Experiment: m.b. Vanillin 1.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c06720 and PGA1_c06730 are separated by 406 nucleotides PGA1_c06730 and PGA1_c06740 are separated by 32 nucleotides PGA1_c06740 and PGA1_c06750 are separated by 123 nucleotides
PGA1_c06720: PGA1_c06720 - Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases, at 690,052 to 690,477
_c06720
PGA1_c06730: PGA1_c06730 - Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily), at 690,884 to 692,806
_c06730
PGA1_c06740: PGA1_c06740 - octanoyltransferase LipB, at 692,839 to 693,510
_c06740
PGA1_c06750: PGA1_c06750 - Putative peptidoglycan binding domain., at 693,634 to 695,295
_c06750
Position (kb) 690
691
692
693 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 689.892 kb on + strand at 689.900 kb on - strand at 690.033 kb on + strand at 690.041 kb on - strand at 690.041 kb on - strand at 690.110 kb on - strand, within PGA1_c06720 at 690.118 kb on + strand, within PGA1_c06720 at 690.118 kb on + strand, within PGA1_c06720 at 690.126 kb on - strand, within PGA1_c06720 at 690.126 kb on - strand, within PGA1_c06720 at 690.126 kb on - strand, within PGA1_c06720 at 690.126 kb on - strand, within PGA1_c06720 at 690.133 kb on - strand, within PGA1_c06720 at 690.136 kb on + strand, within PGA1_c06720 at 690.138 kb on - strand, within PGA1_c06720 at 690.144 kb on - strand, within PGA1_c06720 at 690.173 kb on + strand, within PGA1_c06720 at 690.173 kb on + strand, within PGA1_c06720 at 690.173 kb on + strand, within PGA1_c06720 at 690.226 kb on + strand, within PGA1_c06720 at 690.252 kb on - strand, within PGA1_c06720 at 690.264 kb on - strand, within PGA1_c06720 at 690.272 kb on + strand, within PGA1_c06720 at 690.300 kb on + strand, within PGA1_c06720 at 690.327 kb on + strand, within PGA1_c06720 at 690.327 kb on + strand, within PGA1_c06720 at 690.335 kb on - strand, within PGA1_c06720 at 690.335 kb on - strand, within PGA1_c06720 at 690.464 kb on - strand at 690.476 kb on + strand at 690.493 kb on + strand at 690.493 kb on + strand at 690.602 kb on - strand at 690.655 kb on + strand at 690.663 kb on - strand at 690.756 kb on + strand at 690.769 kb on - strand at 690.788 kb on + strand at 690.806 kb on - strand at 690.826 kb on - strand at 690.869 kb on - strand at 690.876 kb on + strand at 690.886 kb on + strand at 690.894 kb on - strand at 690.901 kb on + strand at 690.909 kb on - strand at 690.933 kb on + strand at 690.993 kb on - strand at 691.063 kb on - strand at 691.093 kb on + strand, within PGA1_c06730 at 691.111 kb on - strand, within PGA1_c06730 at 691.138 kb on - strand, within PGA1_c06730 at 691.164 kb on - strand, within PGA1_c06730 at 691.175 kb on + strand, within PGA1_c06730 at 691.175 kb on + strand, within PGA1_c06730 at 691.175 kb on + strand, within PGA1_c06730 at 691.175 