Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c16250

Experiment: NAG (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c16240 and PGA1_c16250 are separated by 7 nucleotidesPGA1_c16250 and PGA1_c16260 are separated by 204 nucleotides PGA1_c16240: PGA1_c16240 - methylthioribose-1-phosphate isomerase MtnA, at 1,685,857 to 1,686,960 _c16240 PGA1_c16250: PGA1_c16250 - putative L-fuculose phosphate aldolase, at 1,686,968 to 1,687,639 _c16250 PGA1_c16260: PGA1_c16260 - putative membrane dipeptidase, at 1,687,844 to 1,688,914 _c16260 Position (kb) 1686 1687 1688Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1686.058 kb on - strand, within PGA1_c16240at 1686.101 kb on + strand, within PGA1_c16240at 1686.109 kb on - strand, within PGA1_c16240at 1686.109 kb on - strand, within PGA1_c16240at 1686.111 kb on + strand, within PGA1_c16240at 1686.112 kb on - strand, within PGA1_c16240at 1686.186 kb on + strand, within PGA1_c16240at 1686.187 kb on - strand, within PGA1_c16240at 1686.190 kb on + strand, within PGA1_c16240at 1686.190 kb on + strand, within PGA1_c16240at 1686.190 kb on + strand, within PGA1_c16240at 1686.272 kb on + strand, within PGA1_c16240at 1686.445 kb on - strand, within PGA1_c16240at 1686.479 kb on + strand, within PGA1_c16240at 1686.508 kb on - strand, within PGA1_c16240at 1686.513 kb on - strand, within PGA1_c16240at 1686.558 kb on + strand, within PGA1_c16240at 1686.570 kb on - strand, within PGA1_c16240at 1686.581 kb on - strand, within PGA1_c16240at 1686.637 kb on - strand, within PGA1_c16240at 1686.638 kb on - strand, within PGA1_c16240at 1686.646 kb on + strand, within PGA1_c16240at 1686.659 kb on - strand, within PGA1_c16240at 1686.763 kb on - strand, within PGA1_c16240at 1686.765 kb on + strand, within PGA1_c16240at 1686.765 kb on + strand, within PGA1_c16240at 1686.819 kb on - strand, within PGA1_c16240at 1686.850 kb on - strandat 1686.905 kb on + strandat 1686.918 kb on - strandat 1687.001 kb on - strandat 1687.016 kb on + strandat 1687.055 kb on - strand, within PGA1_c16250at 1687.176 kb on + strand, within PGA1_c16250at 1687.176 kb on + strand, within PGA1_c16250at 1687.181 kb on + strand, within PGA1_c16250at 1687.184 kb on - strand, within PGA1_c16250at 1687.198 kb on + strand, within PGA1_c16250at 1687.206 kb on - strand, within PGA1_c16250at 1687.256 kb on - strand, within PGA1_c16250at 1687.298 kb on - strand, within PGA1_c16250at 1687.319 kb on + strand, within PGA1_c16250at 1687.356 kb on + strand, within PGA1_c16250at 1687.395 kb on - strand, within PGA1_c16250at 1687.441 kb on + strand, within PGA1_c16250at 1687.562 kb on - strand, within PGA1_c16250at 1687.563 kb on + strand, within PGA1_c16250at 1687.563 kb on + strand, within PGA1_c16250at 1687.563 kb on + strand, within PGA1_c16250at 1687.571 kb on - strand, within PGA1_c16250at 1687.571 kb on - strand, within PGA1_c16250at 1687.583 kb on + strandat 1687.695 kb on + strandat 1687.717 kb on + strandat 1687.734 kb on + strandat 1687.734 kb on + strandat 1687.742 