Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1500 and HP15_1501 are separated by 30 nucleotides HP15_1501 and HP15_1502 are separated by 41 nucleotides HP15_1502 and HP15_tRNA28 are separated by 51 nucleotides HP15_tRNA28 and HP15_1503 are separated by 115 nucleotides HP15_1503 and HP15_1504 are separated by 53 nucleotides HP15_1504 and HP15_1505 are separated by 103 nucleotides
HP15_1500: HP15_1500 - sensory box/GGDEF family protein, at 1,576,858 to 1,579,287
_1500
HP15_1501: HP15_1501 - hypothetical protein, at 1,579,318 to 1,579,473
_1501
HP15_1502: HP15_1502 - conserved hypothetical protein, at 1,579,515 to 1,579,661
_1502
HP15_tRNA28: HP15_tRNA28 - tRNA-Glu, at 1,579,713 to 1,579,788
_tRNA28
HP15_1503: HP15_1503 - nucleoside-diphosphate sugar epimerase, at 1,579,904 to 1,580,830
_1503
HP15_1504: HP15_1504 - cobalamin (vitamin B12) biosynthesis CbiX protein, at 1,580,884 to 1,581,258
_1504
HP15_1505: HP15_1505 - protein containing DUF924, bacterial, at 1,581,362 to 1,581,964
_1505
Position (kb)
1579
1580
1581 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1578.912 kb on + strand, within HP15_1500 at 1579.052 kb on + strand at 1579.071 kb on + strand at 1579.071 kb on + strand at 1579.078 kb on + strand at 1579.079 kb on - strand at 1579.155 kb on - strand at 1579.270 kb on + strand at 1579.432 kb on + strand, within HP15_1501 at 1579.446 kb on - strand, within HP15_1501 at 1579.536 kb on + strand, within HP15_1502 at 1579.952 kb on - strand at 1579.954 kb on + strand at 1580.096 kb on + strand, within HP15_1503 at 1580.096 kb on + strand, within HP15_1503 at 1580.175 kb on - strand, within HP15_1503 at 1580.175 kb on - strand, within HP15_1503 at 1580.175 kb on - strand, within HP15_1503 at 1580.175 kb on - strand, within HP15_1503 at 1580.210 kb on + strand, within HP15_1503 at 1580.278 kb on + strand, within HP15_1503 at 1580.361 kb on - strand, within HP15_1503 at 1580.540 kb on - strand, within HP15_1503 at 1580.600 kb on + strand, within HP15_1503 at 1580.839 kb on + strand at 1580.867 kb on + strand at 1581.132 kb on + strand, within HP15_1504 at 1581.466 kb on - strand, within HP15_1505 at 1581.473 kb on - strand at 1581.665 kb on - strand, within HP15_1505 at 1581.674 kb on + strand, within HP15_1505 at 1581.739 kb on + strand, within HP15_1505 at 1581.754 kb on + strand, within HP15_1505 at 1581.798 kb on + strand, within HP15_1505
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 1,578,912 + HP15_1500 0.85 -0.8 1,579,052 + +0.6 1,579,071 + +1.2 1,579,071 + +0.2 1,579,078 + +0.1 1,579,079 - -0.2 1,579,155 - -1.0 1,579,270 + +0.2 1,579,432 + HP15_1501 0.73 -0.2 1,579,446 - HP15_1501 0.82 -2.0 1,579,536 + HP15_1502 0.14 -0.5 1,579,952 - -0.2 1,579,954 + +0.2 1,580,096 + HP15_1503 0.21 -0.5 1,580,096 + HP15_1503 0.21 +1.8 1,580,175 - HP15_1503 0.29 +0.1 1,580,175 - HP15_1503 0.29 -1.2 1,580,175 - HP15_1503 0.29 -0.6 1,580,175 - HP15_1503 0.29 +0.7 1,580,210 + HP15_1503 0.33 -0.1 1,580,278 + HP15_1503 0.40 -0.3 1,580,361 - HP15_1503 0.49 +0.2 1,580,540 - HP15_1503 0.69 +0.1 1,580,600 + HP15_1503 0.75 -1.5 1,580,839 + -1.1 1,580,867 + -1.1 1,581,132 + HP15_1504 0.66 -0.0 1,581,466 - HP15_1505 0.17 -1.7 1,581,473 - +3.0 1,581,665 - HP15_1505 0.50 +0.1 1,581,674 + HP15_1505 0.52 +0.4 1,581,739 + HP15_1505 0.63 +0.1 1,581,754 + HP15_1505 0.65 -0.1 1,581,798 + HP15_1505 0.72 +0.4
Or see this region's nucleotide sequence