Strain Fitness in Shewanella amazonensis SB2B around Sama_3135

Experiment: L-Serine (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Serine (N)
3,722,313	-		Sama_3133	0.57	-2.8
3,722,313	-		Sama_3133	0.57	-0.2
3,722,323	+		Sama_3133	0.59	+0.9
3,722,337	+		Sama_3133	0.60	-1.3
3,722,337	+		Sama_3133	0.60	+0.6
3,722,338	-		Sama_3133	0.60	+0.5
3,722,590	+		Sama_3133	0.88	-0.1
3,722,590	+		Sama_3133	0.88	-0.2
3,722,591	-		Sama_3133	0.88	-1.0
3,722,616	+				-1.7
3,722,617	-				-0.7
3,722,728	+				+0.3
3,722,729	-				+0.6
3,722,765	-		Sama_3134	0.13	+0.2
3,722,765	-		Sama_3134	0.13	+1.0
3,722,766	+		Sama_3134	0.13	+1.6
3,722,766	+		Sama_3134	0.13	+0.2
3,722,766	+		Sama_3134	0.13	+0.6
3,722,766	+		Sama_3134	0.13	-1.3
3,722,766	+		Sama_3134	0.13	-0.1
3,722,766	+		Sama_3134	0.13	-0.5
3,722,766	+		Sama_3134	0.13	+1.2
3,722,766	+		Sama_3134	0.13	-0.6
3,722,766	+		Sama_3134	0.13	+0.9
3,722,766	+		Sama_3134	0.13	+0.3
3,722,767	-		Sama_3134	0.13	-0.0
3,722,767	-		Sama_3134	0.13	-0.4
3,722,767	-		Sama_3134	0.13	+2.6
3,722,767	-		Sama_3134	0.13	+0.4
3,722,767	-		Sama_3134	0.13	+0.8
3,722,767	-		Sama_3134	0.13	-0.2
3,722,767	-		Sama_3134	0.13	-0.7
3,722,767	-		Sama_3134	0.13	-0.7
3,722,767	-		Sama_3134	0.13	-2.3
3,722,767	-		Sama_3134	0.13	-1.0
3,722,767	-		Sama_3134	0.13	+1.2
3,722,767	-		Sama_3134	0.13	+0.4
3,722,767	-		Sama_3134	0.13	+0.0
3,722,767	-		Sama_3134	0.13	-0.5
3,722,767	-		Sama_3134	0.13	-0.5
3,722,767	-		Sama_3134	0.13	+0.0
3,722,767	-		Sama_3134	0.13	-0.2
3,722,767	-		Sama_3134	0.13	-0.7
3,722,767	-		Sama_3134	0.13	+0.3
3,722,767	-		Sama_3134	0.13	-0.2
3,722,767	-		Sama_3134	0.13	+0.4
3,722,767	-		Sama_3134	0.13	+0.9
3,722,767	-		Sama_3134	0.13	+0.6
3,722,794	+		Sama_3134	0.18	-1.4
3,722,824	+		Sama_3134	0.24	+0.7
3,722,873	+		Sama_3134	0.34	+0.5
3,722,873	+		Sama_3134	0.34	+0.5
3,722,873	+		Sama_3134	0.34	-0.7
3,722,873	+		Sama_3134	0.34	-0.7
3,722,874	-		Sama_3134	0.34	-0.1
3,722,874	-		Sama_3134	0.34	+0.2
3,722,885	-		Sama_3134	0.37	-1.4
3,722,938	+		Sama_3134	0.47	-0.4
3,722,939	-		Sama_3134	0.47	+0.1
3,722,950	-		Sama_3134	0.50	-0.6
3,722,950	-		Sama_3134	0.50	+0.1
3,722,976	-		Sama_3134	0.55	-1.0
3,723,032	-		Sama_3134	0.66	-0.2
3,723,060	+		Sama_3134	0.71	-0.5
3,723,061	-		Sama_3134	0.72	-0.1
3,723,109	+		Sama_3134	0.81	+0.3
3,723,110	-		Sama_3134	0.81	-1.0
3,723,110	-		Sama_3134	0.81	+0.2
3,723,133	+		Sama_3134	0.86	+0.5
3,723,133	+		Sama_3134	0.86	-0.6
3,723,133	+		Sama_3134	0.86	-1.1
3,723,134	-		Sama_3134	0.86	+1.4
3,723,134	-		Sama_3134	0.86	-0.0
3,723,222	-				-0.8
3,723,227	+				+0.3
3,723,227	+				+0.0
3,723,228	-				-0.4
3,723,264	+				-1.0
3,723,265	-				+0.2
3,723,300	+				+0.4
3,723,301	-				+0.6
3,723,324	+				-2.6
3,723,324	+				-0.8
3,723,324	+				-1.6
3,723,325	-				-0.7
3,723,340	+				+1.4
3,723,399	+		Sama_3135	0.12	-0.3
3,723,399	+		Sama_3135	0.12	+0.2
3,723,399	+		Sama_3135	0.12	-1.7
3,723,399	+		Sama_3135	0.12	-0.2
3,723,400	-		Sama_3135	0.13	-0.1
3,723,430	+		Sama_3135	0.16	-0.5
3,723,430	+		Sama_3135	0.16	+0.5
