262p01560 0.28 -0.6
172,640 - PGA1_262p01560 0.41 +0.8
172,666 + PGA1_262p01560 0.43 +1.0
172,721 + PGA1_262p01560 0.49 -1.7
172,729 - PGA1_262p01560 0.49 -2.1
172,735 + PGA1_262p01560 0.50 -0.1
172,735 + PGA1_262p01560 0.50 -1.8
172,735 + PGA1_262p01560 0.50 -1.3
172,780 + PGA1_262p01560 0.54 +1.6
172,788 - PGA1_262p01560 0.55 -1.7
172,788 - PGA1_262p01560 0.55 +1.9
172,815 + PGA1_262p01560 0.58 +1.3
172,830 - PGA1_262p01560 0.59 +1.3
172,855 + PGA1_262p01560 0.62 -0.2
173,281 + +1.9
173,339 + -0.2
173,347 - +0.8
173,352 + -0.1
173,396 + -0.3
173,423 - -1.8
173,423 - -1.0
173,426 + -0.1
173,471 + -0.2
173,479 - +0.2
173,551 + -1.8
173,553 + +0.3
173,553 + +0.7
173,553 + +0.4
173,553 + +0.4
173,553 + +2.6
173,559 - -2.1
173,559 - +1.1
173,559 - -0.1
173,559 - -0.3
173,561 - -0.3
173,653 + +1.0
173,789 - PGA1_262p01570 0.16 -2.7
173,977 - PGA1_262p01570 0.24 -0.7
173,977 - PGA1_262p01570 0.24 +1.0
174,009 + PGA1_262p01570 0.26 -0.1
174,022 - PGA1_262p01570 0.26 +1.5
174,024 - PGA1_262p01570 0.26 -2.8
174,024 - PGA1_262p01570 0.26 +0.7
174,099 + PGA1_262p01570 0.30 +1.2
174,245 + PGA1_262p01570 0.36 -1.7
174,245 + PGA1_262p01570 0.36 -0.9
174,258 - PGA1_262p01570 0.37 -0.2
174,284 + PGA1_262p01570 0.38 -3.4
174,393 + PGA1_262p01570 0.43 +0.4
174,416 - PGA1_262p01570 0.44 +2.1
174,724 + PGA1_262p01570 0.58 +2.8
174,787 - PGA1_262p01570 0.61 +0.4
174,876 - PGA1_262p01570 0.65 -2.3
174,952 + PGA1_262p01570 0.68 +2.0
174,954 + PGA1_262p01570 0.68 -0.5
174,960 - PGA1_262p01570 0.68 -2.4
175,011 + PGA1_262p01570 0.71 -1.7
175,013 + PGA1_262p01570 0.71 -2.3
175,029 - PGA1_262p01570 0.71 -2.9
175,100 - PGA1_262p01570 0.75 +0.6
175,232 - PGA1_262p01570 0.81 +1.3
175,249 - PGA1_262p01570 0.81 +1.0
175,255 + PGA1_262p01570 0.82 +0.0
175,295 + PGA1_262p01570 0.83 +1.7
175,295 + PGA1_262p01570 0.83 +3.4
175,301 + PGA1_262p01570 0.84 -2.7
175,306 + PGA1_262p01570 0.84 -2.8
175,560 + +0.2
175,583 - +0.3
175,732 + +0.4
175,828 + -0.5
175,857 + -1.6
175,885 - PGA1_262p01580 0.11 +2.1
176,150 + PGA1_262p01580 0.79 +0.2
176,308 - +1.2
176,309 + -0.4
176,425 + PGA1_262p01590 0.25 +0.5
176,425 + PGA1_262p01590 0.25 +0.5
176,494 - PGA1_262p01590 0.35 +0.1
176,514 + PGA1_262p01590 0.38 +1.0
176,539 - PGA1_262p01590 0.42 +0.1
176,544 - PGA1_262p01590 0.42 -2.0
176,640 - PGA1_262p01590 0.57 +0.1

Or see this region's nucleotide sequence