Experiment: m.b. Vanillin 1.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c08750 and PGA1_c08755 are separated by 81 nucleotides PGA1_c08755 and PGA1_c08760 overlap by 1 nucleotides PGA1_c08760 and PGA1_c08770 overlap by 8 nucleotides PGA1_c08770 and PGA1_c08780 are separated by 38 nucleotides PGA1_c08780 and PGA1_c08790 are separated by 1 nucleotides
PGA1_c08750: PGA1_c08750 - sarcosine oxidase subunit beta, at 901,787 to 903,040
_c08750
PGA1_c08755: PGA1_c08755 - sarcosine oxidase subunit delta, at 903,122 to 903,382
_c08755
PGA1_c08760: PGA1_c08760 - sarcosine oxidase subunit alpha, at 903,382 to 906,303
_c08760
PGA1_c08770: PGA1_c08770 - putative sarcosine oxidase, subunit gamma, at 906,296 to 906,841
_c08770
PGA1_c08780: PGA1_c08780 - hypothetical protein, at 906,880 to 907,218
_c08780
PGA1_c08790: PGA1_c08790 - DNA primase DnaG, at 907,220 to 909,469
_c08790
Position (kb) 903
904
905
906
907 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 902.394 kb on + strand, within PGA1_c08750 at 902.440 kb on - strand, within PGA1_c08750 at 902.456 kb on + strand, within PGA1_c08750 at 902.456 kb on + strand, within PGA1_c08750 at 902.464 kb on - strand, within PGA1_c08750 at 902.464 kb on - strand, within PGA1_c08750 at 902.464 kb on - strand, within PGA1_c08750 at 902.464 kb on - strand, within PGA1_c08750 at 902.464 kb on - strand, within PGA1_c08750 at 902.464 kb on - strand, within PGA1_c08750 at 902.508 kb on - strand, within PGA1_c08750 at 902.525 kb on + strand, within PGA1_c08750 at 902.525 kb on + strand, within PGA1_c08750 at 902.533 kb on - strand, within PGA1_c08750 at 902.540 kb on + strand, within PGA1_c08750 at 902.577 kb on + strand, within PGA1_c08750 at 902.585 kb on - strand, within PGA1_c08750 at 902.645 kb on - strand, within PGA1_c08750 at 902.670 kb on + strand, within PGA1_c08750 at 902.670 kb on + strand, within PGA1_c08750 at 902.704 kb on - strand, within PGA1_c08750 at 902.856 kb on + strand, within PGA1_c08750 at 902.859 kb on - strand, within PGA1_c08750 at 902.909 kb on - strand, within PGA1_c08750 at 902.911 kb on + strand, within PGA1_c08750 at 902.911 kb on + strand, within PGA1_c08750 at 902.943 kb on - strand at 903.010 kb on + strand at 903.025 kb on + strand at 903.039 kb on + strand at 903.039 kb on + strand at 903.039 kb on + strand at 903.073 kb on + strand at 903.104 kb on + strand at 903.104 kb on + strand at 903.112 kb on - strand at 903.120 kb on - strand at 903.127 kb on - strand at 903.141 kb on + strand at 903.213 kb on + strand, within PGA1_c08755 at 903.213 kb on + strand, within PGA1_c08755 at 903.213 kb on + strand, within PGA1_c08755 at 903.213 kb on + strand, within PGA1_c08755 at 903.213 kb on + strand, within PGA1_c08755 at 903.213 kb on + strand, within PGA1_c08755 at 903.213 kb on + strand, within PGA1_c08755 at 903.213 kb on + strand, within PGA1_c08755 at 903.213 kb on + strand, within PGA1_c08755 at 903.213 kb on + strand, within PGA1_c08755 at 903.221 kb on - strand, within PGA1_c08755 at 903.221 kb on - strand, within PGA1_c08755 at 903.221 kb on - strand, within PGA1_c08755 at 903.221 kb on - strand, within PGA1_c08755 at 903.221 kb on - strand, within PGA1_c08755 