Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c31750

Experiment: m.b. Vanillin 1.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c31730 and PGA1_c31740 are separated by 21 nucleotidesPGA1_c31740 and PGA1_c31750 are separated by 61 nucleotidesPGA1_c31750 and PGA1_c31760 are separated by 71 nucleotidesPGA1_c31760 and PGA1_c31770 are separated by 208 nucleotides PGA1_c31730: PGA1_c31730 - hypothetical protein, at 3,316,367 to 3,317,128 _c31730 PGA1_c31740: PGA1_c31740 - hypothetical protein, at 3,317,150 to 3,317,527 _c31740 PGA1_c31750: PGA1_c31750 - ABC transporter, ATP-binding protein, at 3,317,589 to 3,318,521 _c31750 PGA1_c31760: PGA1_c31760 - Uncharacterized protein conserved in bacteria, at 3,318,593 to 3,318,775 _c31760 PGA1_c31770: PGA1_c31770 - putative signaling protein with diguanylate cyclase/phosphodiesterase activity, at 3,318,984 to 3,321,038 _c31770 Position (kb) 3317 3318 3319Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3316.589 kb on - strand, within PGA1_c31730at 3316.676 kb on - strand, within PGA1_c31730at 3316.742 kb on - strand, within PGA1_c31730at 3316.809 kb on - strand, within PGA1_c31730at 3316.846 kb on - strand, within PGA1_c31730at 3316.847 kb on - strand, within PGA1_c31730at 3316.918 kb on + strand, within PGA1_c31730at 3316.918 kb on + strand, within PGA1_c31730at 3316.928 kb on + strand, within PGA1_c31730at 3316.928 kb on + strand, within PGA1_c31730at 3316.928 kb on + strand, within PGA1_c31730at 3316.994 kb on + strand, within PGA1_c31730at 3316.996 kb on - strand, within PGA1_c31730at 3316.999 kb on + strand, within PGA1_c31730at 3317.004 kb on + strand, within PGA1_c31730at 3317.007 kb on - strand, within PGA1_c31730at 3317.007 kb on - strand, within PGA1_c31730at 3317.007 kb on - strand, within PGA1_c31730at 3317.007 kb on - strand, within PGA1_c31730at 3317.012 kb on - strand, within PGA1_c31730at 3317.076 kb on + strandat 3317.082 kb on - strandat 3317.084 kb on - strandat 3317.084 kb on - strandat 3317.084 kb on - strandat 3317.086 kb on + strandat 3317.091 kb on + strandat 3317.091 kb on + strandat 3317.091 kb on + strandat 3317.091 kb on + strandat 3317.099 kb on - strandat 3317.099 kb on - strandat 3317.099 kb on - strandat 3317.109 kb on - strandat 3317.109 kb on - strandat 3317.122 kb on + strandat 3317.160 kb on - strandat 3317.198 kb on - strand, within PGA1_c31740at 3317.198 kb on - strand, within PGA1_c31740at 3317.222 kb on - strand, within PGA1_c31740at 3317.283 kb on + strand, within PGA1_c31740at 3317.283 kb on + strand, within PGA1_c31740at 3317.314 kb on + strand, within PGA1_c31740at 3317.337 kb on - strand, within PGA1_c31740at 3317.357 kb on + strand, within PGA1_c31740at 3317.357 kb on + strand, within PGA1_c31740at 3317.362 kb on - strand, within PGA1_c31740at 3317.365 kb