kb on - strandat 1687.742 kb on - strandat 1687.742 kb on - strandat 1687.754 kb on + strandat 1687.764 kb on + strandat 1687.767 kb on - strandat 1687.817 kb on + strandat 1688.058 kb on + strand, within PGA1_c16260at 1688.058 kb on + strand, within PGA1_c16260at 1688.058 kb on + strand, within PGA1_c16260at 1688.058 kb on + strand, within PGA1_c16260at 1688.058 kb on + strand, within PGA1_c16260at 1688.058 kb on + strand, within PGA1_c16260at 1688.058 kb on + strand, within PGA1_c16260at 1688.058 kb on + strand, within PGA1_c16260at 1688.058 kb on + strand, within PGA1_c16260at 1688.058 kb on + strand, within PGA1_c16260at 1688.058 kb on + strand, within PGA1_c16260at 1688.058 kb on + strand, within PGA1_c16260at 1688.058 kb on + strand, within PGA1_c16260at 1688.058 kb on + strand, within PGA1_c16260at 1688.058 kb on + strand, within PGA1_c16260at 1688.058 kb on + strand, within PGA1_c16260at 1688.058 kb on + strand, within PGA1_c16260at 1688.066 kb on - strand, within PGA1_c16260at 1688.066 kb on - strand, within PGA1_c16260at 1688.066 kb on - strand, within PGA1_c16260at 1688.066 kb on - strand, within PGA1_c16260at 1688.066 kb on - strand, within PGA1_c16260at 1688.066 kb on - strand, within PGA1_c16260at 1688.100 kb on - strand, within PGA1_c16260at 1688.234 kb on - strand, within PGA1_c16260at 1688.246 kb on - strand, within PGA1_c16260at 1688.276 kb on - strand, within PGA1_c16260at 1688.278 kb on + strand, within PGA1_c16260at 1688.291 kb on + strand, within PGA1_c16260at 1688.299 kb on - strand, within PGA1_c16260at 1688.299 kb on - strand, within PGA1_c16260at 1688.299 kb on - strand, within PGA1_c16260at 1688.309 kb on - strand, within PGA1_c16260at 1688.309 kb on - strand, within PGA1_c16260at 1688.309 kb on - strand, within PGA1_c16260at 1688.312 kb on + strand, within PGA1_c16260at 1688.312 kb on + strand, within PGA1_c16260at 1688.320 kb on - strand, within PGA1_c16260at 1688.320 kb on - strand, within PGA1_c16260at 1688.320 kb on - strand, within PGA1_c16260at 1688.320 kb on - strand, within PGA1_c16260at 1688.320 kb on - strand, within PGA1_c16260at 1688.331 kb on + strand, within PGA1_c16260at 1688.374 kb on - strand, within PGA1_c16260at 1688.488 kb on + strand, within PGA1_c16260at 1688.547 kb on + strand, within PGA1_c16260at 1688.603 kb on + strand, within PGA1_c16260at 1688.616 kb on - strand, within PGA1_c16260

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG (C)
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1,686,058 - PGA1_c16240 0.18 -0.5
1,686,101 + PGA1_c16240 0.22 +0.3
1,686,109 - PGA1_c16240 0.23 -1.7
1,686,109 - PGA1_c16240 0.23 -2.4
1,686,111 + PGA1_c16240 0.23 -1.0
1,686,112 - PGA1_c16240 0.23 +1.4
1,686,186 + PGA1_c16240 0.30 -2.3
1,686,187 - PGA1_c16240 0.30 +0.2
1,686,190 + PGA1_c16240 0.30 +2.1
1,686,190 + PGA1_c16240 0.30 -2.7
1,686,190 + PGA1_c16240 0.30 -3.0
1,686,272 + PGA1_c16240 0.38 -2.8
1,686,445 - PGA1_c16240 0.53 -0.7
1,686,479 + PGA1_c16240 0.56 -0.8
1,686,508 - PGA1_c16240 0.59 -1.5