at 903.247 kb on + strand, within PGA1_c08755 at 903.301 kb on - strand, within PGA1_c08755 at 903.595 kb on - strand at 903.619 kb on - strand at 903.624 kb on + strand at 903.632 kb on - strand at 903.697 kb on - strand, within PGA1_c08760 at 903.703 kb on + strand, within PGA1_c08760 at 903.754 kb on + strand, within PGA1_c08760 at 903.762 kb on - strand, within PGA1_c08760 at 903.762 kb on - strand, within PGA1_c08760 at 903.764 kb on + strand, within PGA1_c08760 at 903.772 kb on - strand, within PGA1_c08760 at 903.873 kb on - strand, within PGA1_c08760 at 903.873 kb on - strand, within PGA1_c08760 at 903.920 kb on - strand, within PGA1_c08760 at 903.952 kb on + strand, within PGA1_c08760 at 903.957 kb on - strand, within PGA1_c08760 at 904.000 kb on + strand, within PGA1_c08760 at 904.040 kb on - strand, within PGA1_c08760 at 904.057 kb on + strand, within PGA1_c08760 at 904.057 kb on + strand, within PGA1_c08760 at 904.057 kb on + strand, within PGA1_c08760 at 904.057 kb on + strand, within PGA1_c08760 at 904.065 kb on - strand, within PGA1_c08760 at 904.098 kb on - strand, within PGA1_c08760 at 904.189 kb on - strand, within PGA1_c08760 at 904.226 kb on + strand, within PGA1_c08760 at 904.274 kb on + strand, within PGA1_c08760 at 904.278 kb on + strand, within PGA1_c08760 at 904.278 kb on + strand, within PGA1_c08760 at 904.278 kb on + strand, within PGA1_c08760 at 904.278 kb on + strand, within PGA1_c08760 at 904.286 kb on - strand, within PGA1_c08760 at 904.286 kb on - strand, within PGA1_c08760 at 904.339 kb on - strand, within PGA1_c08760 at 904.341 kb on - strand, within PGA1_c08760 at 904.396 kb on - strand, within PGA1_c08760 at 904.404 kb on - strand, within PGA1_c08760 at 904.421 kb on - strand, within PGA1_c08760 at 904.435 kb on + strand, within PGA1_c08760 at 904.440 kb on + strand, within PGA1_c08760 at 904.445 kb on - strand, within PGA1_c08760 at 904.458 kb on + strand, within PGA1_c08760 at 904.466 kb on - strand, within PGA1_c08760 at 904.468 kb on + strand, within PGA1_c08760 at 904.476 kb on - strand, within PGA1_c08760 at 904.476 kb on - strand, within PGA1_c08760 at 904.486 kb on - strand, within PGA1_c08760 at 904.491 kb on - strand, within PGA1_c08760 at 904.491 kb on - strand, within PGA1_c08760 at 904.516 kb on - strand, within PGA1_c08760 at 904.516 kb on - strand, within PGA1_c08760 at 904.573 kb on + strand, within PGA1_c08760 at 904.585 kb on + strand, within PGA1_c08760 at 904.666 kb on + strand, within PGA1_c08760 at 904.754 kb on + strand, within PGA1_c08760 at 904.794 kb on + strand, within PGA1_c08760 at 904.794 kb on + strand, within PGA1_c08760 at 904.802 kb on - strand, within PGA1_c08760 at 904.954 kb on + strand, within PGA1_c08760 at 904.959 kb on + strand, within PGA1_c08760 at 904.967 kb on - strand, within PGA1_c08760 at 905.080 kb on + strand, within PGA1_c08760 at 905.112 kb on + strand, within PGA1_c08760 at 905.120 kb on + strand, within PGA1_c08760 at 905.121 kb on - strand, within PGA1_c08760 at 905.163 kb on + strand, within PGA1_c08760 at 905.163 kb on + strand, within PGA1_c08760 at 905.163 kb on + strand, within PGA1_c08760 at 905.163 kb on + strand, within PGA1_c08760 at 