Experiment: m.b. D-Cycloserine 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3709 and HP15_3710 are separated by 311 nucleotides HP15_3710 and HP15_3711 overlap by 16 nucleotides
HP15_3709: HP15_3709 - lipid A ABC transporter ATPase/inner membrane protein, at 3,916,060 to 3,917,732
_3709
HP15_3710: HP15_3710 - ABC transporter, ATP-binding/permease protein, at 3,918,044 to 3,919,861
_3710
HP15_3711: HP15_3711 - sensory box/GGDEF/GAF/EAL domain protein, at 3,919,846 to 3,921,195
_3711
Position (kb)
3918
3919
3920 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3917.057 kb on + strand, within HP15_3709 at 3917.057 kb on + strand, within HP15_3709 at 3917.170 kb on + strand, within HP15_3709 at 3917.178 kb on - strand, within HP15_3709 at 3917.180 kb on + strand, within HP15_3709 at 3917.180 kb on - strand, within HP15_3709 at 3917.188 kb on - strand, within HP15_3709 at 3917.188 kb on - strand, within HP15_3709 at 3917.270 kb on + strand, within HP15_3709 at 3917.318 kb on - strand, within HP15_3709 at 3917.369 kb on + strand, within HP15_3709 at 3917.370 kb on + strand, within HP15_3709 at 3917.395 kb on - strand, within HP15_3709 at 3917.395 kb on - strand, within HP15_3709 at 3917.399 kb on + strand, within HP15_3709 at 3917.399 kb on + strand, within HP15_3709 at 3917.418 kb on + strand, within HP15_3709 at 3917.418 kb on + strand, within HP15_3709 at 3917.423 kb on + strand, within HP15_3709 at 3917.472 kb on - strand, within HP15_3709 at 3917.489 kb on + strand, within HP15_3709 at 3917.571 kb on - strand at 3917.590 kb on - strand at 3917.637 kb on + strand at 3917.690 kb on + strand at 3917.690 kb on + strand at 3917.690 kb on + strand at 3917.698 kb on - strand at 3917.698 kb on - strand at 3917.698 kb on - strand at 3917.698 kb on - strand at 3917.698 kb on - strand at 3917.698 kb on - strand at 3917.698 kb on - strand at 3917.702 kb on + strand at 3917.739 kb on + strand at 3917.792 kb on - strand at 3917.792 kb on - strand at 3917.850 kb on - strand at 3917.859 kb on + strand at 3917.869 kb on + strand at 3917.879 kb on - strand at 3917.920 kb on - strand at 3917.938 kb on + strand at 3918.099 kb on - strand at 3918.141 kb on + strand at 3918.149 kb on - strand at 3918.149 kb on - strand at 3918.154 kb on - strand at 3918.230 kb on + strand, within HP15_3710 at 3918.235 kb on + strand, within HP15_3710 at 3918.238 kb on - strand, within HP15_3710 at 3918.256 kb on + strand, within HP15_3710 at 3918.306 kb on + strand, within HP15_3710 at 3918.324 kb on - strand, within HP15_3710 at 3918.374 kb on - strand, within HP15_3710 at 3918.495 kb on + strand, within HP15_3710 at 3918.495 kb on + strand, within HP15_3710 at 3918.495 kb on + strand, within HP15_3710 at 3918.503 kb on - strand, within HP15_3710 at 3918.505 kb on + strand, within HP15_3710 at 3918.505 kb on + strand, within HP15_3710 at 3918.513 kb on - strand, within HP15_3710 at 3918.513 kb on - strand, within HP15_3710 at 3918.513 kb on - strand, within HP15_3710 at 3918.562 