Experiment: m.b. D-Cycloserine 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3339 and HP15_3340 are separated by 151 nucleotides HP15_3340 and HP15_3341 are separated by 67 nucleotides HP15_3341 and HP15_3342 are separated by 15 nucleotides HP15_3342 and HP15_3343 are separated by 173 nucleotides HP15_3343 and HP15_3344 are separated by 89 nucleotides
HP15_3339: HP15_3339 - acyl-CoA dehydrogenase domain protein, at 3,500,467 to 3,502,167
_3339
HP15_3340: HP15_3340 - protein containing DUF503, at 3,502,319 to 3,502,663
_3340
HP15_3341: HP15_3341 - hypothetical protein, at 3,502,731 to 3,502,835
_3341
HP15_3342: HP15_3342 - pyridoxal-dependent decarboxylase, at 3,502,851 to 3,504,527
_3342
HP15_3343: HP15_3343 - conserved hypothetical protein, at 3,504,701 to 3,504,967
_3343
HP15_3344: HP15_3344 - phosphate transporter family protein, at 3,505,057 to 3,506,616
_3344
Position (kb)
3502
3503
3504
3505 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 3502.000 kb on + strand at 3502.008 kb on - strand at 3502.008 kb on - strand at 3502.008 kb on - strand at 3502.016 kb on + strand at 3502.024 kb on - strand at 3502.024 kb on - strand at 3502.176 kb on - strand at 3502.250 kb on - strand at 3502.361 kb on + strand, within HP15_3340 at 3502.367 kb on - strand, within HP15_3340 at 3502.432 kb on + strand, within HP15_3340 at 3502.433 kb on - strand, within HP15_3340 at 3502.523 kb on + strand, within HP15_3340 at 3502.523 kb on + strand, within HP15_3340 at 3502.531 kb on - strand, within HP15_3340 at 3502.538 kb on + strand, within HP15_3340 at 3502.553 kb on + strand, within HP15_3340 at 3502.561 kb on - strand, within HP15_3340 at 3502.563 kb on + strand, within HP15_3340 at 3502.575 kb on + strand, within HP15_3340 at 3502.666 kb on + strand at 3502.666 kb on + strand at 3502.674 kb on - strand at 3502.675 kb on + strand at 3502.707 kb on + strand at 3502.848 kb on + strand at 3504.523 kb on + strand at 3504.530 kb on - strand at 3504.645 kb on + strand at 3504.696 kb on - strand at 3504.894 kb on + strand, within HP15_3343 at 3504.989 kb on + strand at 3504.989 kb on + strand at 3505.121 kb on - strand at 3505.208 kb on + strand at 3505.208 kb on + strand at 3505.216 kb on - strand, within HP15_3344 at 3505.216 kb on - strand, within HP15_3344 at 3505.216 kb on - strand, within HP15_3344 at 3505.343 kb on + strand, within HP15_3344 at 3505.432 kb on + strand, within HP15_3344 at 3505.457 kb on + strand, within HP15_3344 at 3505.490 kb on + strand, within HP15_3344 at 3505.504 kb on + strand, within HP15_3344 at 3505.507 kb on - strand, within HP15_3344 at 3505.507 kb on - strand, within HP15_3344
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.064 mg/ml remove 3,502,000 + +0.5 3,502,008 - +0.6 3,502,008 - -0.4 3,502,008 - -1.1 3,502,016 + +1.0 3,502,024 - +0.8 3,502,024 - -0.2 3,502,176 - +0.7 3,502,250 - +0.3 3,502,361 + HP15_3340 0.12 +1.2 3,502,367 - HP15_3340 0.14 +0.1 3,502,432 + HP15_3340 0.33 +0.3 3,502,433 - HP15_3340 0.33 -0.7 3,502,523 + HP15_3340 0.59 -1.1 3,502,523 + HP15_3340 0.59 -0.8 3,502,531 - HP15_3340 0.61 -0.1 3,502,538 + HP15_3340 0.63 -1.8 3,502,553 + HP15_3340 0.68 +0.2 3,502,561 - HP15_3340 0.70 -0.2 3,502,563 + HP15_3340 0.71 +0.0 3,502,575 + HP15_3340 0.74 -0.1 3,502,666 + -1.0 3,502,666 + +1.2 3,502,674 - +0.3 3,502,675 + +0.3 3,502,707 + +2.2 3,502,848 + -1.0 3,504,523 + +1.2 3,504,530 - -0.5 3,504,645 + -0.0 3,504,696 - -0.3 3,504,894 + HP15_3343 0.72 -0.2 3,504,989 + -0.2 3,504,989 + -1.2 3,505,121 - +0.8 3,505,208 + -1.8 3,505,208 + +0.0 3,505,216 - HP15_3344 0.10 -1.9 3,505,216 - HP15_3344 0.10 -2.2 3,505,216 - HP15_3344 0.10 -0.5 3,505,343 + HP15_3344 0.18 -1.6 3,505,432 + HP15_3344 0.24 -1.5 3,505,457 + HP15_3344 0.26 -2.1 3,505,490 + HP15_3344 0.28 -3.2 3,505,504 + HP15_3344 0.29 -4.2 3,505,507 - HP15_3344 0.29 -3.0 3,505,507 - HP15_3344 0.29 -2.6
Or see this region's nucleotide sequence