Experiment: m.b. D-Cycloserine 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_811 and HP15_812 are separated by 44 nucleotides HP15_812 and HP15_813 are separated by 74 nucleotides HP15_813 and HP15_814 are separated by 29 nucleotides
HP15_811: HP15_811 - acetyl-CoA synthetase, at 829,378 to 831,327
_811
HP15_812: HP15_812 - two component transcriptional regulator, LuxR family, at 831,372 to 832,037
_812
HP15_813: HP15_813 - D-isomer specific 2-hydroxyacid dehydrogenase family protein, at 832,112 to 833,281
_813
HP15_814: HP15_814 - aspartate aminotransferase, at 833,311 to 834,561
_814
Position (kb) 832
833
834 Strain fitness (log2 ratio) -2
-1
0
1
2 at 832.138 kb on - strand at 832.450 kb on + strand, within HP15_813 at 832.457 kb on + strand, within HP15_813 at 832.555 kb on + strand, within HP15_813 at 832.829 kb on - strand, within HP15_813 at 832.829 kb on - strand, within HP15_813 at 832.841 kb on + strand, within HP15_813 at 832.849 kb on - strand, within HP15_813 at 832.953 kb on + strand, within HP15_813 at 832.975 kb on + strand, within HP15_813 at 832.975 kb on + strand, within HP15_813 at 833.084 kb on - strand, within HP15_813 at 833.150 kb on + strand, within HP15_813 at 833.150 kb on + strand, within HP15_813 at 833.164 kb on + strand, within HP15_813 at 833.267 kb on + strand at 833.283 kb on - strand at 833.293 kb on - strand at 833.316 kb on - strand at 833.339 kb on - strand at 833.391 kb on - strand at 833.645 kb on + strand, within HP15_814 at 833.669 kb on - strand, within HP15_814 at 833.769 kb on - strand, within HP15_814 at 833.784 kb on - strand, within HP15_814 at 833.820 kb on - strand, within HP15_814 at 833.882 kb on - strand, within HP15_814 at 833.934 kb on - strand, within HP15_814 at 833.993 kb on + strand, within HP15_814 at 834.009 kb on - strand, within HP15_814 at 834.043 kb on + strand, within HP15_814 at 834.229 kb on + strand, within HP15_814
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.064 mg/ml remove 832,138 - +2.0 832,450 + HP15_813 0.29 -0.7 832,457 + HP15_813 0.29 -0.9 832,555 + HP15_813 0.38 -0.6 832,829 - HP15_813 0.61 -2.1 832,829 - HP15_813 0.61 -1.4 832,841 + HP15_813 0.62 -0.4 832,849 - HP15_813 0.63 -0.1 832,953 + HP15_813 0.72 +0.8 832,975 + HP15_813 0.74 -0.4 832,975 + HP15_813 0.74 -0.8 833,084 - HP15_813 0.83 +0.8 833,150 + HP15_813 0.89 -0.0 833,150 + HP15_813 0.89 -0.9 833,164 + HP15_813 0.90 -0.4 833,267 + -1.2 833,283 - +0.8 833,293 - -0.7 833,316 - +0.2 833,339 - +0.4 833,391 - +0.7 833,645 + HP15_814 0.27 -0.2 833,669 - HP15_814 0.29 -0.3 833,769 - HP15_814 0.37 +0.2 833,784 - HP15_814 0.38 -0.0 833,820 - HP15_814 0.41 +0.4 833,882 - HP15_814 0.46 -1.7 833,934 - HP15_814 0.50 +1.0 833,993 + HP15_814 0.55 +0.2 834,009 - HP15_814 0.56 +2.6 834,043 + HP15_814 0.59 +0.6 834,229 + HP15_814 0.73 +1.1
Or see this region's nucleotide sequence