kb on - strand, within HP15_3710 at 3918.759 kb on - strand, within HP15_3710 at 3918.786 kb on + strand, within HP15_3710 at 3918.786 kb on + strand, within HP15_3710 at 3918.786 kb on + strand, within HP15_3710 at 3918.791 kb on + strand, within HP15_3710 at 3918.834 kb on + strand, within HP15_3710 at 3918.852 kb on - strand, within HP15_3710 at 3918.932 kb on + strand, within HP15_3710 at 3918.986 kb on - strand, within HP15_3710 at 3919.023 kb on - strand, within HP15_3710 at 3919.080 kb on + strand, within HP15_3710 at 3919.135 kb on - strand, within HP15_3710 at 3919.313 kb on + strand, within HP15_3710 at 3919.321 kb on - strand, within HP15_3710 at 3919.321 kb on - strand, within HP15_3710 at 3919.362 kb on - strand, within HP15_3710 at 3919.366 kb on + strand, within HP15_3710 at 3919.371 kb on + strand, within HP15_3710 at 3919.437 kb on - strand, within HP15_3710 at 3919.485 kb on - strand, within HP15_3710 at 3919.644 kb on - strand, within HP15_3710 at 3919.681 kb on - strand at 3919.794 kb on + strand at 3919.894 kb on + strand at 3919.902 kb on - strand at 3919.995 kb on - strand, within HP15_3711 at 3920.074 kb on + strand, within HP15_3711 at 3920.082 kb on - strand, within HP15_3711 at 3920.082 kb on - strand, within HP15_3711 at 3920.098 kb on - strand, within HP15_3711 at 3920.120 kb on + strand, within HP15_3711 at 3920.138 kb on + strand, within HP15_3711 at 3920.146 kb on - strand, within HP15_3711 at 3920.189 kb on - strand, within HP15_3711 at 3920.189 kb on - strand, within HP15_3711 at 3920.222 kb on + strand, within HP15_3711 at 3920.230 kb on - strand, within HP15_3711 at 3920.253 kb on - strand, within HP15_3711 at 3920.281 kb on - strand, within HP15_3711 at 3920.351 kb on + strand, within HP15_3711 at 3920.458 kb on + strand, within HP15_3711 at 3920.458 kb on + strand, within HP15_3711 at 3920.458 kb on + strand, within HP15_3711 at 3920.458 kb on + strand, within HP15_3711 at 3920.458 kb on + strand, within HP15_3711 at 3920.458 kb on + strand, within HP15_3711 at 3920.458 kb on + strand, within HP15_3711 at 3920.458 kb on + strand, within HP15_3711 at 3920.466 kb on - strand, within HP15_3711 at 3920.506 kb on + strand, within HP15_3711 at 3920.543 kb on - strand, within HP15_3711 at 3920.589 kb on + strand, within HP15_3711 at 3920.762 kb on + strand, within HP15_3711 at 3920.762 kb on + strand, within HP15_3711 at 3920.770 kb on - strand, within HP15_3711 at 3920.793 kb on + strand, within HP15_3711
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.064 mg/ml remove 3,917,057 + HP15_3709 0.60 +0.1 3,917,057 + HP15_3709 0.60 -0.4 3,917,170 + HP15_3709 0.66 -0.6 3,917,178 - HP15_3709 0.67 +0.8 3,917,180 + HP15_3709 0.67 -0.8 3,917,180 - HP15_3709 0.67 +0.0 3,917,188 - HP15_3709 0.67 -1.5 3,917,188 - HP15_3709 0.67 +0.2 3,917,270 + HP15_3709 0.72 -0.4 3,917,318 - HP15_3709 0.75 +0.1 3,917,369 + HP15_3709 0.78 +0.2 3,917,370 + HP15_3709 0.78 -0.2 3,917,395 - HP15_3709 0.80 +0.3 3,917,395 - HP15_3709 0.80 -1.0 3,917,399 + HP15_3709 0.80 -0.8 3,917,399 + HP15_3709 0.80 -2.1 3,917,418 + HP15_3709 0.81 -0.5 3,917,418 + HP15_3709 0.81 -2.6 3,917,423 + HP15_3709 0.81 -0.2 3,917,472 - HP15_3709 0.84 +1.4 3,917,489 + HP15_3709 0.85 -0.5 3,917,571 - -0.5 3,917,590 - +0.1 3,917,637 + +0.0 3,917,690 + +0.2 3,917,690 + +0.0 3,917,690 + +0.4 3,917,698 - -0.1 3,917,698 - -0.2 3,917,698 - -0.2 3,917,698 - -0.0 3,917,698 - +0.3 3,917,698 - -2.8 3,917,698 - +0.3 3,917,702 + -0.3 3,917,739 + -0.9 3,917,792 - +0.4 3,917,792 - -1.3 3,917,850 - +1.1 3,917,859 + +1.5 3,917,869 + -0.8 3,917,879 - -0.2 3,917,920 - +0.3 3,917,938 + -1.5 3,918,099 - -0.1 3,918,141 + +0.3 3,918,149 - -0.2 3,918,149 - +1.2 3,918,154 - +1.1 3,918,230 + HP15_3710 0.10 +0.4 3,918,235 + HP15_3710 0.11 -1.6 3,918,238 - HP15_3710 0.11 -0.2 3,918,256 + HP15_3710 0.12 -2.1 3,918,306 + HP15_3710 0.14 +0.1 3,918,324 - HP15_3710 0.15 -0.2 3,918,374 - HP15_3710 0.18 +1.9 3,918,495 + HP15_3710 0.25 -0.2 3,918,495 + HP15_3710 0.25 +0.3 3,918,495 + HP15_3710 0.25 -0.5 3,918,503 - HP15_3710 0.25 +1.8 3,918,505 + HP15_3710 0.25 -0.8 3,918,505 + HP15_3710 0.25 -1.9 3,918,513 - HP15_3710 0.26 +0.2 3,918,513 - HP15_3710 0.26 -1.8 3,918,513 - HP15_3710 0.26 +1.7 3,918,562 - HP15_3710 0.28 +1.5 3,918,759 - HP15_3710 0.39 -1.5 3,918,786 + HP15_3710 0.41 +0.1 3,918,786 + HP15_3710 0.41 +0.2 3,918,786 + HP15_3710 0.41 +0.6 3,918,791 + HP15_3710 0.41 -0.1 3,918,834 + HP15_3710 0.43 -1.2 3,918,852 - HP15_3710 0.44 -0.6 3,918,932 + HP15_3710 0.49 -0.2 3,918,986 - HP15_3710 0.52 +0.4 3,919,023 - HP15_3710 0.54 +0.3 3,919,080 + HP15_3710 0.57 -0.1 3,919,135 - HP15_3710 0.60 +0.8 3,919,313 + HP15_3710 0.70 +0.1 3,919,321 - HP15_3710 0.70 +0.1 3,919,321 - HP15_3710 0.70 -0.9 3,919,362 - HP15_3710 0.72 +2.3 3,919,366 + HP15_3710 0.73 +0.6 3,919,371 + HP15_3710 0.73 -0.0 3,919,437 - HP15_3710 0.77 -0.5 3,919,485 - HP15_3710 0.79 +0.1 3,919,644 - HP15_3710 0.88 -0.6 3,919,681 - -0.0 3,919,794 + -1.4 3,919,894 + +0.0 3,919,902 - +0.4 3,919,995 - HP15_3711 0.11 -0.7 3,920,074 + HP15_3711 0.17 -0.1 3,920,082 - HP15_3711 0.17 +0.8 3,920,082 - HP15_3711 0.17 +0.2 3,920,098 - HP15_3711 0.19 -0.6 3,920,120 + HP15_3711 0.20 -0.2 3,920,138 + HP15_3711 0.22 +1.1 3,920,146 - HP15_3711 0.22 +1.2 3,920,189 - HP15_3711 0.25 +0.2 3,920,189 - HP15_3711 0.25 -0.7 3,920,222 + HP15_3711 0.28 -1.1 3,920,230 - HP15_3711 0.28 +0.8 3,920,253 - HP15_3711 0.30 -1.2 3,920,281 - HP15_3711 0.32 +1.6 3,920,351 + HP15_3711 0.37 -0.2 3,920,458 + HP15_3711 0.45 +0.3 3,920,458 + HP15_3711 0.45 -0.6 3,920,458 + HP15_3711 0.45 -0.6 3,920,458 + HP15_3711 0.45 +0.5 3,920,458 + HP15_3711 0.45 +0.1 3,920,458 + HP15_3711 0.45 -0.9 3,920,458 + HP15_3711 0.45 -0.6 3,920,458 + HP15_3711 0.45 -2.1 3,920,466 - HP15_3711 0.46 -1.2 3,920,506 + HP15_3711 0.49 -1.2 3,920,543 - HP15_3711 0.52 +0.3 3,920,589 + HP15_3711 0.55 +1.3 3,920,762 + HP15_3711 0.68 -0.9 3,920,762 + HP15_3711 0.68 -1.6 3,920,770 - HP15_3711 0.68 -1.0 3,920,793 + HP15_3711 0.70 -0.2
Or see this region's nucleotide sequence