kb on + strand, within PGA1_c06730 at 691.183 kb on - strand, within PGA1_c06730 at 691.300 kb on + strand, within PGA1_c06730 at 691.331 kb on + strand, within PGA1_c06730 at 691.390 kb on + strand, within PGA1_c06730 at 691.390 kb on + strand, within PGA1_c06730 at 691.398 kb on - strand, within PGA1_c06730 at 691.398 kb on - strand, within PGA1_c06730 at 691.455 kb on - strand, within PGA1_c06730 at 691.462 kb on + strand, within PGA1_c06730 at 691.472 kb on + strand, within PGA1_c06730 at 691.472 kb on + strand, within PGA1_c06730 at 691.472 kb on + strand, within PGA1_c06730 at 691.472 kb on + strand, within PGA1_c06730 at 691.480 kb on - strand, within PGA1_c06730 at 691.480 kb on - strand, within PGA1_c06730 at 691.502 kb on + strand, within PGA1_c06730 at 691.562 kb on + strand, within PGA1_c06730 at 691.562 kb on + strand, within PGA1_c06730 at 691.562 kb on + strand, within PGA1_c06730 at 691.570 kb on - strand, within PGA1_c06730 at 691.584 kb on - strand, within PGA1_c06730 at 691.610 kb on - strand, within PGA1_c06730 at 691.648 kb on - strand, within PGA1_c06730 at 691.649 kb on + strand, within PGA1_c06730 at 691.727 kb on + strand, within PGA1_c06730 at 691.735 kb on - strand, within PGA1_c06730 at 691.769 kb on + strand, within PGA1_c06730 at 691.782 kb on + strand, within PGA1_c06730 at 691.796 kb on + strand, within PGA1_c06730 at 691.804 kb on - strand, within PGA1_c06730 at 691.827 kb on - strand, within PGA1_c06730 at 691.879 kb on - strand, within PGA1_c06730 at 691.886 kb on + strand, within PGA1_c06730 at 691.888 kb on - strand, within PGA1_c06730 at 692.033 kb on + strand, within PGA1_c06730 at 692.040 kb on - strand, within PGA1_c06730 at 692.041 kb on - strand, within PGA1_c06730 at 692.067 kb on + strand, within PGA1_c06730 at 692.166 kb on - strand, within PGA1_c06730 at 692.191 kb on - strand, within PGA1_c06730 at 692.192 kb on - strand, within PGA1_c06730 at 692.302 kb on + strand, within PGA1_c06730 at 692.307 kb on + strand, within PGA1_c06730 at 692.307 kb on + strand, within PGA1_c06730 at 692.307 kb on + strand, within PGA1_c06730 at 692.307 kb on + strand, within PGA1_c06730 at 692.312 kb on + strand, within PGA1_c06730 at 692.315 kb on - strand, within PGA1_c06730 at 692.315 kb on - strand, within PGA1_c06730 at 692.315 kb on - strand, within PGA1_c06730 at 692.315 kb on - strand, within PGA1_c06730 at 692.315 kb on - strand, within PGA1_c06730 at 692.317 kb on + strand, within PGA1_c06730 at 692.320 kb on - strand, within PGA1_c06730 at 692.363 kb on + strand, within PGA1_c06730 at 692.363 kb on + strand, within PGA1_c06730 at 692.371 kb on - strand, within PGA1_c06730 at 692.371 kb on - strand, within PGA1_c06730 at 692.371 kb on - strand, within PGA1_c06730 at 692.371 kb on - strand, within PGA1_c06730 at 692.378 kb