on - strand, within PGA1_c31740at 3317.381 kb on - strand, within PGA1_c31740at 3317.416 kb on + strand, within PGA1_c31740at 3317.416 kb on + strand, within PGA1_c31740at 3317.416 kb on + strand, within PGA1_c31740at 3317.416 kb on + strand, within PGA1_c31740at 3317.416 kb on + strand, within PGA1_c31740at 3317.424 kb on - strand, within PGA1_c31740at 3317.424 kb on - strand, within PGA1_c31740at 3317.424 kb on - strand, within PGA1_c31740at 3317.424 kb on - strand, within PGA1_c31740at 3317.424 kb on - strand, within PGA1_c31740at 3317.424 kb on - strand, within PGA1_c31740at 3317.424 kb on - strand, within PGA1_c31740at 3317.424 kb on - strand, within PGA1_c31740at 3317.429 kb on - strand, within PGA1_c31740at 3317.429 kb on - strand, within PGA1_c31740at 3317.434 kb on - strand, within PGA1_c31740at 3317.436 kb on + strand, within PGA1_c31740at 3317.436 kb on + strand, within PGA1_c31740at 3317.436 kb on + strand, within PGA1_c31740at 3317.462 kb on - strand, within PGA1_c31740at 3317.472 kb on - strand, within PGA1_c31740at 3317.485 kb on + strand, within PGA1_c31740at 3317.549 kb on - strandat 3317.575 kb on - strandat 3317.593 kb on - strandat 3317.644 kb on + strandat 3317.651 kb on - strandat 3317.652 kb on - strandat 3317.652 kb on - strandat 3317.741 kb on - strand, within PGA1_c31750at 3317.753 kb on + strand, within PGA1_c31750at 3317.753 kb on + strand, within PGA1_c31750at 3317.761 kb on - strand, within PGA1_c31750at 3317.761 kb on - strand, within PGA1_c31750at 3317.812 kb on + strand, within PGA1_c31750at 3317.812 kb on + strand, within PGA1_c31750at 3317.812 kb on + strand, within PGA1_c31750at 3317.812 kb on + strand, within PGA1_c31750at 3317.820 kb on - strand, within PGA1_c31750at 3317.877 kb on - strand, within PGA1_c31750at 3317.877 kb on - strand, within PGA1_c31750at 3317.918 kb on + strand, within PGA1_c31750at 3317.926 kb on - strand, within PGA1_c31750at 3317.932 kb on - strand, within PGA1_c31750at 3317.945 kb on + strand, within PGA1_c31750at 3317.955 kb on - strand, within PGA1_c31750at 3318.048 kb on - strand, within PGA1_c31750at 3318.066 kb on + strand, within PGA1_c31750at 3318.111 kb on - strand, within PGA1_c31750at 3318.268 kb on - strand, within PGA1_c31750at 3318.307 kb on + strand, within PGA1_c31750at 3318.331 kb on + strand, within PGA1_c31750at 3318.338 kb on + strand, within PGA1_c31750at 3318.338 kb on + strand, within PGA1_c31750at 3318.351 kb on - strand, within PGA1_c31750at 3318.423 kb on + strand, within PGA1_c31750at 3318.428 kb on + strandat 3318.428 kb on + strandat 3318.431 kb on - strandat 3318.436 kb on + strandat 3318.436 kb on - strandat 3318.521 kb on + strandat 3318.582 kb on - strandat 3318.701 kb on + strand, within PGA1_c31760at 3318.709 kb on - strand, within PGA1_c31760at 3318.709 kb