Experiment: a-Ketoglutaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_3826 and Dshi_3827 are separated by 41 nucleotides Dshi_3827 and Dshi_3828 are separated by 37 nucleotides Dshi_3828 and Dshi_3829 are separated by 127 nucleotides
Dshi_3826: Dshi_3826 - 3-hydroxyacyl-CoA dehydrogenase NAD-binding (RefSeq), at 32,430 to 34,451
_3826
Dshi_3827: Dshi_3827 - phenylacetic acid degradation protein paaN (RefSeq), at 34,493 to 36,529
_3827
Dshi_3828: Dshi_3828 - putative transcriptional regulator, PaaX family (RefSeq), at 36,567 to 37,361
_3828
Dshi_3829: Dshi_3829 - hypothetical protein (RefSeq), at 37,489 to 37,941
_3829
Position (kb) 34
35
36
37 Strain fitness (log2 ratio) -1
0
1
2 at 33.515 kb on + strand, within Dshi_3826 at 33.666 kb on + strand, within Dshi_3826 at 33.994 kb on - strand, within Dshi_3826 at 34.047 kb on + strand, within Dshi_3826 at 34.196 kb on - strand, within Dshi_3826 at 34.212 kb on + strand, within Dshi_3826 at 34.212 kb on + strand, within Dshi_3826 at 34.354 kb on + strand at 34.491 kb on + strand at 34.535 kb on - strand at 34.656 kb on + strand at 34.712 kb on + strand, within Dshi_3827 at 34.756 kb on - strand, within Dshi_3827 at 34.817 kb on + strand, within Dshi_3827 at 34.817 kb on + strand, within Dshi_3827 at 34.825 kb on - strand, within Dshi_3827 at 34.825 kb on - strand, within Dshi_3827 at 34.929 kb on - strand, within Dshi_3827 at 34.986 kb on - strand, within Dshi_3827 at 35.169 kb on + strand, within Dshi_3827 at 35.169 kb on + strand, within Dshi_3827 at 35.306 kb on + strand, within Dshi_3827 at 35.465 kb on - strand, within Dshi_3827 at 35.583 kb on - strand, within Dshi_3827 at 35.594 kb on - strand, within Dshi_3827 at 35.594 kb on - strand, within Dshi_3827 at 35.907 kb on + strand, within Dshi_3827 at 35.917 kb on + strand, within Dshi_3827 at 35.963 kb on - strand, within Dshi_3827 at 36.018 kb on + strand, within Dshi_3827 at 36.072 kb on + strand, within Dshi_3827 at 36.155 kb on + strand, within Dshi_3827 at 36.336 kb on - strand at 36.432 kb on - strand at 36.575 kb on - strand at 36.612 kb on + strand at 36.626 kb on + strand at 36.626 kb on + strand at 36.644 kb on - strand at 36.668 kb on + strand, within Dshi_3828 at 36.691 kb on - strand, within Dshi_3828 at 36.696 kb on - strand, within Dshi_3828 at 36.798 kb on + strand, within Dshi_3828 at 36.923 kb on + strand, within Dshi_3828 at 36.941 kb on - strand, within Dshi_3828 at 37.064 kb on - strand, within Dshi_3828 at 37.080 kb on + strand, within Dshi_3828 at 37.102 kb on + strand, within Dshi_3828 at 37.255 kb on + strand, within Dshi_3828 at 37.263 kb on - strand, within Dshi_3828 at 37.270 kb on + strand, within Dshi_3828 at 37.365 kb on - strand at 37.454 kb on - strand at 37.511 kb on + strand at 37.517 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction a-Ketoglutaric (C) remove 33,515 + Dshi_3826 0.54 +0.1 33,666 + Dshi_3826 0.61 +0.1 33,994 - Dshi_3826 0.77 +0.3 34,047 + Dshi_3826 0.80 +0.3 34,196 - Dshi_3826 0.87 +0.1 34,212 + Dshi_3826 0.88 -0.2 34,212 + Dshi_3826 0.88 +0.8 34,354 + +0.1 34,491 + +0.3 34,535 - +0.3 34,656 + +1.2 34,712 + Dshi_3827 0.11 +0.0 34,756 - Dshi_3827 0.13 +0.7 34,817 + Dshi_3827 0.16 +1.0 34,817 + Dshi_3827 0.16 +0.2 34,825 - Dshi_3827 0.16 +0.4 34,825 - Dshi_3827 0.16 +0.6 34,929 - Dshi_3827 0.21 -1.0 34,986 - Dshi_3827 0.24 +0.4 35,169 + Dshi_3827 0.33 +0.2 35,169 + Dshi_3827 0.33 -0.7 35,306 + Dshi_3827 0.40 +0.7 35,465 - Dshi_3827 0.48 -0.0 35,583 - Dshi_3827 0.54 -0.8 35,594 - Dshi_3827 0.54 -0.1 35,594 - Dshi_3827 0.54 -1.0 35,907 + Dshi_3827 0.69 +1.8 35,917 + Dshi_3827 0.70 -0.2 35,963 - Dshi_3827 0.72 -0.1 36,018 + Dshi_3827 0.75 -0.3 36,072 + Dshi_3827 0.78 +0.0 36,155 + Dshi_3827 0.82 +0.6 36,336 - +0.7 36,432 - +2.0 36,575 - +0.1 36,612 + -0.7 36,626 + -1.5 36,626 + +0.0 36,644 - -0.1 36,668 + Dshi_3828 0.13 -0.6 36,691 - Dshi_3828 0.16 -1.1 36,696 - Dshi_3828 0.16 +0.1 36,798 + Dshi_3828 0.29 -0.1 36,923 + Dshi_3828 0.45 -0.2 36,941 - Dshi_3828 0.47 -0.5 37,064 - Dshi_3828 0.63 -0.1 37,080 + Dshi_3828 0.65 -0.2 37,102 + Dshi_3828 0.67 -0.1 37,255 + Dshi_3828 0.87 -0.7 37,263 - Dshi_3828 0.88 -0.7 37,270 + Dshi_3828 0.88 -0.4 37,365 - +0.4 37,454 - -0.0 37,511 + -1.4 37,517 + -0.3
Or see this region's nucleotide sequence