Strain Fitness in Marinobacter adhaerens HP15 around HP15_2830

Experiment: m.b. D-Cycloserine 0.064 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_2828 and HP15_2829 are separated by 16 nucleotidesHP15_2829 and HP15_2830 are separated by 58 nucleotidesHP15_2830 and HP15_2831 are separated by 177 nucleotidesHP15_2831 and HP15_2832 are separated by 95 nucleotides HP15_2828: HP15_2828 - phosphoesterase, at 2,972,498 to 2,972,953 _2828 HP15_2829: HP15_2829 - peptidylprolyl isomerase, FKBP-type, at 2,972,970 to 2,973,467 _2829 HP15_2830: HP15_2830 - transcriptional regulator, XRE family, at 2,973,526 to 2,974,308 _2830 HP15_2831: HP15_2831 - conserved hypothetical protein, membrane, at 2,974,486 to 2,974,866 _2831 HP15_2832: HP15_2832 - DNA damage response helicase (yejH or radD) (from data), at 2,974,962 to 2,976,719 _2832 Position (kb) 2973 2974 2975Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2972.538 kb on + strandat 2972.643 kb on + strand, within HP15_2828at 2972.678 kb on + strand, within HP15_2828at 2972.725 kb on + strand, within HP15_2828at 2972.764 kb on - strand, within HP15_2828at 2972.878 kb on + strand, within HP15_2828at 2972.973 kb on + strandat 2973.008 kb on + strandat 2973.068 kb on - strand, within HP15_2829at 2973.136 kb on - strand, within HP15_2829at 2973.154 kb on + strand, within HP15_2829at 2973.154 kb on + strand, within HP15_2829at 2973.162 kb on - strand, within HP15_2829at 2973.237 kb on - strand, within HP15_2829at 2973.275 kb on + strand, within HP15_2829at 2973.301 kb on - strand, within HP15_2829at 2973.322 kb on + strand, within HP15_2829at 2973.401 kb on + strand, within HP15_2829at 2973.449 kb on + strandat 2973.457 kb on - strandat 2973.467 kb on + strandat 2973.530 kb on - strandat 2973.530 kb on - strandat 2973.596 kb on + strandat 2973.604 kb on - strandat 2973.740 kb on + strand, within HP15_2830at 2973.748 kb on - strand, within HP15_2830at 2973.855 kb on + strand, within HP15_2830at 2973.861 kb on - strand, within HP15_2830at 2973.862 kb on - strand, within HP15_2830at 2974.027 kb on + strand, within HP15_2830at 2974.082 kb on + strand, within HP15_2830at 2974.082 kb on + strand, within HP15_2830at 2974.082 kb on + strand, within HP15_2830at 2974.082 kb on + strand, within HP15_2830at 2974.090 kb on - strand, within HP15_2830at 2974.090 kb on - strand, within HP15_2830at 2974.090 kb on - strand, within HP15_2830at 2974.117 kb on - strand, within HP15_2830at 2974.132 kb on - strand, within HP15_2830at 2974.213 kb on - strand, within HP15_2830at 2974.287 kb on + strandat 2974.403 kb on + strandat 2974.426 kb on - strandat 2974.443 kb on + strandat 2974.564 kb on + strand, within HP15_2831at 2974.598 kb on + strand, within HP15_2831at 2974.623 kb on + strand, within HP15_2831at 2974.629 kb on - strand, within HP15_2831at 2974.663 kb on - strand, within HP15_2831at 2974.723 kb on + strand, within HP15_2831at 2974.745 kb on - strand, within HP15_2831at 2974.762 kb on + strand, within HP15_2831at 2974.762 kb on + strand, within HP15_2831at 2974.770 kb on - strand, within HP15_2831at 2974.770 kb on - strand, within HP15_2831at 2974.770 kb on - strand, within HP15_2831at 2974.814 kb on - strand, within HP15_2831at 2974.849 kb on - strandat 2975.018 kb on + strandat 2975.121 kb on - strandat 2975.277 kb on + strand, within HP15_2832

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.064 mg/ml
remove
2,972,538 + -1.3
2,972,643 + HP15_2828 0.32 +1.7
2,972,678 + HP15_2828 0.39 +1.8
2,972,725 + HP15_2828 0.50 -0.2
2,972,764 - HP15_2828 0.58 +0.5
2,972,878 + HP15_2828 0.83 -0.4
2,972,973 + -0.5
2,973,008 + -1.0
2,973,068 - HP15_2829 0.20 +0.4
2,973,136 - HP15_2829 0.33 -0.1
2,973,154 + HP15_2829 0.37 +0.4
2,973,154 + HP15_2829 0.37 -0.6
2,973,162 - HP15_2829 0.39 -0.5
2,973,237 - HP15_2829 0.54 -0.3
2,973,275 + HP15_2829 0.61 -0.3
2,973,301 - HP15_2829 0.66 -0.6
2,973,322 + HP15_2829 0.71 +1.7
2,973,401 + HP15_2829 0.87 -0.7
2,973,449 + +1.5
2,973,457 - +1.6
2,973,467 + -0.7
2,973,530 - +0.4
2,973,530 - -0.4
2,973,596 + -2.3
2,973,604 - +0.0
2,973,740 + HP15_2830 0.27 -2.1
2,973,748 - HP15_2830 0.28 -0.3
2,973,855 + HP15_2830 0.42 -1.1
2,973,861 - HP15_2830 0.43 +0.1
2,973,862 - HP15_2830 0.43 +0.8
2,974,027 + HP15_2830 0.64 -0.3
2,974,082 + HP15_2830 0.71 +0.4
2,974,082 + HP15_2830 0.71 -0.2
2,974,082 + HP15_2830 0.71 -0.4
2,974,082 + HP15_2830 0.71 +0.7
2,974,090 - HP15_2830 0.72 -0.9
2,974,090 - HP15_2830 0.72 -0.9
2,974,090 - HP15_2830 0.72 -0.9
2,974,117 - HP15_2830 0.75 -1.0
2,974,132 - HP15_2830 0.77 -1.0
2,974,213 - HP15_2830 0.88 -3.6
2,974,287 + +0.7
2,974,403 + +0.1
2,974,426 - -0.5
2,974,443 + +0.3
2,974,564 + HP15_2831 0.20 -0.5
2,974,598 + HP15_2831 0.29 -0.6
2,974,623 + HP15_2831 0.36 +1.1
2,974,629 - HP15_2831 0.38 +0.1
2,974,663 - HP15_2831 0.46 +0.5
2,974,723 + HP15_2831 0.62 -0.3
2,974,745 - HP15_2831 0.68 -0.1
2,974,762 + HP15_2831 0.72 +1.4
2,974,762 + HP15_2831 0.72 +0.4
2,974,770 - HP15_2831 0.75 +1.7
2,974,770 - HP15_2831 0.75 +0.1
2,974,770 - HP15_2831 0.75 +2.9
2,974,814 - HP15_2831 0.86 -1.3
2,974,849 - +0.1
2,975,018 + -1.3
2,975,121 - +1.2
2,975,277 + HP15_2832 0.18 +0.0

Or see this region's nucleotide sequence