Strain Fitness in Shewanella amazonensis SB2B around Sama_2835

Experiment: L-Serine (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Serine (N)
3,371,355	+		Sama_2834	0.47	+0.8
3,371,529	+		Sama_2834	0.59	+0.6
3,371,529	+		Sama_2834	0.59	+0.6
3,371,529	+		Sama_2834	0.59	+0.2
3,371,529	+		Sama_2834	0.59	-1.9
3,371,530	-		Sama_2834	0.59	-0.2
3,371,530	-		Sama_2834	0.59	+0.6
3,371,536	-		Sama_2834	0.60	+1.4
3,371,688	+		Sama_2834	0.70	+0.6
3,371,688	+		Sama_2834	0.70	-0.6
3,371,688	+		Sama_2834	0.70	-0.9
3,371,688	+		Sama_2834	0.70	+0.1
3,371,689	-		Sama_2834	0.71	-0.3
3,371,689	-		Sama_2834	0.71	-1.8
3,371,721	+		Sama_2834	0.73	-0.0
3,371,821	+		Sama_2834	0.80	+0.2
3,371,821	+		Sama_2834	0.80	-0.5
3,371,821	+		Sama_2834	0.80	+1.0
3,371,821	+		Sama_2834	0.80	-0.2
3,371,822	-		Sama_2834	0.80	-0.3
3,371,822	-		Sama_2834	0.80	+0.3
3,371,822	-		Sama_2834	0.80	+1.3
3,371,960	+		Sama_2834	0.90	-1.8
3,371,961	-		Sama_2834	0.90	-1.1
3,371,973	+				-0.6
3,371,974	-				+0.5
3,371,974	-				-0.4
3,371,974	-				-0.1
3,372,044	+				-0.7
3,372,111	+				+0.8
3,372,111	+				+0.2
3,372,112	-				-0.1
3,372,210	+				+0.4
3,372,210	+				+0.5
3,372,211	-				+0.7
3,372,213	-				+0.1
3,372,268	-				+0.5
3,372,349	-				-2.1
3,372,349	-				-0.2
3,372,349	-				+1.6
3,372,411	+				+1.4
3,372,411	+				-2.0
3,372,412	-				+0.9
3,372,412	-				-0.3
3,372,427	+				+1.8
3,372,428	-				+0.0
3,372,465	+				-0.1
3,372,466	-				-2.1
3,372,466	-				-1.0
3,372,466	-				-2.3
3,372,634	-		Sama_2835	0.19	+0.8
3,372,723	+		Sama_2835	0.25	-1.9
3,372,724	-		Sama_2835	0.25	-0.4
3,372,724	-		Sama_2835	0.25	-1.5
3,372,724	-		Sama_2835	0.25	-0.0
3,372,744	+		Sama_2835	0.26	+1.1
3,372,809	+		Sama_2835	0.31	-1.3
3,372,834	+		Sama_2835	0.32	+0.3
3,372,834	+		Sama_2835	0.32	+0.5
3,372,834	+		Sama_2835	0.32	-0.1
3,372,835	-		Sama_2835	0.32	+1.3
3,372,835	-		Sama_2835	0.32	-0.9
3,372,992	-		Sama_2835	0.43	-0.0
3,372,992	-		Sama_2835	0.43	-0.2
3,373,015	+		Sama_2835	0.44	-0.1
3,373,015	+		Sama_2835	0.44	+2.4
3,373,016	-		Sama_2835	0.44	-0.8
3,373,016	-		Sama_2835	0.44	+0.5
3,373,087	+		Sama_2835	0.49	-0.7
3,373,088	-		Sama_2835	0.49	-0.3
3,373,088	-		Sama_2835	0.49	-0.9
3,373,138	+		Sama_2835	0.52	-1.2
3,373,138	+		Sama_2835	0.52	+0.7
3,373,139	-		Sama_2835	0.52	+0.2
3,373,189	+		Sama_2835	0.55	-1.2
3,373,189	+		Sama_2835	0.55	+1.5
