Strain Fitness in Marinobacter adhaerens HP15 around HP15_tRNA28

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1500 and HP15_1501 are separated by 30 nucleotidesHP15_1501 and HP15_1502 are separated by 41 nucleotidesHP15_1502 and HP15_tRNA28 are separated by 51 nucleotidesHP15_tRNA28 and HP15_1503 are separated by 115 nucleotides HP15_1500: HP15_1500 - sensory box/GGDEF family protein, at 1,576,858 to 1,579,287 _1500 HP15_1501: HP15_1501 - hypothetical protein, at 1,579,318 to 1,579,473 _1501 HP15_1502: HP15_1502 - conserved hypothetical protein, at 1,579,515 to 1,579,661 _1502 HP15_tRNA28: HP15_tRNA28 - tRNA-Glu, at 1,579,713 to 1,579,788 _tRNA28 HP15_1503: HP15_1503 - nucleoside-diphosphate sugar epimerase, at 1,579,904 to 1,580,830 _1503 Position (kb) 1579 1580Strain fitness (log2 ratio) -2 -1 0 1 2at 1578.846 kb on + strand, within HP15_1500at 1578.912 kb on + strand, within HP15_1500at 1579.052 kb on + strandat 1579.071 kb on + strandat 1579.071 kb on + strandat 1579.078 kb on + strandat 1579.079 kb on - strandat 1579.155 kb on - strandat 1579.270 kb on + strandat 1579.432 kb on + strand, within HP15_1501at 1579.446 kb on - strand, within HP15_1501at 1579.536 kb on + strand, within HP15_1502at 1579.952 kb on - strandat 1579.954 kb on + strandat 1580.096 kb on + strand, within HP15_1503at 1580.096 kb on + strand, within HP15_1503at 1580.175 kb on - strand, within HP15_1503at 1580.175 kb on - strand, within HP15_1503at 1580.175 kb on - strand, within HP15_1503at 1580.175 kb on - strand, within HP15_1503at 1580.210 kb on + strand, within HP15_1503at 1580.278 kb on + strand, within HP15_1503at 1580.361 kb on - strand, within HP15_1503at 1580.540 kb on - strand, within HP15_1503at 1580.600 kb on + strand, within HP15_1503

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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1,578,846 + HP15_1500 0.82 -0.5
1,578,912 + HP15_1500 0.85 -0.8
1,579,052 + +0.6
1,579,071 + +1.2
1,579,071 + +0.2
1,579,078 + +0.1
1,579,079 - -0.2
1,579,155 - -1.0
1,579,270 + +0.2
1,579,432 + HP15_1501 0.73 -0.2
1,579,446 - HP15_1501 0.82 -2.0
1,579,536 + HP15_1502 0.14 -0.5
1,579,952 - -0.2
1,579,954 + +0.2
1,580,096 + HP15_1503 0.21 -0.5
1,580,096 + HP15_1503 0.21 +1.8
1,580,175 - HP15_1503 0.29 +0.1
1,580,175 - HP15_1503 0.29 -1.2
1,580,175 - HP15_1503 0.29 -0.6
1,580,175 - HP15_1503 0.29 +0.7
1,580,210 + HP15_1503 0.33 -0.1
1,580,278 + HP15_1503 0.40 -0.3
1,580,361 - HP15_1503 0.49 +0.2
1,580,540 - HP15_1503 0.69 +0.1
1,580,600 + HP15_1503 0.75 -1.5

Or see this region's nucleotide sequence