Strain Fitness in Marinobacter adhaerens HP15 around HP15_3340

Experiment: m.b. D-Cycloserine 0.064 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3339 and HP15_3340 are separated by 151 nucleotidesHP15_3340 and HP15_3341 are separated by 67 nucleotidesHP15_3341 and HP15_3342 are separated by 15 nucleotides HP15_3339: HP15_3339 - acyl-CoA dehydrogenase domain protein, at 3,500,467 to 3,502,167 _3339 HP15_3340: HP15_3340 - protein containing DUF503, at 3,502,319 to 3,502,663 _3340 HP15_3341: HP15_3341 - hypothetical protein, at 3,502,731 to 3,502,835 _3341 HP15_3342: HP15_3342 - pyridoxal-dependent decarboxylase, at 3,502,851 to 3,504,527 _3342 Position (kb) 3502 3503Strain fitness (log2 ratio) -2 -1 0 1 2at 3501.357 kb on + strand, within HP15_3339at 3501.365 kb on - strand, within HP15_3339at 3501.465 kb on - strand, within HP15_3339at 3501.477 kb on - strand, within HP15_3339at 3501.509 kb on - strand, within HP15_3339at 3501.528 kb on + strand, within HP15_3339at 3501.530 kb on + strand, within HP15_3339at 3501.582 kb on + strand, within HP15_3339at 3501.582 kb on + strand, within HP15_3339at 3501.582 kb on + strand, within HP15_3339at 3501.582 kb on + strand, within HP15_3339at 3501.582 kb on + strand, within HP15_3339at 3501.582 kb on + strand, within HP15_3339at 3501.582 kb on + strand, within HP15_3339at 3501.582 kb on + strand, within HP15_3339at 3501.585 kb on - strand, within HP15_3339at 3501.590 kb on - strand, within HP15_3339at 3501.590 kb on - strand, within HP15_3339at 3501.590 kb on - strand, within HP15_3339at 3501.590 kb on - strand, within HP15_3339at 3501.590 kb on - strand, within HP15_3339at 3501.590 kb on - strand, within HP15_3339at 3501.590 kb on - strand, within HP15_3339at 3501.590 kb on - strand, within HP15_3339at 3501.590 kb on - strand, within HP15_3339at 3501.590 kb on - strand, within HP15_3339at 3501.590 kb on - strand, within HP15_3339at 3501.590 kb on - strand, within HP15_3339at 3501.590 kb on - strand, within HP15_3339at 3501.590 kb on - strand, within HP15_3339at 3501.590 kb on - strand, within HP15_3339at 3501.612 kb on + strand, within HP15_3339at 3501.651 kb on + strand, within HP15_3339at 3501.692 kb on + strand, within HP15_3339at 3502.000 kb on + strandat 3502.008 kb on - strandat 3502.008 kb on - strandat 3502.008 kb on - strandat 3502.016 kb on + strandat 3502.024 kb on - strandat 3502.024 kb on - strandat 3502.176 kb on - strandat 3502.250 kb on - strandat 3502.361 kb on + strand, within HP15_3340at 3502.367 kb on - strand, within HP15_3340at 3502.432 kb on + strand, within HP15_3340at 3502.433 kb on - strand, within HP15_3340at 3502.523 kb on + strand, within HP15_3340at 3502.523 kb on + strand, within HP15_3340at 3502.531 kb on - strand, within HP15_3340at 3502.538 kb on + strand, within HP15_3340at 3502.553 kb on + strand, within HP15_3340at 3502.561 kb on - strand, within HP15_3340at 3502.563 kb on + strand, within HP15_3340at 3502.575 kb on + strand, within HP15_3340at 3502.666 kb on + strandat 3502.666 kb on + strandat 3502.674 kb on - strandat 3502.675 kb on + strandat 3502.707 kb on + strandat 3502.848 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.064 mg/ml
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3,501,357 + HP15_3339 0.52 +1.4
3,501,365 - HP15_3339 0.53 +0.3
3,501,465 - HP15_3339 0.59 +0.7
3,501,477 - HP15_3339 0.59 +1.1
3,501,509 - HP15_3339 0.61 -0.1
3,501,528 + HP15_3339 0.62 -0.3
3,501,530 + HP15_3339 0.62 +0.8
3,501,582 + HP15_3339 0.66 -0.5
3,501,582 + HP15_3339 0.66 -0.8
3,501,582 + HP15_3339 0.66 -1.0
3,501,582 + HP15_3339 0.66 +0.2
3,501,582 + HP15_3339 0.66 -0.0
3,501,582 + HP15_3339 0.66 -1.2
3,501,582 + HP15_3339 0.66 +0.6
3,501,582 + HP15_3339 0.66 +0.1
3,501,585 - HP15_3339 0.66 -0.2
3,501,590 - HP15_3339 0.66 -0.3
3,501,590 - HP15_3339 0.66 +0.0
3,501,590 - HP15_3339 0.66 +0.4
3,501,590 - HP15_3339 0.66 -1.3
3,501,590 - HP15_3339 0.66 +0.8
3,501,590 - HP15_3339 0.66 -1.0
3,501,590 - HP15_3339 0.66 -0.2
3,501,590 - HP15_3339 0.66 -0.7
3,501,590 - HP15_3339 0.66 -0.6
3,501,590 - HP15_3339 0.66 +0.3
3,501,590 - HP15_3339 0.66 +0.5
3,501,590 - HP15_3339 0.66 +1.4
3,501,590 - HP15_3339 0.66 -0.9
3,501,590 - HP15_3339 0.66 -0.4
3,501,590 - HP15_3339 0.66 +1.8
3,501,612 + HP15_3339 0.67 +0.6
3,501,651 + HP15_3339 0.70 +0.2
3,501,692 + HP15_3339 0.72 +0.2
3,502,000 + +0.5
3,502,008 - +0.6
3,502,008 - -0.4
3,502,008 - -1.1
3,502,016 + +1.0
3,502,024 - +0.8
3,502,024 - -0.2
3,502,176 - +0.7
3,502,250 - +0.3
3,502,361 + HP15_3340 0.12 +1.2
3,502,367 - HP15_3340 0.14 +0.1
3,502,432 + HP15_3340 0.33 +0.3
3,502,433 - HP15_3340 0.33 -0.7
3,502,523 + HP15_3340 0.59 -1.1
3,502,523 + HP15_3340 0.59 -0.8
3,502,531 - HP15_3340 0.61 -0.1
3,502,538 + HP15_3340 0.63 -1.8
3,502,553 + HP15_3340 0.68 +0.2
3,502,561 - HP15_3340 0.70 -0.2
3,502,563 + HP15_3340 0.71 +0.0
3,502,575 + HP15_3340 0.74 -0.1
3,502,666 + -1.0
3,502,666 + +1.2
3,502,674 - +0.3
3,502,675 + +0.3
3,502,707 + +2.2
3,502,848 + -1.0

Or see this region's nucleotide sequence