1,686,513 - PGA1_c16240 0.59 -2.7
1,686,558 + PGA1_c16240 0.63 +1.8
1,686,570 - PGA1_c16240 0.65 +0.8
1,686,581 - PGA1_c16240 0.66 -0.4
1,686,637 - PGA1_c16240 0.71 -2.2
1,686,638 - PGA1_c16240 0.71 -1.0
1,686,646 + PGA1_c16240 0.71 -2.1
1,686,659 - PGA1_c16240 0.73 +0.7
1,686,763 - PGA1_c16240 0.82 +0.6
1,686,765 + PGA1_c16240 0.82 -0.4
1,686,765 + PGA1_c16240 0.82 -1.9
1,686,819 - PGA1_c16240 0.87 -0.3
1,686,850 - -1.7
1,686,905 + -0.3
1,686,918 - +0.4
1,687,001 - -0.5
1,687,016 + +0.7
1,687,055 - PGA1_c16250 0.13 +0.2
1,687,176 + PGA1_c16250 0.31 -0.5
1,687,176 + PGA1_c16250 0.31 +0.7
1,687,181 + PGA1_c16250 0.32 +0.6
1,687,184 - PGA1_c16250 0.32 +0.1
1,687,198 + PGA1_c16250 0.34 +0.6
1,687,206 - PGA1_c16250 0.35 -0.1
1,687,256 - PGA1_c16250 0.43 -2.4
1,687,298 - PGA1_c16250 0.49 +0.9
1,687,319 + PGA1_c16250 0.52 +0.6
1,687,356 + PGA1_c16250 0.58 -2.8
1,687,395 - PGA1_c16250 0.64 -0.1
1,687,441 + PGA1_c16250 0.70 +0.1
1,687,562 - PGA1_c16250 0.88 -3.6
1,687,563 + PGA1_c16250 0.89 -0.1
1,687,563 + PGA1_c16250 0.89 -1.6
1,687,563 + PGA1_c16250 0.89 -2.8
1,687,571 - PGA1_c16250 0.90 -2.9
1,687,571 - PGA1_c16250 0.90 -0.3
1,687,583 + +0.2
1,687,695 + -0.9
1,687,717 + -3.9
1,687,734 + -0.7
1,687,734 + +0.9
1,687,742 - +0.2
1,687,742 - -0.1
1,687,742 - -2.1
1,687,754 + +1.3
1,687,764 + +0.2
1,687,767 - +1.7
1,687,817 + +3.7
1,688,058 + PGA1_c16260 0.20 +2.7
1,688,058 + PGA1_c16260 0.20 +0.5
1,688,058 + PGA1_c16260 0.20 -3.1
1,688,058 + PGA1_c16260 0.20 -2.7
1,688,058 + PGA1_c16260 0.20 +0.3
1,688,058 + PGA1_c16260 0.20 +0.9
1,688,058 + PGA1_c16260 0.20 +1.0
1,688,058 + PGA1_c16260 0.20 +0.1
1,688,058 + PGA1_c16260 0.20 +0.2
1,688,058 + PGA1_c16260 0.20 +0.8
1,688,058 + PGA1_c16260 0.20 +0.7
1,688,058 + PGA1_c16260 0.20 -2.4
1,688,058 + PGA1_c16260 0.20 -3.4
1,688,058 + PGA1_c16260 0.20 -2.6
1,688,058 + PGA1_c16260 0.20 +0.9
1,688,058 + PGA1_c16260 0.20 -0.7
1,688,058 + PGA1_c16260 0.20 -1.6
1,688,066 - PGA1_c16260 0.21 -2.4
1,688,066 - PGA1_c16260 0.21 +1.6
1,688,066 - PGA1_c16260 0.21 -1.1
1,688,066 - PGA1_c16260 0.21 -1.1
1,688,066 - PGA1_c16260 0.21 +0.5
1,688,066 - PGA1_c16260 0.21 -0.1
1,688,100 - PGA1_c16260 0.24 +0.9
1,688,234 - PGA1_c16260 0.36 -3.1
1,688,246 - PGA1_c16260 0.38 -1.9
1,688,276 - PGA1_c16260 0.40 +1.3
1,688,278 + PGA1_c16260 0.41 +0.9
1,688,291 + PGA1_c16260 0.42 -1.4
1,688,299 - PGA1_c16260 0.42 -3.1
1,688,299 - PGA1_c16260 0.42 -2.2
1,688,299 - PGA1_c16260 0.42 +0.4
1,688,309 - PGA1_c16260 0.43 +0.5
1,688,309 - PGA1_c16260 0.43 +0.6
1,688,309 - PGA1_c16260 0.43 +1.1
1,688,312 + PGA1_c16260 0.44 -0.7
1,688,312 + PGA1_c16260 0.44 -0.1
1,688,320 - PGA1_c16260 0.44 -1.4
1,688,320 - PGA1_c16260 0.44 -2.8
1,688,320 - PGA1_c16260 0.44 +0.8
1,688,320 - PGA1_c16260 0.44 +0.2
1,688,320 - PGA1_c16260 0.44 +1.1
1,688,331 + PGA1_c16260 0.45 -2.1
1,688,374 - PGA1_c16260 0.49 +0.7
1,688,488 + PGA1_c16260 0.60 +0.8
1,688,547 + PGA1_c16260 0.66 +0.8
1,688,603 + PGA1_c16260 0.71 +1.2
1,688,616 - PGA1_c16260 0.72 +0.6

Or see this region's nucleotide sequence