on - strand, within PGA1_c31760at 3318.721 kb on + strand, within PGA1_c31760at 3318.729 kb on - strand, within PGA1_c31760at 3318.844 kb on + strandat 3318.844 kb on + strandat 3318.846 kb on + strandat 3318.846 kb on - strandat 3318.854 kb on - strandat 3318.891 kb on + strandat 3318.891 kb on + strandat 3318.891 kb on + strandat 3318.891 kb on + strandat 3318.899 kb on - strandat 3318.899 kb on - strandat 3318.899 kb on - strandat 3318.899 kb on - strandat 3318.906 kb on + strandat 3318.911 kb on + strandat 3318.919 kb on - strandat 3318.919 kb on - strandat 3318.919 kb on - strandat 3318.986 kb on + strandat 3318.986 kb on + strandat 3318.986 kb on + strandat 3318.989 kb on - strandat 3318.989 kb on - strandat 3318.994 kb on - strandat 3318.999 kb on - strandat 3319.004 kb on - strandat 3319.004 kb on - strandat 3319.019 kb on - strandat 3319.029 kb on - strandat 3319.063 kb on + strandat 3319.063 kb on + strandat 3319.085 kb on - strandat 3319.129 kb on + strandat 3319.134 kb on + strandat 3319.143 kb on + strandat 3319.184 kb on - strandat 3319.195 kb on + strand, within PGA1_c31770at 3319.220 kb on + strand, within PGA1_c31770at 3319.220 kb on + strand, within PGA1_c31770at 3319.227 kb on - strand, within PGA1_c31770at 3319.233 kb on - strand, within PGA1_c31770at 3319.238 kb on - strand, within PGA1_c31770at 3319.248 kb on - strand, within PGA1_c31770at 3319.294 kb on + strand, within PGA1_c31770at 3319.359 kb on + strand, within PGA1_c31770at 3319.367 kb on - strand, within PGA1_c31770at 3319.371 kb on + strand, within PGA1_c31770at 3319.447 kb on + strand, within PGA1_c31770at 3319.447 kb on + strand, within PGA1_c31770at 3319.447 kb on + strand, within PGA1_c31770at 3319.452 kb on + strand, within PGA1_c31770at 3319.452 kb on + strand, within PGA1_c31770at 3319.452 kb on + strand, within PGA1_c31770at 3319.452 kb on + strand, within PGA1_c31770at 3319.452 kb on + strand, within PGA1_c31770at 3319.452 kb on + strand, within PGA1_c31770at 3319.452 kb on + strand, within PGA1_c31770at 3319.455 kb on - strand, within PGA1_c31770at 3319.455 kb on - strand, within PGA1_c31770at 3319.455 kb on - strand, within PGA1_c31770at 3319.455 kb on - strand, within PGA1_c31770at 3319.455 kb on - strand, within PGA1_c31770at 3319.455 kb on - strand, within PGA1_c31770at 3319.460 kb on - strand, within PGA1_c31770at 3319.460 kb on - strand, within PGA1_c31770at 3319.460 kb on - strand, within PGA1_c31770at 3319.460 kb on - strand, within PGA1_c31770at 3319.460 kb on - strand, within PGA1_c31770at 3319.460 kb on - strand, within PGA1_c31770at 3319.497 kb on - strand, within PGA1_c31770at 3319.502 kb on + strand, within PGA1_c31770at 3319.510 kb on - strand, within PGA1_c31770at 3319.510 kb on - strand, within PGA1_c31770at 3319.510 kb on - strand, within PGA1_c31770at 3319.521 kb on + strand, within PGA1_c31770