3,723,431	-		Sama_3135	0.16	-0.1
3,723,431	-		Sama_3135	0.16	+0.2
3,723,445	+		Sama_3135	0.18	+0.9
3,723,445	+		Sama_3135	0.18	+0.8
3,723,445	+		Sama_3135	0.18	+0.5
3,723,497	+		Sama_3135	0.25	-2.7
3,723,497	+		Sama_3135	0.25	+0.6
3,723,498	-		Sama_3135	0.25	+1.5
3,723,498	-		Sama_3135	0.25	-0.3
3,723,498	-		Sama_3135	0.25	-1.1
3,723,529	+		Sama_3135	0.29	-0.7
3,723,529	+		Sama_3135	0.29	-0.7
3,723,530	-		Sama_3135	0.29	-1.3
3,723,632	+		Sama_3135	0.41	-1.0
3,723,633	-		Sama_3135	0.41	-1.8
3,723,691	+		Sama_3135	0.49	-0.4
3,723,692	-		Sama_3135	0.49	-0.1
3,723,768	+		Sama_3135	0.58	-0.2
3,723,768	+		Sama_3135	0.58	-1.1
3,723,769	-		Sama_3135	0.58	-0.9
3,723,787	+		Sama_3135	0.60	-0.3
3,723,788	-		Sama_3135	0.61	+0.2
3,723,788	-		Sama_3135	0.61	-0.6
3,723,907	+		Sama_3135	0.75	+0.0
3,723,907	+		Sama_3135	0.75	-0.4
3,723,908	-		Sama_3135	0.75	-1.0
3,723,947	+		Sama_3135	0.80	-1.9
3,723,947	+		Sama_3135	0.80	-0.2
3,723,948	-		Sama_3135	0.80	-1.3
3,723,948	-		Sama_3135	0.80	+0.1
3,724,049	+				+0.2
3,724,049	+				+0.0
3,724,049	+				+0.0
3,724,050	-				+0.2
3,724,064	+				+0.3
3,724,077	-				+0.4
3,724,077	-				+0.0
3,724,115	+				+0.7
3,724,116	-				+0.1
3,724,116	-				+1.6
3,724,116	-				+0.9
3,724,146	-				-0.4
3,724,146	-				+0.3
3,724,146	-				+1.9
3,724,146	-				-1.8
3,724,221	+				-0.4
3,724,253	-				-1.2
3,724,253	-				+0.2
3,724,352	+				-2.4
3,724,352	+				+0.3
3,724,353	-				-0.0
3,724,353	-				-1.1
3,724,361	+				+1.6
3,724,361	+				+3.4
3,724,361	+				-0.8
3,724,362	-				+1.7
3,724,383	+				-1.3
3,724,383	+				+0.4
3,724,383	+				+1.0
3,724,384	-				+0.1
3,724,405	+				+0.5
3,724,406	-				+0.8
3,724,411	+				+3.3
3,724,411	+				-1.6
3,724,411	+				-0.1
3,724,411	+				-1.7
3,724,411	+				+0.1
3,724,411	+				-2.0
3,724,411	+				+0.2
3,724,411	+				-0.4
3,724,411	+				+1.2
3,724,411	+				+0.2
3,724,412	-				+0.8
3,724,412	-				-0.7
3,724,412	-				+0.3
3,724,412	-				-0.8
3,724,412	-				-0.7
3,724,412	-				+0.4
3,724,481	+				+1.0
3,724,481	+				-2.8
3,724,481	+				-0.0
3,724,481	+				+0.5
3,724,481	+				-0.4
3,724,481	+				-1.8
3,724,482	-				+0.4
3,724,482	-				-0.2
3,724,482	-				+0.4
3,724,559	+		Sama_3136	0.17	-0.8
3,724,559	+		Sama_3136	0.17	-0.4
3,724,559	+		Sama_3136	0.17	+0.3
3,724,559	+		Sama_3136	0.17	+0.5
3,724,559	+		Sama_3136	0.17	-0.2
3,724,560	-		Sama_3136	0.17	+0.5
3,724,578	+		Sama_3136	0.18	+0.3
3,724,579	-		Sama_3136	0.19	+0.7
3,724,585	+		Sama_3136	0.19	-0.8
3,724,585	+		Sama_3136	0.19	+0.2
3,724,613	-		Sama_3136	0.22	-0.3
3,724,628	-		Sama_3136	0.23	+0.5
3,724,628	-		Sama_3136	0.23	+0.1
3,724,628	-		Sama_3136	0.23	+2.1
3,724,628	-		Sama_3136	0.23	-0.1
3,724,652	+		Sama_3136	0.26	-0.0
3,724,724	-		Sama_3136	0.33	-0.2
3,724,748	+		Sama_3136	0.35	+0.2
3,724,801	+		Sama_3136	0.41	+0.4
3,724,868	-		Sama_3136	0.47	-0.2
3,724,939	+		Sama_3136	0.54	-1.2
3,724,939	+		Sama_3136	0.54	+0.3
3,724,939	+		Sama_3136	0.54	-0.3
3,724,940	-		Sama_3136	0.54	-0.0
3,724,940	-		Sama_3136	0.54	+0.1
3,724,940	-		Sama_3136	0.54	+0.0
3,725,001	-		Sama_3136	0.60	-0.4