Experiment: m.b. D-Cycloserine 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3707 and HP15_3708 are separated by 205 nucleotides HP15_3708 and HP15_3709 are separated by 89 nucleotides
HP15_3707: HP15_3707 - uncharacterized conserved protein UCP028137, membrane, at 3,913,723 to 3,914,487
_3707
HP15_3708: HP15_3708 - 4-aminobutyrate aminotransferase, at 3,914,693 to 3,915,970
_3708
HP15_3709: HP15_3709 - lipid A ABC transporter ATPase/inner membrane protein, at 3,916,060 to 3,917,732
_3709
Position (kb)
3914
3915
3916 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3914.613 kb on + strand at 3914.622 kb on - strand at 3914.689 kb on - strand at 3914.780 kb on + strand at 3914.787 kb on + strand at 3914.795 kb on - strand at 3915.027 kb on - strand, within HP15_3708 at 3915.049 kb on + strand, within HP15_3708 at 3915.052 kb on - strand, within HP15_3708 at 3915.092 kb on - strand, within HP15_3708 at 3915.103 kb on + strand, within HP15_3708 at 3915.114 kb on + strand, within HP15_3708 at 3915.170 kb on - strand, within HP15_3708 at 3915.229 kb on - strand, within HP15_3708 at 3915.253 kb on - strand, within HP15_3708 at 3915.339 kb on + strand, within HP15_3708 at 3915.347 kb on - strand, within HP15_3708 at 3915.377 kb on + strand, within HP15_3708 at 3915.377 kb on + strand, within HP15_3708 at 3915.385 kb on - strand, within HP15_3708 at 3915.527 kb on - strand, within HP15_3708 at 3915.690 kb on + strand, within HP15_3708 at 3915.730 kb on + strand, within HP15_3708 at 3915.820 kb on + strand, within HP15_3708 at 3915.866 kb on + strand at 3915.871 kb on + strand at 3915.930 kb on + strand at 3915.986 kb on + strand at 3915.988 kb on + strand at 3916.093 kb on - strand at 3916.120 kb on + strand at 3916.164 kb on - strand at 3916.297 kb on - strand, within HP15_3709 at 3916.320 kb on - strand, within HP15_3709 at 3916.327 kb on + strand, within HP15_3709 at 3916.359 kb on + strand, within HP15_3709 at 3916.378 kb on + strand, within HP15_3709 at 3916.378 kb on + strand, within HP15_3709 at 3916.536 kb on - strand, within HP15_3709 at 3916.577 kb on + strand, within HP15_3709 at 3916.622 kb on - strand, within HP15_3709 at 3916.697 kb on + strand, within HP15_3709 at 3916.712 kb on + strand, within HP15_3709 at 3916.749 kb on + strand, within HP15_3709 at 3916.799 kb on - strand, within HP15_3709 at 3916.856 kb on + strand, within HP15_3709 at 3916.856 kb on + strand, within HP15_3709 at 3916.866 kb on + strand, within HP15_3709 at 3916.965 kb on - strand, within HP15_3709
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.064 mg/ml remove 3,914,613 + -2.2 3,914,622 - -0.2 3,914,689 - -0.9 3,914,780 + -0.6 3,914,787 + -0.0 3,914,795 - -0.2 3,915,027 - HP15_3708 0.26 -0.7 3,915,049 + HP15_3708 0.28 -0.6 3,915,052 - HP15_3708 0.28 -0.2 3,915,092 - HP15_3708 0.31 -2.1 3,915,103 + HP15_3708 0.32 -0.2 3,915,114 + HP15_3708 0.33 -1.1 3,915,170 - HP15_3708 0.37 -1.5 3,915,229 - HP15_3708 0.42 -1.6 3,915,253 - HP15_3708 0.44 -3.5 3,915,339 + HP15_3708 0.51 +0.8 3,915,347 - HP15_3708 0.51 -1.2 3,915,377 + HP15_3708 0.54 -0.6 3,915,377 + HP15_3708 0.54 -1.3 3,915,385 - HP15_3708 0.54 -0.1 3,915,527 - HP15_3708 0.65 -0.2 3,915,690 + HP15_3708 0.78 -0.8 3,915,730 + HP15_3708 0.81 -0.4 3,915,820 + HP15_3708 0.88 -0.2 3,915,866 + -0.2 3,915,871 + -0.8 3,915,930 + -1.2 3,915,986 + -1.4 3,915,988 + -0.6 3,916,093 - +1.3 3,916,120 + +0.9 3,916,164 - +1.2 3,916,297 - HP15_3709 0.14 +0.8 3,916,320 - HP15_3709 0.16 +0.1 3,916,327 + HP15_3709 0.16 +0.2 3,916,359 + HP15_3709 0.18 +0.2 3,916,378 + HP15_3709 0.19 +0.3 3,916,378 + HP15_3709 0.19 -1.0 3,916,536 - HP15_3709 0.28 +0.8 3,916,577 + HP15_3709 0.31 -0.0 3,916,622 - HP15_3709 0.34 +1.5 3,916,697 + HP15_3709 0.38 -1.1 3,916,712 + HP15_3709 0.39 +0.2 3,916,749 + HP15_3709 0.41 +0.3 3,916,799 - HP15_3709 0.44 +0.7 3,916,856 + HP15_3709 0.48 -1.0 3,916,856 + HP15_3709 0.48 +0.3 3,916,866 + HP15_3709 0.48 +0.7 3,916,965 - HP15_3709 0.54 -1.3
Or see this region's nucleotide sequence