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Vanillin 1.25 mM
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3,316,589 - PGA1_c31730 0.29 +0.7
3,316,676 - PGA1_c31730 0.41 -0.3
3,316,742 - PGA1_c31730 0.49 +0.2
3,316,809 - PGA1_c31730 0.58 +0.5
3,316,846 - PGA1_c31730 0.63 +0.5
3,316,847 - PGA1_c31730 0.63 +0.4
3,316,918 + PGA1_c31730 0.72 +0.3
3,316,918 + PGA1_c31730 0.72 -0.8
3,316,928 + PGA1_c31730 0.74 +1.3
3,316,928 + PGA1_c31730 0.74 +0.7
3,316,928 + PGA1_c31730 0.74 +1.0
3,316,994 + PGA1_c31730 0.82 +2.0
3,316,996 - PGA1_c31730 0.83 +0.4
3,316,999 + PGA1_c31730 0.83 -0.9
3,317,004 + PGA1_c31730 0.84 -0.6
3,317,007 - PGA1_c31730 0.84 +1.1
3,317,007 - PGA1_c31730 0.84 +0.4
3,317,007 - PGA1_c31730 0.84 +0.4
3,317,007 - PGA1_c31730 0.84 +1.1
3,317,012 - PGA1_c31730 0.85 +1.7
3,317,076 + +1.6
3,317,082 - +0.1
3,317,084 - +1.1
3,317,084 - +0.1
3,317,084 - +1.2
3,317,086 + -2.6
3,317,091 + -1.6
3,317,091 + +1.4
3,317,091 + -0.1
3,317,091 + +1.8
3,317,099 - -1.4
3,317,099 - +0.4
3,317,099 - +0.9
3,317,109 - +0.0
3,317,109 - +0.9
3,317,122 + +0.6
3,317,160 - -0.3
3,317,198 - PGA1_c31740 0.13 +1.1
3,317,198 - PGA1_c31740 0.13 +0.8
3,317,222 - PGA1_c31740 0.19 +0.9
3,317,283 + PGA1_c31740 0.35 +0.4
3,317,283 + PGA1_c31740 0.35 -0.5
3,317,314 + PGA1_c31740 0.43 +0.5
3,317,337 - PGA1_c31740 0.49 +1.0
3,317,357 + PGA1_c31740 0.55 -0.5
3,317,357 + PGA1_c31740 0.55 -0.5
3,317,362 - PGA1_c31740 0.56 +0.1
3,317,365 - PGA1_c31740 0.57 -0.7
3,317,381 - PGA1_c31740 0.61 +0.2
3,317,416 + PGA1_c31740 0.70 -0.3
3,317,416 + PGA1_c31740 0.70 +0.1
3,317,416 + PGA1_c31740 0.70 -0.0
3,317,416 + PGA1_c31740 0.70 -1.2
3,317,416 + PGA1_c31740 0.70 +0.1
3,317,424 - PGA1_c31740 0.72 -0.4
3,317,424 - PGA1_c31740 0.72 +0.0
3,317,424 - PGA1_c31740 0.72 +1.1
3,317,424 - PGA1_c31740 0.72 +0.0
3,317,424 - PGA1_c31740 0.72 -0.6
3,317,424 - PGA1_c31740 0.72 -1.0
3,317,424 - PGA1_c31740 0.72 +1.1
3,317,424 - PGA1_c31740 0.72 +1.5
3,317,429 - PGA1_c31740 0.74 -0.2
3,317,429 - PGA1_c31740 0.74 +0.1
3,317,434 - PGA1_c31740 0.75 +1.8
3,317,436 + PGA1_c31740 0.76 +1.1
3,317,436 + PGA1_c31740 0.76 -0.3
3,317,436 + PGA1_c31740 0.76 +1.3
3,317,462 - PGA1_c31740 0.83 -1.2
3,317,472 - PGA1_c31740 0.85 +0.3
3,317,485 + PGA1_c31740 0.89 -1.4
3,317,549 - -1.1
3,317,575 - -0.3
3,317,593 - +1.0
3,317,644 + +0.1
3,317,651 - +0.5
3,317,652 - -1.2
3,317,652 - +0.8
3,317,741 - PGA1_c31750 0.16 -1.4
3,317,753 + PGA1_c31750 0.18 +0.8
3,317,753 + PGA1_c31750 0.18 -1.5
3,317,761 - PGA1_c31750 0.18 -0.1
3,317,761 - PGA1_c31750 0.18 -1.0
3,317,812 + PGA1_c31750 0.24 -1.7
3,317,812 + PGA1_c31750 0.24 +1.6
3,317,812 + PGA1_c31750 0.24 +1.0
3,317,812 + PGA1_c31750 0.24 +1.0
3,317,820 - PGA1_c31750 0.25 -0.7
3,317,877 - PGA1_c31750 0.31 +1.6
