Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2981 and HP15_2982 are separated by 6 nucleotides HP15_2982 and HP15_2983 are separated by 86 nucleotides
HP15_2981: HP15_2981 - 3-oxoacyl-(acyl-carrier-protein) synthase I, at 3,123,898 to 3,125,109
_2981
HP15_2982: HP15_2982 - protein containing Helix-turn-helix, AraC domain, at 3,125,116 to 3,125,472
_2982
HP15_2983: HP15_2983 - peptidase, U32 family, at 3,125,559 to 3,126,956
_2983
Position (kb)
3125
3126 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3124.142 kb on - strand, within HP15_2981 at 3124.173 kb on + strand, within HP15_2981 at 3124.377 kb on - strand, within HP15_2981 at 3124.738 kb on - strand, within HP15_2981 at 3124.790 kb on + strand, within HP15_2981 at 3125.077 kb on + strand at 3125.126 kb on - strand at 3125.132 kb on - strand at 3125.240 kb on - strand, within HP15_2982 at 3125.254 kb on + strand, within HP15_2982 at 3125.333 kb on + strand, within HP15_2982 at 3125.394 kb on + strand, within HP15_2982 at 3125.399 kb on + strand, within HP15_2982 at 3125.404 kb on + strand, within HP15_2982 at 3125.445 kb on + strand at 3125.471 kb on + strand at 3125.588 kb on - strand at 3125.628 kb on + strand at 3125.638 kb on + strand at 3125.638 kb on + strand at 3125.638 kb on + strand at 3125.638 kb on + strand at 3125.638 kb on + strand at 3125.638 kb on + strand at 3125.638 kb on + strand at 3125.646 kb on - strand at 3125.646 kb on - strand at 3125.646 kb on - strand at 3125.646 kb on - strand at 3125.646 kb on - strand at 3125.665 kb on + strand at 3125.673 kb on - strand at 3125.675 kb on + strand at 3125.683 kb on - strand at 3125.683 kb on - strand at 3125.683 kb on - strand at 3125.685 kb on + strand at 3125.713 kb on + strand, within HP15_2983 at 3125.816 kb on + strand, within HP15_2983 at 3125.824 kb on - strand, within HP15_2983 at 3125.824 kb on - strand, within HP15_2983 at 3125.860 kb on + strand, within HP15_2983 at 3125.990 kb on - strand, within HP15_2983 at 3126.018 kb on - strand, within HP15_2983 at 3126.148 kb on - strand, within HP15_2983 at 3126.148 kb on - strand, within HP15_2983 at 3126.250 kb on - strand, within HP15_2983 at 3126.253 kb on + strand, within HP15_2983 at 3126.261 kb on - strand, within HP15_2983 at 3126.261 kb on - strand, within HP15_2983 at 3126.308 kb on - strand, within HP15_2983 at 3126.375 kb on + strand, within HP15_2983
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 3,124,142 - HP15_2981 0.20 -0.2 3,124,173 + HP15_2981 0.23 +0.8 3,124,377 - HP15_2981 0.40 +0.8 3,124,738 - HP15_2981 0.69 +1.4 3,124,790 + HP15_2981 0.74 +0.5 3,125,077 + +0.6 3,125,126 - +3.4 3,125,132 - +0.2 3,125,240 - HP15_2982 0.35 +0.3 3,125,254 + HP15_2982 0.39 +1.2 3,125,333 + HP15_2982 0.61 +2.1 3,125,394 + HP15_2982 0.78 +0.4 3,125,399 + HP15_2982 0.79 +0.8 3,125,404 + HP15_2982 0.81 +1.4 3,125,445 + -0.8 3,125,471 + -1.1 3,125,588 - +0.8 3,125,628 + -0.3 3,125,638 + -0.1 3,125,638 + -1.4 3,125,638 + -0.3 3,125,638 + +0.7 3,125,638 + -0.2 3,125,638 + +0.6 3,125,638 + +0.9 3,125,646 - +0.9 3,125,646 - -0.2 3,125,646 - -0.6 3,125,646 - +0.5 3,125,646 - +0.1 3,125,665 + -0.1 3,125,673 - -0.4 3,125,675 + +0.0 3,125,683 - -0.3 3,125,683 - -0.4 3,125,683 - -0.6 3,125,685 + +0.7 3,125,713 + HP15_2983 0.11 -1.2 3,125,816 + HP15_2983 0.18 +0.5 3,125,824 - HP15_2983 0.19 -0.9 3,125,824 - HP15_2983 0.19 +0.8 3,125,860 + HP15_2983 0.22 +0.2 3,125,990 - HP15_2983 0.31 +1.2 3,126,018 - HP15_2983 0.33 +1.7 3,126,148 - HP15_2983 0.42 -0.5 3,126,148 - HP15_2983 0.42 -0.2 3,126,250 - HP15_2983 0.49 -2.1 3,126,253 + HP15_2983 0.50 -0.1 3,126,261 - HP15_2983 0.50 -1.2 3,126,261 - HP15_2983 0.50 +0.3 3,126,308 - HP15_2983 0.54 +0.8 3,126,375 + HP15_2983 0.58 +0.9
Or see this region's nucleotide sequence