905.163 kb on + strand, within PGA1_c08760 at 905.163 kb on + strand, within PGA1_c08760 at 905.171 kb on - strand, within PGA1_c08760 at 905.171 kb on - strand, within PGA1_c08760 at 905.171 kb on - strand, within PGA1_c08760 at 905.194 kb on - strand, within PGA1_c08760 at 905.194 kb on - strand, within PGA1_c08760 at 905.244 kb on + strand, within PGA1_c08760 at 905.250 kb on - strand, within PGA1_c08760 at 905.299 kb on + strand, within PGA1_c08760 at 905.318 kb on - strand, within PGA1_c08760 at 905.382 kb on + strand, within PGA1_c08760 at 905.382 kb on + strand, within PGA1_c08760 at 905.382 kb on + strand, within PGA1_c08760 at 905.382 kb on + strand, within PGA1_c08760 at 905.382 kb on + strand, within PGA1_c08760 at 905.382 kb on + strand, within PGA1_c08760 at 905.390 kb on - strand, within PGA1_c08760 at 905.390 kb on - strand, within PGA1_c08760 at 905.448 kb on - strand, within PGA1_c08760 at 905.453 kb on + strand, within PGA1_c08760 at 905.484 kb on + strand, within PGA1_c08760 at 905.507 kb on + strand, within PGA1_c08760 at 905.521 kb on + strand, within PGA1_c08760 at 905.620 kb on - strand, within PGA1_c08760 at 905.631 kb on + strand, within PGA1_c08760 at 905.631 kb on + strand, within PGA1_c08760 at 905.631 kb on + strand, within PGA1_c08760 at 905.631 kb on + strand, within PGA1_c08760 at 905.639 kb on - strand, within PGA1_c08760 at 905.639 kb on - strand, within PGA1_c08760 at 905.711 kb on - strand, within PGA1_c08760 at 905.753 kb on + strand, within PGA1_c08760 at 905.814 kb on + strand, within PGA1_c08760 at 905.821 kb on + strand, within PGA1_c08760 at 905.821 kb on + strand, within PGA1_c08760 at 905.829 kb on - strand, within PGA1_c08760 at 905.843 kb on + strand, within PGA1_c08760 at 905.843 kb on + strand, within PGA1_c08760 at 905.931 kb on - strand, within PGA1_c08760 at 905.953 kb on + strand, within PGA1_c08760 at 905.957 kb on + strand, within PGA1_c08760 at 905.958 kb on + strand, within PGA1_c08760 at 905.961 kb on - strand, within PGA1_c08760 at 906.035 kb on - strand at 906.059 kb on - strand at 906.109 kb on + strand at 906.140 kb on + strand at 906.172 kb on - strand at 906.174 kb on + strand at 906.174 kb on + strand at 906.174 kb on + strand at 906.174 kb on + strand at 906.174 kb on + strand at 906.174 kb on + strand at 906.174 kb on + strand at 906.174 kb on + strand at 906.182 kb on - strand at 906.182 kb on - strand at 906.182 kb on - strand at 906.182 kb on - strand at 906.182 kb on - strand at 906.182 kb on - strand at 906.182 kb on - strand at 906.182 kb on - strand at 906.182 kb on - strand at 906.194 kb on + strand at 906.219 kb on + strand at 906.223 kb on - strand at 906.225 kb on - strand at 906.240 kb on - strand at 906.269 kb on + strand at 906.436 kb on + strand, within PGA1_c08770 at 906.452 kb on + strand, within PGA1_c08770 at 906.522 kb on + strand, within PGA1_c08770 at 906.530 kb on - strand, within PGA1_c08770 at 906.551 kb on + strand, within PGA1_c08770 at 906.555 kb on - strand, within PGA1_c08770 at 906.570 kb on + strand, within PGA1_c08770 at 906.613 kb on + strand, within PGA1_c08770 at 906.623 kb on + strand, within PGA1_c08770 at 906.630 kb on + strand, within PGA1_c08770 at 906.679 kb on + strand, within PGA1_c08770 at 906.688 kb on + strand, within PGA1_c08770 at 906.886 kb on - strand at 906.887 kb on + strand at 906.969 kb on + strand, within PGA1_c08780 at 907.060 kb on + strand, within PGA1_c08780