3,317,877 - PGA1_c31750 0.31 +0.8
3,317,918 + PGA1_c31750 0.35 +1.4
3,317,926 - PGA1_c31750 0.36 -1.4
3,317,932 - PGA1_c31750 0.37 +0.5
3,317,945 + PGA1_c31750 0.38 +1.7
3,317,955 - PGA1_c31750 0.39 +2.0
3,318,048 - PGA1_c31750 0.49 -1.4
3,318,066 + PGA1_c31750 0.51 +1.1
3,318,111 - PGA1_c31750 0.56 +1.3
3,318,268 - PGA1_c31750 0.73 +0.7
3,318,307 + PGA1_c31750 0.77 -0.2
3,318,331 + PGA1_c31750 0.80 +1.4
3,318,338 + PGA1_c31750 0.80 +0.7
3,318,338 + PGA1_c31750 0.80 +1.1
3,318,351 - PGA1_c31750 0.82 +0.8
3,318,423 + PGA1_c31750 0.89 +0.4
3,318,428 + -2.7
3,318,428 + -0.8
3,318,431 - +0.1
3,318,436 + -0.1
3,318,436 - -0.2
3,318,521 + -0.1
3,318,582 - +0.5
3,318,701 + PGA1_c31760 0.59 +0.5
3,318,709 - PGA1_c31760 0.63 +0.4
3,318,709 - PGA1_c31760 0.63 -1.4
3,318,721 + PGA1_c31760 0.70 +0.3
3,318,729 - PGA1_c31760 0.74 +0.6
3,318,844 + +1.3
3,318,844 + -0.3
3,318,846 + -1.0
3,318,846 - +0.2
3,318,854 - -0.3
3,318,891 + +1.3
3,318,891 + +1.1
3,318,891 + +3.0
3,318,891 + +1.9
3,318,899 - -1.6
3,318,899 - -0.1
3,318,899 - -0.6
3,318,899 - +0.5
3,318,906 + -1.0
3,318,911 + +0.3
3,318,919 - -0.3
3,318,919 - +1.8
3,318,919 - -0.0
3,318,986 + +1.9
3,318,986 + +2.0
3,318,986 + -0.4
3,318,989 - +1.3
3,318,989 - +0.7
3,318,994 - -0.2
3,318,999 - -1.0
3,319,004 - +0.6
3,319,004 - +0.1
3,319,019 - +0.6
3,319,029 - -0.2
3,319,063 + +0.0
3,319,063 + +0.7
3,319,085 - +0.8
3,319,129 + +0.9
3,319,134 + -0.3
3,319,143 + -1.9
3,319,184 - +1.1
3,319,195 + PGA1_c31770 0.10 -0.8
3,319,220 + PGA1_c31770 0.11 -0.4
3,319,220 + PGA1_c31770 0.11 -0.9
3,319,227 - PGA1_c31770 0.12 +1.5
3,319,233 - PGA1_c31770 0.12 +0.2
3,319,238 - PGA1_c31770 0.12 +1.1
3,319,248 - PGA1_c31770 0.13 -2.0
3,319,294 + PGA1_c31770 0.15 +0.9
3,319,359 + PGA1_c31770 0.18 +1.3
3,319,367 - PGA1_c31770 0.19 +1.0
3,319,371 + PGA1_c31770 0.19 +0.0
3,319,447 + PGA1_c31770 0.23 -1.8
3,319,447 + PGA1_c31770 0.23 +0.1
3,319,447 + PGA1_c31770 0.23 +0.4
3,319,452 + PGA1_c31770 0.23 -1.4
3,319,452 + PGA1_c31770 0.23 +0.1
3,319,452 + PGA1_c31770 0.23 +0.4
3,319,452 + PGA1_c31770 0.23 -0.7
3,319,452 + PGA1_c31770 0.23 +0.5
3,319,452 + PGA1_c31770 0.23 -0.1
3,319,452 + PGA1_c31770 0.23 -0.3
3,319,455 - PGA1_c31770 0.23 -1.8
3,319,455 - PGA1_c31770 0.23 -0.6
3,319,455 - PGA1_c31770 0.23 +1.1
3,319,455 - PGA1_c31770 0.23 +0.4
3,319,455 - PGA1_c31770 0.23 -0.3
3,319,455 - PGA1_c31770 0.23 -0.1
3,319,460 - PGA1_c31770 0.23 +0.5
3,319,460 - PGA1_c31770 0.23 -0.1
3,319,460 - PGA1_c31770 0.23 -0.4
3,319,460 - PGA1_c31770 0.23 +0.3
3,319,460 - PGA1_c31770 0.23 +2.5
3,319,460 - PGA1_c31770 0.23 -0.3
3,319,497 - PGA1_c31770 0.25 -0.0
3,319,502 + PGA1_c31770 0.25 +1.3
3,319,510 - PGA1_c31770 0.26 +0.7
3,319,510 - PGA1_c31770 0.26 +1.4
3,319,510 - PGA1_c31770 0.26 -1.1
3,319,521 + PGA1_c31770 0.26 +1.5

Or see this region's nucleotide sequence