Experiment: m.b. D-Cycloserine 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3036 and HP15_3037 are separated by 151 nucleotides HP15_3037 and HP15_3038 are separated by 22 nucleotides
HP15_3036: HP15_3036 - efflux transporter, RND family, MFP subunit, at 3,182,051 to 3,183,145
_3036
HP15_3037: HP15_3037 - transcriptional regulator, TetR family protein, at 3,183,297 to 3,183,932
_3037
HP15_3038: HP15_3038 - N-succinylarginine dihydrolase, at 3,183,955 to 3,185,295
_3038
Position (kb)
3183
3184 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3182.319 kb on - strand, within HP15_3036 at 3182.367 kb on + strand, within HP15_3036 at 3182.372 kb on + strand, within HP15_3036 at 3182.382 kb on + strand, within HP15_3036 at 3182.428 kb on - strand, within HP15_3036 at 3182.447 kb on - strand, within HP15_3036 at 3182.447 kb on - strand, within HP15_3036 at 3182.491 kb on + strand, within HP15_3036 at 3182.499 kb on - strand, within HP15_3036 at 3182.504 kb on + strand, within HP15_3036 at 3182.574 kb on + strand, within HP15_3036 at 3182.574 kb on + strand, within HP15_3036 at 3182.582 kb on - strand, within HP15_3036 at 3182.620 kb on - strand, within HP15_3036 at 3182.668 kb on + strand, within HP15_3036 at 3182.676 kb on - strand, within HP15_3036 at 3182.676 kb on - strand, within HP15_3036 at 3182.688 kb on + strand, within HP15_3036 at 3182.696 kb on - strand, within HP15_3036 at 3182.714 kb on + strand, within HP15_3036 at 3182.749 kb on + strand, within HP15_3036 at 3182.789 kb on - strand, within HP15_3036 at 3182.801 kb on + strand, within HP15_3036 at 3182.864 kb on + strand, within HP15_3036 at 3182.907 kb on - strand, within HP15_3036 at 3182.907 kb on - strand, within HP15_3036 at 3183.046 kb on - strand at 3183.362 kb on - strand, within HP15_3037 at 3183.413 kb on - strand, within HP15_3037 at 3183.695 kb on - strand, within HP15_3037 at 3183.803 kb on - strand, within HP15_3037 at 3183.813 kb on + strand, within HP15_3037 at 3183.813 kb on + strand, within HP15_3037 at 3183.813 kb on + strand, within HP15_3037 at 3183.831 kb on - strand, within HP15_3037 at 3183.857 kb on + strand, within HP15_3037 at 3183.865 kb on - strand, within HP15_3037 at 3183.906 kb on - strand at 3184.014 kb on - strand at 3184.071 kb on - strand at 3184.114 kb on - strand, within HP15_3038 at 3184.131 kb on - strand, within HP15_3038 at 3184.179 kb on + strand, within HP15_3038 at 3184.283 kb on + strand, within HP15_3038 at 3184.286 kb on - strand, within HP15_3038 at 3184.340 kb on + strand, within HP15_3038 at 3184.368 kb on + strand, within HP15_3038 at 3184.376 kb on - strand, within HP15_3038 at 3184.508 kb on + strand, within HP15_3038 at 3184.568 kb on + strand, within HP15_3038 at 3184.643 kb on - strand, within HP15_3038 at 3184.643 kb on - strand, within HP15_3038 at 3184.760 kb on + strand, within HP15_3038 at 3184.868 kb on - strand, within HP15_3038 at 3184.931 kb on - strand, within HP15_3038
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.064 mg/ml remove 3,182,319 - HP15_3036 0.24 +0.3 3,182,367 + HP15_3036 0.29 -1.0 3,182,372 + HP15_3036 0.29 +1.3 3,182,382 + HP15_3036 0.30 +0.1 3,182,428 - HP15_3036 0.34 -0.0 3,182,447 - HP15_3036 0.36 +1.5 3,182,447 - HP15_3036 0.36 -0.5 3,182,491 + HP15_3036 0.40 +0.1 3,182,499 - HP15_3036 0.41 +0.0 3,182,504 + HP15_3036 0.41 +0.7 3,182,574 + HP15_3036 0.48 +0.3 3,182,574 + HP15_3036 0.48 -0.6 3,182,582 - HP15_3036 0.48 -0.2 3,182,620 - HP15_3036 0.52 +0.2 3,182,668 + HP15_3036 0.56 -0.2 3,182,676 - HP15_3036 0.57 -0.3 3,182,676 - HP15_3036 0.57 +2.0 3,182,688 + HP15_3036 0.58 +2.2 3,182,696 - HP15_3036 0.59 +0.7 3,182,714 + HP15_3036 0.61 +1.7 3,182,749 + HP15_3036 0.64 +0.6 3,182,789 - HP15_3036 0.67 +0.6 3,182,801 + HP15_3036 0.68 +0.4 3,182,864 + HP15_3036 0.74 +0.6 3,182,907 - HP15_3036 0.78 -1.0 3,182,907 - HP15_3036 0.78 +0.3 3,183,046 - +1.0 3,183,362 - HP15_3037 0.10 +2.3 3,183,413 - HP15_3037 0.18 -0.7 3,183,695 - HP15_3037 0.63 +0.1 3,183,803 - HP15_3037 0.80 +0.1 3,183,813 + HP15_3037 0.81 +0.7 3,183,813 + HP15_3037 0.81 +0.1 3,183,813 + HP15_3037 0.81 +0.2 3,183,831 - HP15_3037 0.84 +0.9 3,183,857 + HP15_3037 0.88 +0.5 3,183,865 - HP15_3037 0.89 +0.5 3,183,906 - +0.0 3,184,014 - +0.7 3,184,071 - -2.1 3,184,114 - HP15_3038 0.12 -0.9 3,184,131 - HP15_3038 0.13 -3.3 3,184,179 + HP15_3038 0.17 -0.3 3,184,283 + HP15_3038 0.24 -0.5 3,184,286 - HP15_3038 0.25 +0.7 3,184,340 + HP15_3038 0.29 -0.6 3,184,368 + HP15_3038 0.31 +0.1 3,184,376 - HP15_3038 0.31 +1.3 3,184,508 + HP15_3038 0.41 -1.0 3,184,568 + HP15_3038 0.46 -1.4 3,184,643 - HP15_3038 0.51 -1.4 3,184,643 - HP15_3038 0.51 +0.1 3,184,760 + HP15_3038 0.60 +0.7 3,184,868 - HP15_3038 0.68 +0.7 3,184,931 - HP15_3038 0.73 -0.9
Or see this region's nucleotide sequence