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Vanillin 1.25 mM remove 902,394 + PGA1_c08750 0.48 +0.9 902,440 - PGA1_c08750 0.52 -1.0 902,456 + PGA1_c08750 0.53 -0.0 902,456 + PGA1_c08750 0.53 +0.1 902,464 - PGA1_c08750 0.54 -0.1 902,464 - PGA1_c08750 0.54 +0.3 902,464 - PGA1_c08750 0.54 +0.8 902,464 - PGA1_c08750 0.54 +0.4 902,464 - PGA1_c08750 0.54 +1.3 902,464 - PGA1_c08750 0.54 +0.2 902,508 - PGA1_c08750 0.57 -0.6 902,525 + PGA1_c08750 0.59 +0.1 902,525 + PGA1_c08750 0.59 -0.4 902,533 - PGA1_c08750 0.59 -0.9 902,540 + PGA1_c08750 0.60 +0.6 902,577 + PGA1_c08750 0.63 -0.0 902,585 - PGA1_c08750 0.64 +0.1 902,645 - PGA1_c08750 0.68 -0.2 902,670 + PGA1_c08750 0.70 -0.4 902,670 + PGA1_c08750 0.70 -0.2 902,704 - PGA1_c08750 0.73 +0.4 902,856 + PGA1_c08750 0.85 +0.5 902,859 - PGA1_c08750 0.85 +0.7 902,909 - PGA1_c08750 0.89 +0.1 902,911 + PGA1_c08750 0.90 +0.3 902,911 + PGA1_c08750 0.90 +1.1 902,943 - -0.9 903,010 + -0.0 903,025 + -0.2 903,039 + +0.7 903,039 + +0.3 903,039 + +0.8 903,073 + +0.4 903,104 + -1.0 903,104 + +0.4 903,112 - -0.4 903,120 - +1.0 903,127 - -0.4 903,141 + +0.1 903,213 + PGA1_c08755 0.35 +0.8 903,213 + PGA1_c08755 0.35 +0.8 903,213 + PGA1_c08755 0.35 +0.8 903,213 + PGA1_c08755 0.35 +0.2 903,213 + PGA1_c08755 0.35 +0.6 903,213 + PGA1_c08755 0.35 -1.8 903,213 + PGA1_c08755 0.35 +1.0 903,213 + PGA1_c08755 0.35 -0.6 903,213 + PGA1_c08755 0.35 -0.5 903,213 + PGA1_c08755 0.35 +1.0 903,221 - PGA1_c08755 0.38 -2.2 903,221 - PGA1_c08755 0.38 -0.4 903,221 - PGA1_c08755 0.38 -0.1 903,221 - PGA1_c08755 0.38 -1.4 903,221 - PGA1_c08755 0.38 +2.1 903,247 + PGA1_c08755 0.48 +1.5 903,301 - PGA1_c08755 0.69 -0.5 903,595 - +1.4 903,619 - +0.6 903,624 + +1.1 903,632 - +1.2 903,697 - PGA1_c08760 0.11 -1.1 903,703 + PGA1_c08760 0.11 +0.3 903,754 + PGA1_c08760 0.13 +0.2 903,762 - PGA1_c08760 0.13 -0.6 903,762 - PGA1_c08760 0.13 -2.0 903,764 + PGA1_c08760 0.13 +0.3 903,772 - PGA1_c08760 0.13 +0.4 903,873 - PGA1_c08760 0.17 -1.8 903,873 - PGA1_c08760 0.17 -0.5 903,920 - PGA1_c08760 0.18 -0.5 903,952 + PGA1_c08760 0.20 +0.6 903,957 - PGA1_c08760 0.20 -0.4 904,000 + PGA1_c08760 0.21 -2.0 904,040 - PGA1_c08760 0.23 +0.1 904,057 + PGA1_c08760 0.23 -1.1 904,057 + PGA1_c08760 0.23 -0.4 904,057 + PGA1_c08760 0.23 +1.1 904,057 + PGA1_c08760 0.23 -3.1 904,065 - PGA1_c08760 0.23 -0.7 904,098 - PGA1_c08760 0.25 +0.3 904,189 - PGA1_c08760 0.28 +0.4 904,226 + PGA1_c08760 0.29 +0.9 904,274 + PGA1_c08760 0.31 +0.7 904,278 + PGA1_c08760 0.31 +0.1 904,278 + PGA1_c08760 0.31 +0.4 904,278 + PGA1_c08760 0.31 +0.8 904,278 + PGA1_c08760 0.31 +0.9 904,286 - PGA1_c08760 0.31 +1.1 904,286 - PGA1_c08760 0.31 +0.3 904,339 - PGA1_c08760 0.33 -0.7 904,341 - PGA1_c08760 0.33 -0.5 904,396 - PGA1_c08760 0.35 +0.3 904,404 - PGA1_c08760 0.35 -0.3 904,421 - PGA1_c08760 0.36 -0.0 904,435 + PGA1_c08760 0.36 +1.1 904,440 + PGA1_c08760 0.36 +0.6 904,445 - PGA1_c08760 0.36 +1.4 904,458 + PGA1_c08760 0.37 -1.2 904,466 - PGA1_c08760 