3,373,189	+		Sama_2835	0.55	-1.5
3,373,189	+		Sama_2835	0.55	+0.8
3,373,190	-		Sama_2835	0.55	-0.2
3,373,190	-		Sama_2835	0.55	+0.6
3,373,266	+		Sama_2835	0.60	-2.4
3,373,266	+		Sama_2835	0.60	-0.8
3,373,266	+		Sama_2835	0.60	+0.1
3,373,321	+		Sama_2835	0.64	-0.0
3,373,321	+		Sama_2835	0.64	+0.2
3,373,322	-		Sama_2835	0.64	+0.3
3,373,322	-		Sama_2835	0.64	-1.0
3,373,322	-		Sama_2835	0.64	-0.5
3,373,322	-		Sama_2835	0.64	+0.8
3,373,322	-		Sama_2835	0.64	-0.3
3,373,322	-		Sama_2835	0.64	-0.0
3,373,322	-		Sama_2835	0.64	+2.7
3,373,385	-		Sama_2835	0.68	+0.0
3,373,385	-		Sama_2835	0.68	-2.4
3,373,386	+		Sama_2835	0.68	+1.8
3,373,386	+		Sama_2835	0.68	+0.4
3,373,386	+		Sama_2835	0.68	-0.8
3,373,386	+		Sama_2835	0.68	+0.3
3,373,387	-		Sama_2835	0.68	-0.4
3,373,387	-		Sama_2835	0.68	-1.4
3,373,387	-		Sama_2835	0.68	-0.9
3,373,387	-		Sama_2835	0.68	-1.9
3,373,387	-		Sama_2835	0.68	-0.8
3,373,398	+		Sama_2835	0.69	+0.2
3,373,492	-		Sama_2835	0.75	+0.1
3,373,533	+		Sama_2835	0.78	-0.2
3,373,571	-		Sama_2835	0.80	+0.7
3,373,606	+		Sama_2835	0.82	-0.4
3,373,606	+		Sama_2835	0.82	-0.6
3,373,606	+		Sama_2835	0.82	-1.0
3,373,606	+		Sama_2835	0.82	-1.2
3,373,606	+		Sama_2835	0.82	+2.0
3,373,606	+		Sama_2835	0.82	-1.9
3,373,606	+		Sama_2835	0.82	-0.2
3,373,607	-		Sama_2835	0.83	+0.2
3,373,607	-		Sama_2835	0.83	-0.7
3,373,607	-		Sama_2835	0.83	-0.4
3,373,614	+		Sama_2835	0.83	-0.2
3,373,627	-		Sama_2835	0.84	-0.8
3,373,648	+		Sama_2835	0.85	-0.3
3,373,648	+		Sama_2835	0.85	+1.3
3,373,648	+		Sama_2835	0.85	-1.5
3,373,648	+		Sama_2835	0.85	-0.4
3,373,648	+		Sama_2835	0.85	-0.4
3,373,648	+		Sama_2835	0.85	-0.5
3,373,649	-		Sama_2835	0.85	-0.3
3,373,649	-		Sama_2835	0.85	+0.2
3,373,649	-		Sama_2835	0.85	-0.2
3,373,649	-		Sama_2835	0.85	+0.6
3,373,649	-		Sama_2835	0.85	+0.3
3,373,649	-		Sama_2835	0.85	+0.6
3,373,955	+				-1.6
3,373,969	+				-0.3
3,373,969	+				-2.3
3,373,969	+				+0.9
3,373,969	+				+1.5
3,373,970	-				+0.5
3,373,986	+				+0.3
3,373,986	+				+0.9
3,373,986	+				-0.0
3,374,083	+		Sama_2836	0.15	-0.9
3,374,083	+		Sama_2836	0.15	-0.9
3,374,150	+		Sama_2836	0.27	-1.1
3,374,150	+		Sama_2836	0.27	-2.1
3,374,150	+		Sama_2836	0.27	-0.2
3,374,151	-		Sama_2836	0.27	+0.9
3,374,151	-		Sama_2836	0.27	+0.1
3,374,151	-		Sama_2836	0.27	+0.6
3,374,151	-		Sama_2836	0.27	-0.4
3,374,151	-		Sama_2836	0.27	+1.4
