Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c03490

Experiment: NAG (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPGA1_c03480 and PGA1_c03490 are separated by 61 nucleotidesPGA1_c03490 and PGA1_c03500 are separated by 218 nucleotidesPGA1_c03500 and PGA1_c03510 overlap by 4 nucleotides PGA1_c03480: PGA1_c03480 - hypothetical protein, at 334,018 to 336,831 _c03480 PGA1_c03490: PGA1_c03490 - hypothetical protein, at 336,893 to 337,774 _c03490 PGA1_c03500: PGA1_c03500 - putative cell division ATP-binding protein FtsE, at 337,993 to 338,670 _c03500 PGA1_c03510: PGA1_c03510 - protein insertion permease FtsX-like protein, at 338,667 to 339,566 _c03510 Position (kb) 336 337 338Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 335.899 kb on + strand, within PGA1_c03480at 336.022 kb on - strand, within PGA1_c03480at 336.029 kb on + strand, within PGA1_c03480at 336.046 kb on + strand, within PGA1_c03480at 336.046 kb on + strand, within PGA1_c03480at 336.046 kb on + strand, within PGA1_c03480at 336.046 kb on + strand, within PGA1_c03480at 336.046 kb on + strand, within PGA1_c03480at 336.059 kb on - strand, within PGA1_c03480at 336.061 kb on + strand, within PGA1_c03480at 336.090 kb on + strand, within PGA1_c03480at 336.098 kb on - strand, within PGA1_c03480at 336.098 kb on - strand, within PGA1_c03480at 336.294 kb on - strand, within PGA1_c03480at 336.361 kb on + strand, within PGA1_c03480at 336.361 kb on + strand, within PGA1_c03480at 336.362 kb on + strand, within PGA1_c03480at 336.376 kb on - strand, within PGA1_c03480at 336.387 kb on + strand, within PGA1_c03480at 336.387 kb on + strand, within PGA1_c03480at 336.387 kb on + strand, within PGA1_c03480at 336.387 kb on + strand, within PGA1_c03480at 336.387 kb on + strand, within PGA1_c03480at 336.387 kb on + strand, within PGA1_c03480at 336.387 kb on + strand, within PGA1_c03480at 336.395 kb on - strand, within PGA1_c03480at 336.402 kb on - strand, within PGA1_c03480at 336.444 kb on + strand, within PGA1_c03480at 336.486 kb on + strand, within PGA1_c03480at 336.550 kb on + strandat 336.550 kb on + strandat 336.608 kb on - strandat 336.618 kb on + strandat 336.715 kb on + strandat 336.715 kb on + strandat 336.715 kb on + strandat 336.715 kb on + strandat 336.779 kb on + strandat 336.811 kb on - strandat 336.832 kb on - strandat 336.869 kb on + strandat 336.904 kb on + strandat 336.912 kb on - strandat 336.912 kb on - strandat 336.912 kb on - strandat 336.978 kb on + strandat 336.984 kb on + strand, within PGA1_c03490at 336.992 kb on - strand, within PGA1_c03490at 337.026 kb on + strand, within PGA1_c03490at 337.194 kb on - strand, within PGA1_c03490at 337.333 kb on - strand, within PGA1_c03490at 337.382 kb on + strand, within PGA1_c03490at 337.719 kb on - strandat 337.776 kb on + strandat 337.783 kb on - strandat 337.876 kb on + strandat 337.893 kb on + strandat 337.893 kb on + strandat 337.901 kb on - strandat 337.901 kb on - strandat 337.914 kb on + strandat 337.922 kb on - strandat 337.928 kb on - strandat 337.937 kb on + strandat 338.043 kb on - strandat 338.097 kb on + strand, within PGA1_c03500at 338.268 kb on + strand, within PGA1_c03500at 338.295 kb on + strand, within PGA1_c03500at 338.309 kb on - strand, within PGA1_c03500at 338.570 kb on + strand, within PGA1_c03500at 338.589 kb on - strand, within PGA1_c03500at 338.594 kb on - strand, within PGA1_c03500at 338.594 kb on - strand, within PGA1_c03500at 338.613 kb on + strandat 338.613 kb on + strandat 338.652 kb on + strandat 338.652 kb on + strandat 338.676 kb on + strandat 338.711 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NAG (C)
remove
335,899 + PGA1_c03480 0.67 +0.9
336,022 - PGA1_c03480 0.71 +1.6
336,029 + PGA1_c03480 0.71 -0.6
336,046 + PGA1_c03480 0.72 -2.7
336,046 + PGA1_c03480 0.72 +1.4
336,046 + PGA1_c03480 0.72 -1.4
336,046 + PGA1_c03480 0.72 -0.4
336,046 + PGA1_c03480 0.72 +0.5
336,059 - PGA1_c03480 0.73 +1.7
336,061 + PGA1_c03480 0.73 -0.6
336,090 + PGA1_c03480 0.74 -0.6
336,098 - PGA1_c03480 0.74 +0.2
336,098 - PGA1_c03480 0.74 -2.4
336,294 - PGA1_c03480 0.81 +1.4
336,361 + PGA1_c03480 0.83 -0.3
336,361 + PGA1_c03480 0.83 +1.1
336,362 + PGA1_c03480 0.83 -1.4
336,376 - PGA1_c03480 0.84 -0.9
336,387 + PGA1_c03480 0.84 +1.7
336,387 + PGA1_c03480 0.84 +0.5
336,387 + PGA1_c03480 0.84 +0.9
336,387 + PGA1_c03480 0.84 -0.6
336,387 + PGA1_c03480 0.84 +0.2
336,387 + PGA1_c03480 0.84 -1.2
336,387 + PGA1_c03480 0.84 +1.3
336,395 - PGA1_c03480 0.84 -2.7
336,402 - PGA1_c03480 0.85 +1.1
336,444 + PGA1_c03480 0.86 -0.8
336,486 + PGA1_c03480 0.88 -0.8
336,550 + -2.2
336,550 + -1.5
336,608 - +0.8
336,618 + -1.1
336,715 + +1.2
336,715 + +0.2
336,715 + -0.2
336,715 + -2.5
336,779 + +3.0
336,811 - +2.5
336,832 - +0.1
336,869 + -0.5
336,904 + -2.4
336,912 - +0.2
336,912 - -0.8
336,912 - +1.1
336,978 + +2.5
336,984 + PGA1_c03490 0.10 -0.6
336,992 - PGA1_c03490 0.11 -3.9
337,026 + PGA1_c03490 0.15 -1.6
337,194 - PGA1_c03490 0.34 -1.6
337,333 - PGA1_c03490 0.50 +0.4
337,382 + PGA1_c03490 0.55 -1.9
337,719 - -0.2
337,776 + -1.9
337,783 - +2.4
337,876 + +3.1
337,893 + +2.5
337,893 + +0.4
337,901 - -0.6
337,901 - -0.8
337,914 + +0.2
337,922 - +1.0
337,928 - +1.1
337,937 + +2.6
338,043 - +1.6
338,097 + PGA1_c03500 0.15 +1.9
338,268 + PGA1_c03500 0.41 -2.4
338,295 + PGA1_c03500 0.45 +0.6
338,309 - PGA1_c03500 0.47 -1.6
338,570 + PGA1_c03500 0.85 -1.4
338,589 - PGA1_c03500 0.88 +1.1
338,594 - PGA1_c03500 0.89 +0.8
338,594 - PGA1_c03500 0.89 +3.1
338,613 + -2.8
338,613 + +1.5
338,652 + -0.6
338,652 + +0.2
338,676 + +2.1
338,711 + -2.8

Or see this region's nucleotide sequence