Strain Fitness in Marinobacter adhaerens HP15 around HP15_4136

Experiment: m.b. D-Cycloserine 0.064 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_4134 and HP15_4135 overlap by 4 nucleotidesHP15_4135 and HP15_4136 are separated by 88 nucleotidesHP15_4136 and HP15_4137 are separated by 38 nucleotides HP15_4134: HP15_4134 - ABC-type polar amino acid transport system, ATPase component, at 4,368,033 to 4,368,776 _4134 HP15_4135: HP15_4135 - binding-protein-dependent transport systems inner membrane component, at 4,368,773 to 4,369,471 _4135 HP15_4136: HP15_4136 - periplasmic molybdate-binding protein/domain protein, at 4,369,560 to 4,370,474 _4136 HP15_4137: HP15_4137 - sulphate transporter-like protein, at 4,370,513 to 4,371,643 _4137 Position (kb) 4369 4370 4371Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 4368.621 kb on - strand, within HP15_4134at 4368.691 kb on + strand, within HP15_4134at 4368.699 kb on - strand, within HP15_4134at 4368.750 kb on + strandat 4368.828 kb on + strandat 4368.862 kb on - strand, within HP15_4135at 4368.872 kb on + strand, within HP15_4135at 4368.912 kb on + strand, within HP15_4135at 4368.920 kb on - strand, within HP15_4135at 4368.922 kb on + strand, within HP15_4135at 4368.930 kb on - strand, within HP15_4135at 4368.991 kb on - strand, within HP15_4135at 4369.002 kb on + strand, within HP15_4135at 4369.010 kb on - strand, within HP15_4135at 4369.017 kb on - strand, within HP15_4135at 4369.026 kb on + strand, within HP15_4135at 4369.026 kb on + strand, within HP15_4135at 4369.034 kb on - strand, within HP15_4135at 4369.034 kb on - strand, within HP15_4135at 4369.149 kb on + strand, within HP15_4135at 4369.185 kb on + strand, within HP15_4135at 4369.239 kb on - strand, within HP15_4135at 4369.271 kb on - strand, within HP15_4135at 4369.341 kb on + strand, within HP15_4135at 4369.346 kb on + strand, within HP15_4135at 4369.349 kb on - strand, within HP15_4135at 4369.369 kb on - strand, within HP15_4135at 4369.369 kb on - strand, within HP15_4135at 4369.404 kb on + strandat 4369.412 kb on - strandat 4369.412 kb on - strandat 4369.489 kb on - strandat 4369.490 kb on - strandat 4369.495 kb on - strandat 4369.663 kb on - strand, within HP15_4136at 4369.664 kb on - strand, within HP15_4136at 4369.678 kb on + strand, within HP15_4136at 4369.680 kb on + strand, within HP15_4136at 4369.686 kb on - strand, within HP15_4136at 4369.716 kb on - strand, within HP15_4136at 4369.753 kb on + strand, within HP15_4136at 4369.775 kb on - strand, within HP15_4136at 4369.828 kb on - strand, within HP15_4136at 4369.846 kb on + strand, within HP15_4136at 4369.879 kb on + strand, within HP15_4136at 4369.927 kb on - strand, within HP15_4136at 4369.971 kb on + strand, within HP15_4136at 4370.039 kb on - strand, within HP15_4136at 4370.078 kb on - strand, within HP15_4136at 4370.081 kb on - strand, within HP15_4136at 4370.186 kb on + strand, within HP15_4136at 4370.194 kb on - strand, within HP15_4136at 4370.194 kb on - strand, within HP15_4136at 4370.300 kb on - strand, within HP15_4136at 4370.307 kb on - strand, within HP15_4136at 4370.455 kb on - strandat 4370.465 kb on - strandat 4370.506 kb on + strandat 4370.511 kb on + strandat 4370.566 kb on + strandat 4370.597 kb on - strandat 4370.650 kb on + strand, within HP15_4137at 4370.658 kb on - strand, within HP15_4137at 4370.671 kb on + strand, within HP15_4137at 4370.684 kb on - strand, within HP15_4137at 4370.707 kb on + strand, within HP15_4137at 4370.740 kb on - strand, within HP15_4137at 4370.740 kb on - strand, within HP15_4137at 4370.768 kb on + strand, within HP15_4137at 4370.768 kb on + strand, within HP15_4137at 4370.776 kb on - strand, within HP15_4137at 4370.846 kb on + strand, within HP15_4137