on + strand, within PGA1_c06730 at 692.378 kb on + strand, within PGA1_c06730 at 692.426 kb on + strand, within PGA1_c06730 at 692.435 kb on - strand, within PGA1_c06730 at 692.572 kb on - strand, within PGA1_c06730 at 692.622 kb on + strand at 692.622 kb on + strand at 692.622 kb on + strand at 692.630 kb on - strand at 692.630 kb on - strand at 692.630 kb on - strand at 692.632 kb on + strand at 692.655 kb on + strand at 692.660 kb on + strand at 692.663 kb on - strand at 692.663 kb on - strand at 692.665 kb on - strand at 692.694 kb on + strand at 692.725 kb on + strand at 692.738 kb on - strand at 692.740 kb on + strand at 692.806 kb on + strand at 692.806 kb on + strand at 692.806 kb on + strand at 692.836 kb on + strand at 692.844 kb on - strand at 692.857 kb on - strand at 692.862 kb on - strand at 693.539 kb on + strand at 693.544 kb on + strand at 693.544 kb on + strand at 693.544 kb on + strand at 693.544 kb on + strand at 693.552 kb on - strand at 693.552 kb on - strand at 693.552 kb on - strand at 693.594 kb on + strand at 693.673 kb on + strand at 693.676 kb on - strand at 693.676 kb on - strand at 693.676 kb on - strand at 693.681 kb on - strand at 693.683 kb on + strand at 693.683 kb on + strand at 693.714 kb on + strand at 693.714 kb on + strand at 693.749 kb on + strand at 693.757 kb on - strand at 693.769 kb on + strand at 693.777 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Vanillin 1.25 mM remove 689,892 + +0.4 689,900 - +1.7 690,033 + -1.7 690,041 - +0.7 690,041 - -1.6 690,110 - PGA1_c06720 0.14 +0.0 690,118 + PGA1_c06720 0.15 +0.0 690,118 + PGA1_c06720 0.15 -1.0 690,126 - PGA1_c06720 0.17 -0.3 690,126 - PGA1_c06720 0.17 +0.7 690,126 - PGA1_c06720 0.17 +0.3 690,126 - PGA1_c06720 0.17 -2.0 690,133 - PGA1_c06720 0.19 +0.3 690,136 + PGA1_c06720 0.20 +1.1 690,138 - PGA1_c06720 0.20 -0.6 690,144 - PGA1_c06720 0.22 -1.1 690,173 + PGA1_c06720 0.28 +2.3 690,173 + PGA1_c06720 0.28 -0.1 690,173 + PGA1_c06720 0.28 -0.6 690,226 + PGA1_c06720 0.41 +0.7 690,252 - PGA1_c06720 0.47 -1.6 690,264 - PGA1_c06720 0.50 -0.4 690,272 + PGA1_c06720 0.52 +0.6 690,300 + PGA1_c06720 0.58 -1.8 690,327 + PGA1_c06720 0.65 +0.8 690,327 + PGA1_c06720 0.65 -1.5 690,335 - PGA1_c06720 0.66 -0.7 690,335 - PGA1_c06720 0.66 +2.4 690,464 - +0.3 690,476 + -2.0 690,493 + -1.1 690,493 + -0.2 690,602 - +0.8 690,655 + -0.3 690,663 - -0.9 690,756 + +0.1 690,769 - +0.5 690,788 + -0.6 690,806 - +0.3 690,826 - -1.3 690,869 - -1.2 690,876 + -1.1 690,886 + -0.5 690,894 - -1.0 690,901 + -1.9 690,909 - +1.6 690,933 + -0.1 690,993 - -2.2 691,063 - +0.6 691,093 + PGA1_c06730 0.11 +0.6 691,111 - PGA1_c06730 0.12 +3.2 691,138 - PGA1_c06730 0.13 +0.3 691,164 - PGA1_c06730 0.15 -0.5 691,175 + PGA1_c06730 0.15 -0.2 691,175 + PGA1_c06730 0.15 -1.0 691,175 + PGA1_c06730 0.15 -2.5 691,175 + PGA1_c06730 0.15 +0.5 691,183 - PGA1_c06730 0.16 +0.4 691,300 + PGA1_c06730 0.22 -1.5 691,331 + PGA1_c06730 0.23 -1.6 691,390 + PGA1_c06730 0.26 -0.6 691,390 + PGA1_c06730 0.26 +0.7 691,398 - PGA1_c06730 0.27 -0.9 691,398 - PGA1_c06730 0.27 +0.3 691,455 - PGA1_c06730 0.30 -0.4 691,462 + PGA1_c06730 0.30 +1.6 691,472 + PGA1_c06730 0.31 +0.1 691,472 + PGA1_c06730 0.31 -0.3 691,472 + PGA1_c06730 0.31 -0.2 691,472 + PGA1_c06730 0.31 -0.8 691,480 - PGA1_c06730 0.31 +1.0 691,480 - PGA1_c06730 0.31 +0.8 691,502 + PGA1_c06730 0.32 -1.8 691,562 + PGA1_c06730 0.35 +2.0 691,562 + PGA1_c06730 0.35 -0.9 691,562 + PGA1_c06730 0.35 -1.3 691,570 - PGA1_c06730 0.36 -0.2 691,584 - PGA1_c06730 0.36 +0.8 691,610 - PGA1_c06730 0.38 +1.0 691,648 - PGA1_c06730 0.40 +0.3 691,649 + PGA1_c06730 0.40 +0.3 691,727 + PGA1_c06730 0.44 -0.3 691,735 - PGA1_c06730 0.44 +0.0 691,769 + PGA1_c06730 0.46 +0.7 691,782 + PGA1_c06730 0.47 +0.0 691,796 + PGA1_c06730 0.47 -2.1 691,804 - PGA1_c06730 0.48 -0.3 691,827 - PGA1_c06730 0.49 +0.8 691,879 - PGA1_c06730 0.52 +0.3 691,886 + PGA1_c06730 0.52 -0.8 691,888 - PGA1_c06730 0.52 +0.6 692,033 + PGA1_c06730 0.60 -0.5 692,040 - PGA1_c06730 0.60 -1.6 692,041 - PGA1_c06730 0.60 -0.1 692,067 + PGA1_c06730 0.62 +0.5 692,166 - PGA1_c06730 0.67 -2.2 692,191 - PGA1_c06730 0.68 -0.2 692,192 - PGA1_c06730 0.68 +0.0 692,302 + PGA1_c06730 0.74 -0.6 692,307 + PGA1_c06730 0.74 -0.4 692,307 + PGA1_c06730 0.74 +0.5 692,307 + PGA1_c06730 0.74 +0.6 692,307 + PGA1_c06730 0.74 +0.3 692,312 + PGA1_c06730 0.74 -0.9 692,315 - PGA1_c06730 0.74 -0.9 692,315 - PGA1_c06730 0.74 -0.3 692,315 - PGA1_c06730 0.74 -1.3 692,315 - PGA1_c06730 0.74 -0.6 692,315 - PGA1_c06730 0.74 +0.5 692,317 + PGA1_c06730 0.75 -0.3 692,320 - PGA1_c06730 0.75 +0.5 692,363 + PGA1_c06730 0.77 +1.3 692,363 + PGA1_c06730 0.77 -2.7 692,371 - PGA1_c06730 0.77 +0.0 692,371 - PGA1_c06730 0.77 +0.5 692,371 - PGA1_c06730 0.77 -1.2 692,371 - PGA1_c06730 0.77 +0.5 692,378 + PGA1_c06730 0.78 -1.6 692,378 + PGA1_c06730 0.78 -1.0 692,426 + PGA1_c06730 0.80 +0.0 692,435 - PGA1_c06730 0.81 -0.8 692,572 - PGA1_c06730 0.88 -2.2 692,622 + -0.6 692,622 + -0.8 692,622 + +1.4 692,630 - +0.0 692,630 - -1.3 692,630 - -1.2 692,632 + +1.0 692,655 + -3.7 692,660 + -0.7 692,663 - -1.0 692,663 - -1.8 692,665 - -0.2 692,694 + +0.8 692,725 + +0.0 692,738 - -0.8 692,740 + -1.6 692,806 + -2.3 692,806 + -2.8 692,806 + -0.3 692,836 + +0.0 692,844 - -0.2 692,857 - +0.8 692,862 - +0.0 693,539 + -1.0 693,544 + -0.6 693,544 + -0.6 693,544 + +0.1 693,544 + +0.4 693,552 - +0.0 693,552 - -0.0 693,552 - -0.2 693,594 + -2.2 693,673 + -0.1 693,676 - +0.6 693,676 - -0.6 693,676 - -1.0 693,681 - -1.5 693,683 + -1.2 693,683 + -1.6 693,714 + -1.6 693,714 + -2.4 693,749 + -2.0 693,757 - -0.5 693,769 + +0.4 693,777 - -0.3
Or see this region's nucleotide sequence