0.37 +1.1 904,468 + PGA1_c08760 0.37 +0.7 904,476 - PGA1_c08760 0.37 -1.0 904,476 - PGA1_c08760 0.37 -1.1 904,486 - PGA1_c08760 0.38 +0.6 904,491 - PGA1_c08760 0.38 -0.0 904,491 - PGA1_c08760 0.38 +1.0 904,516 - PGA1_c08760 0.39 +0.0 904,516 - PGA1_c08760 0.39 -0.9 904,573 + PGA1_c08760 0.41 +0.0 904,585 + PGA1_c08760 0.41 +0.9 904,666 + PGA1_c08760 0.44 +0.6 904,754 + PGA1_c08760 0.47 -0.3 904,794 + PGA1_c08760 0.48 +0.6 904,794 + PGA1_c08760 0.48 -0.3 904,802 - PGA1_c08760 0.49 +0.1 904,954 + PGA1_c08760 0.54 -0.2 904,959 + PGA1_c08760 0.54 -0.2 904,967 - PGA1_c08760 0.54 +1.2 905,080 + PGA1_c08760 0.58 +1.3 905,112 + PGA1_c08760 0.59 +0.5 905,120 + PGA1_c08760 0.59 -3.3 905,121 - PGA1_c08760 0.60 -0.8 905,163 + PGA1_c08760 0.61 -0.5 905,163 + PGA1_c08760 0.61 +0.9 905,163 + PGA1_c08760 0.61 +0.1 905,163 + PGA1_c08760 0.61 +1.9 905,163 + PGA1_c08760 0.61 -0.2 905,163 + PGA1_c08760 0.61 +0.1 905,171 - PGA1_c08760 0.61 +0.6 905,171 - PGA1_c08760 0.61 +0.3 905,171 - PGA1_c08760 0.61 +0.7 905,194 - PGA1_c08760 0.62 +0.4 905,194 - PGA1_c08760 0.62 -0.3 905,244 + PGA1_c08760 0.64 -0.2 905,250 - PGA1_c08760 0.64 -0.6 905,299 + PGA1_c08760 0.66 +1.9 905,318 - PGA1_c08760 0.66 -0.3 905,382 + PGA1_c08760 0.68 +0.6 905,382 + PGA1_c08760 0.68 +0.9 905,382 + PGA1_c08760 0.68 -0.9 905,382 + PGA1_c08760 0.68 +0.5 905,382 + PGA1_c08760 0.68 +0.3 905,382 + PGA1_c08760 0.68 +0.4 905,390 - PGA1_c08760 0.69 +0.7 905,390 - PGA1_c08760 0.69 -2.0 905,448 - PGA1_c08760 0.71 +0.3 905,453 + PGA1_c08760 0.71 +3.5 905,484 + PGA1_c08760 0.72 -0.8 905,507 + PGA1_c08760 0.73 -0.2 905,521 + PGA1_c08760 0.73 +1.4 905,620 - PGA1_c08760 0.77 +1.4 905,631 + PGA1_c08760 0.77 -0.4 905,631 + PGA1_c08760 0.77 +0.5 905,631 + PGA1_c08760 0.77 +1.0 905,631 + PGA1_c08760 0.77 +1.0 905,639 - PGA1_c08760 0.77 +0.7 905,639 - PGA1_c08760 0.77 -0.6 905,711 - PGA1_c08760 0.80 +0.9 905,753 + PGA1_c08760 0.81 +0.1 905,814 + PGA1_c08760 0.83 +2.0 905,821 + PGA1_c08760 0.83 +0.2 905,821 + PGA1_c08760 0.83 -1.1 905,829 - PGA1_c08760 0.84 -1.5 905,843 + PGA1_c08760 0.84 +0.3 905,843 + PGA1_c08760 0.84 +1.2 905,931 - PGA1_c08760 0.87 +0.7 905,953 + PGA1_c08760 0.88 -1.1 905,957 + PGA1_c08760 0.88 -0.7 905,958 + PGA1_c08760 0.88 -0.2 905,961 - PGA1_c08760 0.88 +0.1 906,035 - +2.5 906,059 - +2.1 906,109 + -0.1 906,140 + -0.3 906,172 - +1.4 906,174 + +0.1 906,174 + +1.0 906,174 + -0.7 906,174 + +0.0 906,174 + +0.2 906,174 + -2.3 906,174 + +0.6 906,174 + -0.3 906,182 - +0.1 906,182 - +1.7 906,182 - +0.8 906,182 - +0.8 906,182 - -0.9 906,182 - -1.4 906,182 - +1.0 906,182 - +0.5 906,182 - -1.8 906,194 + +2.7 906,219 + +1.6 906,223 - -0.8 906,225 - +0.1 906,240 - -0.0 906,269 + +0.1 906,436 + PGA1_c08770 0.26 +0.5 906,452 + PGA1_c08770 0.29 -0.3 906,522 + PGA1_c08770 0.41 +0.7 906,530 - PGA1_c08770 0.43 +0.9 906,551 + PGA1_c08770 0.47 +0.3 906,555 - PGA1_c08770 0.47 -0.5 906,570 + PGA1_c08770 0.50 +0.3 906,613 + PGA1_c08770 0.58 +0.4 906,623 + PGA1_c08770 0.60 +0.5 906,630 + PGA1_c08770 0.61 +0.8 906,679 + PGA1_c08770 0.70 +1.2 906,688 + PGA1_c08770 0.72 -0.4 906,886 - -0.7 906,887 + -2.8 906,969 + PGA1_c08780 0.26 +1.1 907,060 + PGA1_c08780 0.53 +0.7
Or see this region's nucleotide sequence