3,374,151	-		Sama_2836	0.27	-0.0
3,374,151	-		Sama_2836	0.27	+2.1
3,374,196	+		Sama_2836	0.36	-0.5
3,374,246	+		Sama_2836	0.45	-0.3
3,374,246	+		Sama_2836	0.45	+0.6
3,374,247	-		Sama_2836	0.45	+0.7
3,374,247	-		Sama_2836	0.45	+0.1
3,374,310	+		Sama_2836	0.57	+0.6
3,374,310	+		Sama_2836	0.57	-0.2
3,374,355	+		Sama_2836	0.65	+1.3
3,374,355	+		Sama_2836	0.65	+2.4
3,374,355	+		Sama_2836	0.65	-0.5
3,374,355	+		Sama_2836	0.65	-0.5
3,374,355	+		Sama_2836	0.65	+0.8
3,374,355	+		Sama_2836	0.65	-0.4
3,374,356	-		Sama_2836	0.65	-0.2
3,374,356	-		Sama_2836	0.65	-0.3
3,374,356	-		Sama_2836	0.65	-1.9
3,374,356	-		Sama_2836	0.65	+1.0
3,374,408	+		Sama_2836	0.75	-0.0
3,374,408	+		Sama_2836	0.75	+1.1
3,374,418	+		Sama_2836	0.77	-0.8
3,374,418	+		Sama_2836	0.77	-1.5
3,374,418	+		Sama_2836	0.77	+0.6
3,374,418	+		Sama_2836	0.77	+0.1
3,374,418	+		Sama_2836	0.77	+0.2
3,374,419	-		Sama_2836	0.77	-0.1
3,374,419	-		Sama_2836	0.77	+0.5
3,374,440	+		Sama_2836	0.81	-1.0
3,374,440	+		Sama_2836	0.81	+0.4
3,374,441	-		Sama_2836	0.81	-0.2
3,374,441	-		Sama_2836	0.81	+0.3
3,374,450	+		Sama_2836	0.83	+0.0
3,374,451	-		Sama_2836	0.83	-1.6
3,374,478	+		Sama_2836	0.88	-0.3
3,374,478	+		Sama_2836	0.88	-0.8
3,374,478	+		Sama_2836	0.88	-0.5
3,374,478	+		Sama_2836	0.88	-0.2
3,374,478	+		Sama_2836	0.88	+0.7
3,374,478	+		Sama_2836	0.88	+1.3
3,374,478	+		Sama_2836	0.88	+0.3
3,374,479	-		Sama_2836	0.88	-0.5
3,374,479	-		Sama_2836	0.88	-0.3
3,374,479	-		Sama_2836	0.88	+1.6
3,374,479	-		Sama_2836	0.88	+0.3
3,374,613	+				+2.9
3,374,613	+				+0.7
3,374,614	-				+0.1
3,374,614	-				+2.0
3,374,614	-				-2.5
3,374,720	+		Sama_2837	0.15	-2.4
3,374,720	+		Sama_2837	0.15	-3.9
3,374,720	+		Sama_2837	0.15	-3.6
3,374,721	-		Sama_2837	0.15	-1.7
3,374,721	-		Sama_2837	0.15	-4.3
3,374,721	-		Sama_2837	0.15	-4.2
3,374,724	+		Sama_2837	0.15	-2.1
3,374,724	+		Sama_2837	0.15	-2.1
3,374,724	+		Sama_2837	0.15	-2.9
3,374,724	+		Sama_2837	0.15	-3.7
3,374,724	+		Sama_2837	0.15	-0.9
3,374,725	-		Sama_2837	0.16	-2.6
3,374,725	-		Sama_2837	0.16	-2.0
3,374,725	-		Sama_2837	0.16	-4.9
3,374,725	-		Sama_2837	0.16	-3.2
3,374,725	-		Sama_2837	0.16	-0.2
3,374,772	+		Sama_2837	0.22	-1.9
3,374,772	+		Sama_2837	0.22	-1.5
3,374,773	-		Sama_2837	0.22	-3.7
3,374,773	-		Sama_2837	0.22	-3.1
3,374,773	-		Sama_2837	0.22	-3.2
3,374,818	+		Sama_2837	0.28	-3.8
3,374,819	-		Sama_2837	0.28	-3.8