Experiment: m.b. D-Cycloserine 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3855 and HP15_3856 are separated by 23 nucleotides HP15_3856 and HP15_3857 are separated by 138 nucleotides
HP15_3855: HP15_3855 - 2,4-diaminobutyrate 4-transaminase, at 4,081,009 to 4,082,277
_3855
HP15_3856: HP15_3856 - aspartokinase, at 4,082,301 to 4,083,770
_3856
HP15_3857: HP15_3857 - RNA polymerase, sigma 70 subunit, RpoD family, at 4,083,909 to 4,084,907
_3857
Position (kb)
4082
4083
4084 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 4081.341 kb on - strand, within HP15_3855 at 4081.348 kb on - strand, within HP15_3855 at 4081.373 kb on - strand, within HP15_3855 at 4081.421 kb on - strand, within HP15_3855 at 4081.433 kb on - strand, within HP15_3855 at 4081.483 kb on + strand, within HP15_3855 at 4081.483 kb on + strand, within HP15_3855 at 4081.491 kb on - strand, within HP15_3855 at 4081.491 kb on - strand, within HP15_3855 at 4081.491 kb on - strand, within HP15_3855 at 4081.491 kb on - strand, within HP15_3855 at 4081.491 kb on - strand, within HP15_3855 at 4081.491 kb on - strand, within HP15_3855 at 4081.491 kb on - strand, within HP15_3855 at 4081.534 kb on + strand, within HP15_3855 at 4081.542 kb on - strand, within HP15_3855 at 4081.542 kb on - strand, within HP15_3855 at 4081.659 kb on + strand, within HP15_3855 at 4081.667 kb on - strand, within HP15_3855 at 4081.688 kb on - strand, within HP15_3855 at 4081.712 kb on - strand, within HP15_3855 at 4081.792 kb on - strand, within HP15_3855 at 4081.821 kb on + strand, within HP15_3855 at 4081.828 kb on + strand, within HP15_3855 at 4081.837 kb on - strand, within HP15_3855 at 4081.852 kb on - strand, within HP15_3855 at 4081.886 kb on - strand, within HP15_3855 at 4081.935 kb on - strand, within HP15_3855 at 4081.938 kb on - strand, within HP15_3855 at 4081.968 kb on + strand, within HP15_3855 at 4081.974 kb on + strand, within HP15_3855 at 4081.982 kb on - strand, within HP15_3855 at 4081.982 kb on - strand, within HP15_3855 at 4081.987 kb on + strand, within HP15_3855 at 4082.113 kb on + strand, within HP15_3855 at 4082.169 kb on - strand at 4082.221 kb on - strand at 4082.259 kb on + strand at 4082.288 kb on + strand at 4082.381 kb on + strand at 4082.381 kb on + strand at 4082.439 kb on - strand at 4082.439 kb on - strand at 4082.463 kb on - strand, within HP15_3856 at 4082.525 kb on - strand, within HP15_3856 at 4082.526 kb on - strand, within HP15_3856 at 4082.526 kb on - strand, within HP15_3856 at 4082.549 kb on - strand, within HP15_3856 at 4082.552 kb on + strand, within HP15_3856 at 4082.552 kb on + strand, within HP15_3856 at 4082.648 kb on + strand, within HP15_3856 at 4082.663 kb on + strand, within HP15_3856 at 4082.663 kb on + strand, within HP15_3856 at 4082.671 kb on - strand, within HP15_3856 at 4082.673 kb on + strand, within HP15_3856 at 4082.678 kb on + strand, within HP15_3856 at 4082.679 kb on - strand, within HP15_3856 at 4082.681 kb on - strand, within HP15_3856 at 4082.681 kb on - strand, within HP15_3856 at 4082.710 kb on + strand, within HP15_3856 at 4082.795 kb on - strand, within HP15_3856 at 4082.888 kb on + strand, within HP15_3856 at 4082.944 kb on + strand, within HP15_3856 at 4082.952 kb on - strand, within HP15_3856 at 4082.954 kb on + strand, within HP15_3856 at 4082.954 kb on + strand, within HP15_3856 at 4082.962 kb on - strand, within HP15_3856 at 4082.962 kb on - strand, within HP15_3856 at 4082.964 kb on + strand, within HP15_3856 at 4082.972 kb on - strand, within HP15_3856 at 4082.995 kb on - strand, within HP15_3856 at 4083.107 kb on - strand, within HP15_3856 at 4083.135 kb on - strand, within HP15_3856 at 4083.135 kb on - strand, within HP15_3856 at 4083.165 kb on + strand, within HP15_3856 at 4083.240 kb on - strand, within HP15_3856 at 4083.240 kb on - strand, within HP15_3856 at 4083.240 kb on - strand, within HP15_3856 at 4083.248 kb on + strand, within HP15_3856 at 4083.251 kb on - strand, within HP15_3856 at 4083.263 kb on - strand, within HP15_3856 at 4083.450 kb on - strand, within HP15_3856 at 4083.540 kb on - strand, within HP15_3856 at 4083.585 kb on + strand, within HP15_3856 at 4083.585 kb on + strand, within HP15_3856 at 4083.641 kb on + strand at 4083.898 kb on + strand at 4083.925 kb on + strand at 4083.958 kb on + strand at 4083.985 kb on + strand at 4084.075 kb on + strand, within HP15_3857 at 4084.104 kb on + strand, within HP15_3857 at 4084.276 kb on - strand, within HP15_3857 at 4084.307 kb on + strand, within HP15_3857 at 4084.386 kb on + strand, within HP15_3857 at 4084.460 kb on + strand, within HP15_3857 at 4084.482 kb on + strand, within HP15_3857 at 4084.489 kb on + strand, within HP15_3857 at 4084.515 kb on + strand, within HP15_3857 at 4084.543 kb on + strand, within HP15_3857 at 4084.636 kb on + strand, within HP15_3857 at 4084.676 kb on + strand, within HP15_3857 at 4084.699 kb on + strand, within HP15_3857 at 4084.699 kb on + strand, within HP15_3857 at 4084.770 kb on - strand, within HP15_3857 at 4084.770 kb on - strand, within HP15_3857
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.064 mg/ml remove 4,081,341 - HP15_3855 0.26 -1.4 4,081,348 - HP15_3855 0.27 +1.7 4,081,373 - HP15_3855 0.29 +0.1 4,081,421 - HP15_3855 0.32 +1.1 4,081,433 - HP15_3855 0.33 +1.1 4,081,483 + HP15_3855 0.37 +0.0 4,081,483 + HP15_3855 0.37 -0.1 4,081,491 - HP15_3855 0.38 +1.0 4,081,491 - HP15_3855 0.38 +0.0 4,081,491 - HP15_3855 0.38 +0.3 4,081,491 - HP15_3855 0.38 -0.4 4,081,491 - HP15_3855 0.38 -0.4 4,081,491 - HP15_3855 0.38 -1.1 4,081,491 - HP15_3855 0.38 -0.5 4,081,534 + HP15_3855 0.41 -0.3 4,081,542 - HP15_3855 0.42 +0.2 4,081,542 - HP15_3855 0.42 +0.8 4,081,659 + HP15_3855 0.51 +0.0 4,081,667 - HP15_3855 0.52 +0.7 4,081,688 - HP15_3855 0.54 -0.6 4,081,712 - HP15_3855 0.55 -0.1 4,081,792 - HP15_3855 0.62 +0.9 4,081,821 + HP15_3855 0.64 +0.0 4,081,828 + HP15_3855 0.65 -1.0 4,081,837 - HP15_3855 0.65 +0.8 4,081,852 - HP15_3855 0.66 -0.3 4,081,886 - HP15_3855 0.69 +0.5 4,081,935 - HP15_3855 0.73 +0.0 4,081,938 - HP15_3855 0.73 -0.9 4,081,968 + HP15_3855 0.76 -0.8 4,081,974 + HP15_3855 0.76 +0.7 4,081,982 - HP15_3855 0.77 +1.3 4,081,982 - HP15_3855 0.77 -1.3 4,081,987 + HP15_3855 0.77 +0.8 4,082,113 + HP15_3855 0.87 +0.5 4,082,169 - +0.3 4,082,221 - -0.5 4,082,259 + -2.5 4,082,288 + +0.7 4,082,381 + +0.8 4,082,381 + +2.0 4,082,439 - +0.0 4,082,439 - +0.3 4,082,463 - HP15_3856 0.11 -1.3 4,082,525 - HP15_3856 0.15 -0.2 4,082,526 - HP15_3856 0.15 +1.4 4,082,526 - HP15_3856 0.15 -0.2 4,082,549 - HP15_3856 0.17 -0.8 4,082,552 + HP15_3856 0.17 -0.4 4,082,552 + HP15_3856 0.17 +0.9 4,082,648 + HP15_3856 0.24 -0.5 4,082,663 + HP15_3856 0.25 -1.4 4,082,663 + HP15_3856 0.25 +0.2 4,082,671 - HP15_3856 0.25 -0.6 4,082,673 + HP15_3856 0.25 -0.3 4,082,678 + HP15_3856 0.26 +0.8 4,082,679 - HP15_3856 0.26 +0.2 4,082,681 - HP15_3856 0.26 -0.2 4,082,681 - HP15_3856 0.26 +0.4 4,082,710 + HP15_3856 0.28 +1.7 4,082,795 - HP15_3856 0.34 -0.7 4,082,888 + HP15_3856 0.40 +0.0 4,082,944 + HP15_3856 0.44 +0.1 4,082,952 - HP15_3856 0.44 +0.5 4,082,954 + HP15_3856 0.44 -0.5 4,082,954 + HP15_3856 0.44 +1.4 4,082,962 - HP15_3856 0.45 -1.2 4,082,962 - HP15_3856 0.45 -0.1 4,082,964 + HP15_3856 0.45 +1.0 4,082,972 - HP15_3856 0.46 -0.1 4,082,995 - HP15_3856 0.47 -0.0 4,083,107 - HP15_3856 0.55 +1.6 4,083,135 - HP15_3856 0.57 -0.4 4,083,135 - HP15_3856 0.57 +0.4 4,083,165 + HP15_3856 0.59 +0.8 4,083,240 - HP15_3856 0.64 -1.5 4,083,240 - HP15_3856 0.64 +0.2 4,083,240 - HP15_3856 0.64 -0.7 4,083,248 + HP15_3856 0.64 -1.3 4,083,251 - HP15_3856 0.65 +0.2 4,083,263 - HP15_3856 0.65 +0.3 4,083,450 - HP15_3856 0.78 -3.3 4,083,540 - HP15_3856 0.84 +1.2 4,083,585 + HP15_3856 0.87 -0.2 4,083,585 + HP15_3856 0.87 -0.0 4,083,641 + +0.2 4,083,898 + +0.7 4,083,925 + -0.1 4,083,958 + +0.9 4,083,985 + -0.5 4,084,075 + HP15_3857 0.17 -0.6 4,084,104 + HP15_3857 0.20 +1.7 4,084,276 - HP15_3857 0.37 -0.8 4,084,307 + HP15_3857 0.40 +0.1 4,084,386 + HP15_3857 0.48 -0.2 4,084,460 + HP15_3857 0.55 -1.0 4,084,482 + HP15_3857 0.57 -0.1 4,084,489 + HP15_3857 0.58 -0.1 4,084,515 + HP15_3857 0.61 +0.8 4,084,543 + HP15_3857 0.63 +3.9 4,084,636 + HP15_3857 0.73 -0.5 4,084,676 + HP15_3857 0.77 -1.3 4,084,699 + HP15_3857 0.79 +2.3 4,084,699 + HP15_3857 0.79 -0.9 4,084,770 - HP15_3857 0.86 +0.7 4,084,770 - HP15_3857 0.86 -0.0
Or see this region's nucleotide sequence