Strain Fitness in Marinobacter adhaerens HP15 around HP15_1336

Experiment: marine broth

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_1334 and HP15_1335 are separated by 9 nucleotidesHP15_1335 and HP15_1336 are separated by 116 nucleotidesHP15_1336 and HP15_1337 are separated by 62 nucleotidesHP15_1337 and HP15_1338 are separated by 469 nucleotides HP15_1334: HP15_1334 - Error-prone polymerase for DNA repair (imuB or polY like) (from data), at 1,402,295 to 1,403,713 _1334 HP15_1335: HP15_1335 - uncharacterized conserved protein UCP037290, at 1,403,723 to 1,404,412 _1335 HP15_1336: HP15_1336 - pterin-4-alpha-carbinolamine dehydratase, at 1,404,529 to 1,404,888 _1336 HP15_1337: HP15_1337 - conserved hypothetical protein, membrane, at 1,404,951 to 1,405,226 _1337 HP15_1338: HP15_1338 - conserved hypothetical protein, at 1,405,696 to 1,406,055 _1338 Position (kb) 1404 1405Strain fitness (log2 ratio) -2 -1 0 1 2at 1403.605 kb on - strandat 1403.755 kb on - strandat 1403.780 kb on - strandat 1403.917 kb on - strand, within HP15_1335at 1403.919 kb on + strand, within HP15_1335at 1403.932 kb on + strand, within HP15_1335at 1403.949 kb on - strand, within HP15_1335at 1403.974 kb on + strand, within HP15_1335at 1404.095 kb on + strand, within HP15_1335at 1404.105 kb on + strand, within HP15_1335at 1404.108 kb on - strand, within HP15_1335at 1404.136 kb on + strand, within HP15_1335at 1404.278 kb on + strand, within HP15_1335at 1404.361 kb on + strandat 1404.381 kb on + strandat 1404.403 kb on - strandat 1404.549 kb on + strandat 1404.564 kb on - strandat 1404.571 kb on - strand, within HP15_1336at 1404.710 kb on + strand, within HP15_1336at 1404.718 kb on - strand, within HP15_1336at 1404.847 kb on - strand, within HP15_1336at 1404.847 kb on - strand, within HP15_1336at 1404.876 kb on - strandat 1404.954 kb on + strandat 1404.990 kb on - strand, within HP15_1337at 1405.034 kb on - strand, within HP15_1337at 1405.271 kb on - strandat 1405.396 kb on + strandat 1405.401 kb on + strandat 1405.401 kb on + strandat 1405.409 kb on - strandat 1405.409 kb on - strandat 1405.409 kb on - strandat 1405.642 kb on + strandat 1405.684 kb on - strandat 1405.689 kb on - strandat 1405.713 kb on - strandat 1405.813 kb on - strand, within HP15_1338at 1405.817 kb on + strand, within HP15_1338at 1405.856 kb on + strand, within HP15_1338

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
remove
1,403,605 - +0.3
1,403,755 - +0.1
1,403,780 - -0.4
1,403,917 - HP15_1335 0.28 -0.1
1,403,919 + HP15_1335 0.28 +0.8
1,403,932 + HP15_1335 0.30 -0.1
1,403,949 - HP15_1335 0.33 -1.1
1,403,974 + HP15_1335 0.36 +0.6
1,404,095 + HP15_1335 0.54 +0.4
1,404,105 + HP15_1335 0.55 -1.2
1,404,108 - HP15_1335 0.56 -1.1
1,404,136 + HP15_1335 0.60 -0.6
1,404,278 + HP15_1335 0.80 -0.2
1,404,361 + +0.2
1,404,381 + -0.6
1,404,403 - +0.1
1,404,549 + -1.1
1,404,564 - -0.3
1,404,571 - HP15_1336 0.12 +1.0
1,404,710 + HP15_1336 0.50 -0.4
1,404,718 - HP15_1336 0.53 +0.9
1,404,847 - HP15_1336 0.88 -0.5
1,404,847 - HP15_1336 0.88 +2.4
1,404,876 - +0.6
1,404,954 + -2.0
1,404,990 - HP15_1337 0.14 -0.6
1,405,034 - HP15_1337 0.30 -0.9
1,405,271 - +0.0
1,405,396 + +0.4
1,405,401 + -0.3
1,405,401 + -0.1
1,405,409 - -0.4
1,405,409 - +0.1
1,405,409 - -0.1
1,405,642 + +1.1
1,405,684 - +0.4
1,405,689 - -0.6
1,405,713 - -1.1
1,405,813 - HP15_1338 0.33 -0.2
1,405,817 + HP15_1338 0.34 -0.4
1,405,856 + HP15_1338 0.44 -0.2

Or see this region's nucleotide sequence