Experiment: m.b. D-Cycloserine 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2826 and HP15_2827 are separated by 198 nucleotides HP15_2827 and HP15_2828 are separated by 89 nucleotides HP15_2828 and HP15_2829 are separated by 16 nucleotides
HP15_2826: HP15_2826 - conserved hypothetical protein, at 2,970,306 to 2,971,220
_2826
HP15_2827: HP15_2827 - oxidoreductase, aldo/keto reductase family, at 2,971,419 to 2,972,408
_2827
HP15_2828: HP15_2828 - phosphoesterase, at 2,972,498 to 2,972,953
_2828
HP15_2829: HP15_2829 - peptidylprolyl isomerase, FKBP-type, at 2,972,970 to 2,973,467
_2829
Position (kb)
2971
2972
2973 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2970.472 kb on + strand, within HP15_2826 at 2970.592 kb on + strand, within HP15_2826 at 2970.597 kb on + strand, within HP15_2826 at 2970.605 kb on - strand, within HP15_2826 at 2970.610 kb on - strand, within HP15_2826 at 2970.703 kb on + strand, within HP15_2826 at 2970.736 kb on - strand, within HP15_2826 at 2970.980 kb on - strand, within HP15_2826 at 2970.980 kb on - strand, within HP15_2826 at 2970.980 kb on - strand, within HP15_2826 at 2970.992 kb on - strand, within HP15_2826 at 2971.082 kb on + strand, within HP15_2826 at 2971.095 kb on - strand, within HP15_2826 at 2971.313 kb on + strand at 2971.361 kb on - strand at 2971.361 kb on - strand at 2971.379 kb on + strand at 2971.435 kb on + strand at 2971.442 kb on + strand at 2971.569 kb on + strand, within HP15_2827 at 2971.574 kb on + strand, within HP15_2827 at 2971.627 kb on + strand, within HP15_2827 at 2971.710 kb on - strand, within HP15_2827 at 2971.730 kb on + strand, within HP15_2827 at 2971.738 kb on + strand, within HP15_2827 at 2971.850 kb on - strand, within HP15_2827 at 2971.898 kb on - strand, within HP15_2827 at 2972.016 kb on + strand, within HP15_2827 at 2972.016 kb on + strand, within HP15_2827 at 2972.029 kb on - strand, within HP15_2827 at 2972.034 kb on - strand, within HP15_2827 at 2972.119 kb on + strand, within HP15_2827 at 2972.127 kb on - strand, within HP15_2827 at 2972.380 kb on - strand at 2972.432 kb on + strand at 2972.432 kb on + strand at 2972.538 kb on + strand at 2972.643 kb on + strand, within HP15_2828 at 2972.678 kb on + strand, within HP15_2828 at 2972.725 kb on + strand, within HP15_2828 at 2972.764 kb on - strand, within HP15_2828 at 2972.878 kb on + strand, within HP15_2828 at 2972.973 kb on + strand at 2973.008 kb on + strand at 2973.068 kb on - strand, within HP15_2829 at 2973.136 kb on - strand, within HP15_2829 at 2973.154 kb on + strand, within HP15_2829 at 2973.154 kb on + strand, within HP15_2829 at 2973.162 kb on - strand, within HP15_2829 at 2973.237 kb on - strand, within HP15_2829 at 2973.275 kb on + strand, within HP15_2829 at 2973.301 kb on - strand, within HP15_2829 at 2973.322 kb on + strand, within HP15_2829 at 2973.401 kb on + strand, within HP15_2829
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.064 mg/ml remove 2,970,472 + HP15_2826 0.18 -0.3 2,970,592 + HP15_2826 0.31 +0.0 2,970,597 + HP15_2826 0.32 +0.0 2,970,605 - HP15_2826 0.33 +0.4 2,970,610 - HP15_2826 0.33 +1.7 2,970,703 + HP15_2826 0.43 +0.6 2,970,736 - HP15_2826 0.47 -0.4 2,970,980 - HP15_2826 0.74 +0.4 2,970,980 - HP15_2826 0.74 -0.1 2,970,980 - HP15_2826 0.74 -2.1 2,970,992 - HP15_2826 0.75 -0.3 2,971,082 + HP15_2826 0.85 -1.1 2,971,095 - HP15_2826 0.86 +0.9 2,971,313 + +1.6 2,971,361 - -0.8 2,971,361 - -0.2 2,971,379 + -0.9 2,971,435 + +1.6 2,971,442 + -0.3 2,971,569 + HP15_2827 0.15 +0.3 2,971,574 + HP15_2827 0.16 +0.7 2,971,627 + HP15_2827 0.21 +0.4 2,971,710 - HP15_2827 0.29 +0.1 2,971,730 + HP15_2827 0.31 -0.7 2,971,738 + HP15_2827 0.32 -1.1 2,971,850 - HP15_2827 0.44 +0.3 2,971,898 - HP15_2827 0.48 -0.3 2,972,016 + HP15_2827 0.60 +0.5 2,972,016 + HP15_2827 0.60 +0.7 2,972,029 - HP15_2827 0.62 -1.8 2,972,034 - HP15_2827 0.62 +0.5 2,972,119 + HP15_2827 0.71 +0.3 2,972,127 - HP15_2827 0.72 +0.3 2,972,380 - -0.0 2,972,432 + +0.1 2,972,432 + -0.1 2,972,538 + -1.3 2,972,643 + HP15_2828 0.32 +1.7 2,972,678 + HP15_2828 0.39 +1.8 2,972,725 + HP15_2828 0.50 -0.2 2,972,764 - HP15_2828 0.58 +0.5 2,972,878 + HP15_2828 0.83 -0.4 2,972,973 + -0.5 2,973,008 + -1.0 2,973,068 - HP15_2829 0.20 +0.4 2,973,136 - HP15_2829 0.33 -0.1 2,973,154 + HP15_2829 0.37 +0.4 2,973,154 + HP15_2829 0.37 -0.6 2,973,162 - HP15_2829 0.39 -0.5 2,973,237 - HP15_2829 0.54 -0.3 2,973,275 + HP15_2829 0.61 -0.3 2,973,301 - HP15_2829 0.66 -0.6 2,973,322 + HP15_2829 0.71 +1.7 2,973,401 + HP15_2829 0.87 -0.7
Or see this region's nucleotide sequence