Strain Fitness in Marinobacter adhaerens HP15 around HP15_3858

Experiment: m.b. D-Cycloserine 0.064 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3857 and HP15_3858 are separated by 33 nucleotidesHP15_3858 and HP15_3859 overlap by 4 nucleotidesHP15_3859 and HP15_3860 are separated by 57 nucleotidesHP15_3860 and HP15_3861 are separated by 33 nucleotides HP15_3857: HP15_3857 - RNA polymerase, sigma 70 subunit, RpoD family, at 4,083,909 to 4,084,907 _3857 HP15_3858: HP15_3858 - aspartate kinase, at 4,084,941 to 4,085,399 _3858 HP15_3859: HP15_3859 - conserved hypothetical protein, at 4,085,396 to 4,085,701 _3859 HP15_3860: HP15_3860 - DNA-3-methyladenine glycosylase I, at 4,085,759 to 4,086,340 _3860 HP15_3861: HP15_3861 - 4'-phosphopantetheinyl transferase, at 4,086,374 to 4,086,928 _3861 Position (kb) 4084 4085 4086Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 4083.958 kb on + strandat 4083.985 kb on + strandat 4084.075 kb on + strand, within HP15_3857at 4084.104 kb on + strand, within HP15_3857at 4084.276 kb on - strand, within HP15_3857at 4084.307 kb on + strand, within HP15_3857at 4084.386 kb on + strand, within HP15_3857at 4084.460 kb on + strand, within HP15_3857at 4084.482 kb on + strand, within HP15_3857at 4084.489 kb on + strand, within HP15_3857at 4084.515 kb on + strand, within HP15_3857at 4084.543 kb on + strand, within HP15_3857at 4084.636 kb on + strand, within HP15_3857at 4084.676 kb on + strand, within HP15_3857at 4084.699 kb on + strand, within HP15_3857at 4084.699 kb on + strand, within HP15_3857at 4084.770 kb on - strand, within HP15_3857at 4084.770 kb on - strand, within HP15_3857at 4084.959 kb on - strandat 4084.959 kb on - strandat 4085.007 kb on + strand, within HP15_3858at 4085.008 kb on - strand, within HP15_3858at 4085.083 kb on - strand, within HP15_3858at 4085.103 kb on - strand, within HP15_3858at 4085.206 kb on + strand, within HP15_3858at 4085.274 kb on - strand, within HP15_3858at 4085.304 kb on + strand, within HP15_3858at 4085.312 kb on - strand, within HP15_3858at 4085.357 kb on - strandat 4085.438 kb on - strand, within HP15_3859at 4085.439 kb on - strand, within HP15_3859at 4085.472 kb on + strand, within HP15_3859at 4085.520 kb on - strand, within HP15_3859at 4085.621 kb on - strand, within HP15_3859at 4085.674 kb on - strandat 4085.683 kb on + strandat 4085.701 kb on + strandat 4085.711 kb on - strandat 4085.734 kb on - strandat 4085.734 kb on - strandat 4085.794 kb on - strandat 4085.841 kb on - strand, within HP15_3860at 4085.890 kb on - strand, within HP15_3860at 4085.890 kb on - strand, within HP15_3860at 4086.019 kb on + strand, within HP15_3860at 4086.019 kb on + strand, within HP15_3860at 4086.066 kb on - strand, within HP15_3860at 4086.089 kb on + strand, within HP15_3860at 4086.250 kb on - strand, within HP15_3860at 4086.266 kb on + strand, within HP15_3860at 4086.266 kb on + strand, within HP15_3860at 4086.274 kb on - strand, within HP15_3860at 4086.306 kb on + strandat 4086.332 kb on - strandat 4086.345 kb on - strandat 4086.356 kb on - strandat 4086.366 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.064 mg/ml
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4,083,958 + +0.9
4,083,985 + -0.5
4,084,075 + HP15_3857 0.17 -0.6
4,084,104 + HP15_3857 0.20 +1.7
4,084,276 - HP15_3857 0.37 -0.8
4,084,307 + HP15_3857 0.40 +0.1
4,084,386 + HP15_3857 0.48 -0.2
4,084,460 + HP15_3857 0.55 -1.0
4,084,482 + HP15_3857 0.57 -0.1
4,084,489 + HP15_3857 0.58 -0.1
4,084,515 + HP15_3857 0.61 +0.8
4,084,543 + HP15_3857 0.63 +3.9
4,084,636 + HP15_3857 0.73 -0.5
4,084,676 + HP15_3857 0.77 -1.3
4,084,699 + HP15_3857 0.79 +2.3
4,084,699 + HP15_3857 0.79 -0.9
4,084,770 - HP15_3857 0.86 +0.7
4,084,770 - HP15_3857 0.86 -0.0
4,084,959 - -0.0
4,084,959 - -0.7
4,085,007 + HP15_3858 0.14 -0.6
4,085,008 - HP15_3858 0.15 +0.2
4,085,083 - HP15_3858 0.31 -2.3
4,085,103 - HP15_3858 0.35 -0.7
4,085,206 + HP15_3858 0.58 +0.7
4,085,274 - HP15_3858 0.73 -0.4
4,085,304 + HP15_3858 0.79 -0.9
4,085,312 - HP15_3858 0.81 +1.5
4,085,357 - +0.3
4,085,438 - HP15_3859 0.14 +2.3
4,085,439 - HP15_3859 0.14 -0.3
4,085,472 + HP15_3859 0.25 -2.2
4,085,520 - HP15_3859 0.41 +0.1
4,085,621 - HP15_3859 0.74 -1.2
4,085,674 - +1.9
4,085,683 + +0.5
4,085,701 + -1.8
4,085,711 - -0.1
4,085,734 - -0.8
4,085,734 - -1.1
4,085,794 - -0.9
4,085,841 - HP15_3860 0.14 -0.1
4,085,890 - HP15_3860 0.23 -0.6
4,085,890 - HP15_3860 0.23 +0.0
4,086,019 + HP15_3860 0.45 -0.4
4,086,019 + HP15_3860 0.45 +0.1
4,086,066 - HP15_3860 0.53 -0.2
4,086,089 + HP15_3860 0.57 +0.1
4,086,250 - HP15_3860 0.84 +2.3
4,086,266 + HP15_3860 0.87 -1.2
4,086,266 + HP15_3860 0.87 +0.8
4,086,274 - HP15_3860 0.88 +1.0
4,086,306 + +1.6
4,086,332 - -0.5
4,086,345 - -0.5
4,086,356 - -0.9
4,086,366 + -0.4

Or see this region's nucleotide sequence