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.064 mg/ml
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4,368,621 - HP15_4134 0.79 +1.6
4,368,691 + HP15_4134 0.88 -0.4
4,368,699 - HP15_4134 0.90 +1.9
4,368,750 + +0.9
4,368,828 + +0.6
4,368,862 - HP15_4135 0.13 -0.1
4,368,872 + HP15_4135 0.14 +0.2
4,368,912 + HP15_4135 0.20 +1.0
4,368,920 - HP15_4135 0.21 +1.7
4,368,922 + HP15_4135 0.21 +1.2
4,368,930 - HP15_4135 0.22 +3.5
4,368,991 - HP15_4135 0.31 +1.3
4,369,002 + HP15_4135 0.33 +0.9
4,369,010 - HP15_4135 0.34 +1.0
4,369,017 - HP15_4135 0.35 +0.9
4,369,026 + HP15_4135 0.36 -0.6
4,369,026 + HP15_4135 0.36 +0.9
4,369,034 - HP15_4135 0.37 +2.3
4,369,034 - HP15_4135 0.37 +0.9
4,369,149 + HP15_4135 0.54 +2.2
4,369,185 + HP15_4135 0.59 -0.2
4,369,239 - HP15_4135 0.67 +0.8
4,369,271 - HP15_4135 0.71 -0.4
4,369,341 + HP15_4135 0.81 +0.5
4,369,346 + HP15_4135 0.82 +0.9
4,369,349 - HP15_4135 0.82 +1.0
4,369,369 - HP15_4135 0.85 -0.4
4,369,369 - HP15_4135 0.85 +0.6
4,369,404 + +0.2
4,369,412 - +0.2
4,369,412 - +1.2
4,369,489 - +0.1
4,369,490 - +0.4
4,369,495 - +0.1
4,369,663 - HP15_4136 0.11 -0.6
4,369,664 - HP15_4136 0.11 +0.1
4,369,678 + HP15_4136 0.13 +1.3
4,369,680 + HP15_4136 0.13 -0.1
4,369,686 - HP15_4136 0.14 -0.5
4,369,716 - HP15_4136 0.17 -0.1
4,369,753 + HP15_4136 0.21 +0.7
4,369,775 - HP15_4136 0.23 +1.3
4,369,828 - HP15_4136 0.29 -0.4
4,369,846 + HP15_4136 0.31 +0.9
4,369,879 + HP15_4136 0.35 +1.6
4,369,927 - HP15_4136 0.40 +0.4
4,369,971 + HP15_4136 0.45 +4.2
4,370,039 - HP15_4136 0.52 +2.7
4,370,078 - HP15_4136 0.57 +1.1
4,370,081 - HP15_4136 0.57 -0.6
4,370,186 + HP15_4136 0.68 -0.0
4,370,194 - HP15_4136 0.69 +1.0
4,370,194 - HP15_4136 0.69 +0.6
4,370,300 - HP15_4136 0.81 +1.1
4,370,307 - HP15_4136 0.82 +2.8
4,370,455 - -4.0
4,370,465 - +0.1
4,370,506 + -0.8
4,370,511 + +0.3
4,370,566 + +0.1
4,370,597 - +1.1
4,370,650 + HP15_4137 0.12 -1.4
4,370,658 - HP15_4137 0.13 +0.6
4,370,671 + HP15_4137 0.14 -0.8
4,370,684 - HP15_4137 0.15 +0.8
4,370,707 + HP15_4137 0.17 -0.2
4,370,740 - HP15_4137 0.20 +0.4
4,370,740 - HP15_4137 0.20 +0.3
4,370,768 + HP15_4137 0.23 +0.7
4,370,768 + HP15_4137 0.23 +1.0
4,370,776 - HP15_4137 0.23 +0.7
4,370,846 + HP15_4137 0.29 +0.9

Or see this region's nucleotide sequence