Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1500 and HP15_1501 are separated by 30 nucleotides HP15_1501 and HP15_1502 are separated by 41 nucleotides HP15_1502 and HP15_tRNA28 are separated by 51 nucleotides HP15_tRNA28 and HP15_1503 are separated by 115 nucleotides
HP15_1500: HP15_1500 - sensory box/GGDEF family protein, at 1,576,858 to 1,579,287
_1500
HP15_1501: HP15_1501 - hypothetical protein, at 1,579,318 to 1,579,473
_1501
HP15_1502: HP15_1502 - conserved hypothetical protein, at 1,579,515 to 1,579,661
_1502
HP15_tRNA28: HP15_tRNA28 - tRNA-Glu, at 1,579,713 to 1,579,788
_tRNA28
HP15_1503: HP15_1503 - nucleoside-diphosphate sugar epimerase, at 1,579,904 to 1,580,830
_1503
Position (kb)
1579
1580 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1578.846 kb on + strand, within HP15_1500 at 1578.912 kb on + strand, within HP15_1500 at 1579.052 kb on + strand at 1579.071 kb on + strand at 1579.071 kb on + strand at 1579.078 kb on + strand at 1579.079 kb on - strand at 1579.155 kb on - strand at 1579.270 kb on + strand at 1579.432 kb on + strand, within HP15_1501 at 1579.446 kb on - strand, within HP15_1501 at 1579.536 kb on + strand, within HP15_1502 at 1579.952 kb on - strand at 1579.954 kb on + strand at 1580.096 kb on + strand, within HP15_1503 at 1580.096 kb on + strand, within HP15_1503 at 1580.175 kb on - strand, within HP15_1503 at 1580.175 kb on - strand, within HP15_1503 at 1580.175 kb on - strand, within HP15_1503 at 1580.175 kb on - strand, within HP15_1503 at 1580.210 kb on + strand, within HP15_1503 at 1580.278 kb on + strand, within HP15_1503 at 1580.361 kb on - strand, within HP15_1503 at 1580.540 kb on - strand, within HP15_1503 at 1580.600 kb on + strand, within HP15_1503
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 1,578,846 + HP15_1500 0.82 -0.5 1,578,912 + HP15_1500 0.85 -0.8 1,579,052 + +0.6 1,579,071 + +1.2 1,579,071 + +0.2 1,579,078 + +0.1 1,579,079 - -0.2 1,579,155 - -1.0 1,579,270 + +0.2 1,579,432 + HP15_1501 0.73 -0.2 1,579,446 - HP15_1501 0.82 -2.0 1,579,536 + HP15_1502 0.14 -0.5 1,579,952 - -0.2 1,579,954 + +0.2 1,580,096 + HP15_1503 0.21 -0.5 1,580,096 + HP15_1503 0.21 +1.8 1,580,175 - HP15_1503 0.29 +0.1 1,580,175 - HP15_1503 0.29 -1.2 1,580,175 - HP15_1503 0.29 -0.6 1,580,175 - HP15_1503 0.29 +0.7 1,580,210 + HP15_1503 0.33 -0.1 1,580,278 + HP15_1503 0.40 -0.3 1,580,361 - HP15_1503 0.49 +0.2 1,580,540 - HP15_1503 0.69 +0.1 1,580,600 + HP15_1503 0.75 -1.5
Or see this region's nucleotide sequence