Strain Fitness in Marinobacter adhaerens HP15 around HP15_2568

Experiment: m.b. D-Cycloserine 0.064 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2567 and HP15_2568 are separated by 83 nucleotidesHP15_2568 and HP15_2569 are separated by 13 nucleotidesHP15_2569 and HP15_2570 are separated by 146 nucleotides HP15_2567: HP15_2567 - uncharacterized conserved protein UCP028101, at 2,713,978 to 2,715,072 _2567 HP15_2568: HP15_2568 - permease of the major facilitator superfamily protein, at 2,715,156 to 2,716,469 _2568 HP15_2569: HP15_2569 - conserved hypothetical protein, membrane, at 2,716,483 to 2,716,770 _2569 HP15_2570: HP15_2570 - methyl-accepting chemotaxis sensory transducer, at 2,716,917 to 2,718,521 _2570 Position (kb) 2715 2716 2717Strain fitness (log2 ratio) -2 -1 0 1 2at 2714.186 kb on + strand, within HP15_2567at 2714.194 kb on - strand, within HP15_2567at 2714.246 kb on - strand, within HP15_2567at 2714.271 kb on + strand, within HP15_2567at 2714.271 kb on + strand, within HP15_2567at 2714.271 kb on + strand, within HP15_2567at 2714.271 kb on + strand, within HP15_2567at 2714.279 kb on - strand, within HP15_2567at 2714.279 kb on - strand, within HP15_2567at 2714.345 kb on - strand, within HP15_2567at 2714.476 kb on - strand, within HP15_2567at 2714.581 kb on + strand, within HP15_2567at 2714.787 kb on + strand, within HP15_2567at 2714.795 kb on - strand, within HP15_2567at 2714.795 kb on - strand, within HP15_2567at 2714.996 kb on - strandat 2715.031 kb on + strandat 2715.154 kb on - strandat 2715.292 kb on + strand, within HP15_2568at 2715.318 kb on + strand, within HP15_2568at 2715.377 kb on - strand, within HP15_2568at 2715.396 kb on - strand, within HP15_2568at 2715.452 kb on + strand, within HP15_2568at 2715.531 kb on + strand, within HP15_2568at 2715.656 kb on - strand, within HP15_2568at 2715.746 kb on + strand, within HP15_2568at 2715.758 kb on + strand, within HP15_2568at 2715.758 kb on + strand, within HP15_2568at 2715.825 kb on + strand, within HP15_2568at 2715.833 kb on - strand, within HP15_2568at 2715.896 kb on + strand, within HP15_2568at 2715.952 kb on + strand, within HP15_2568at 2715.957 kb on + strand, within HP15_2568at 2715.957 kb on + strand, within HP15_2568at 2716.017 kb on - strand, within HP15_2568at 2716.041 kb on + strand, within HP15_2568at 2716.049 kb on - strand, within HP15_2568at 2716.090 kb on + strand, within HP15_2568at 2716.127 kb on + strand, within HP15_2568at 2716.156 kb on - strand, within HP15_2568at 2716.179 kb on + strand, within HP15_2568at 2716.246 kb on + strand, within HP15_2568at 2716.438 kb on - strandat 2716.463 kb on + strandat 2716.623 kb on - strand, within HP15_2569at 2716.623 kb on - strand, within HP15_2569at 2716.633 kb on - strand, within HP15_2569at 2716.723 kb on + strand, within HP15_2569at 2716.749 kb on - strandat 2716.768 kb on - strandat 2716.879 kb on + strandat 2717.103 kb on - strand, within HP15_2570at 2717.395 kb on - strand, within HP15_2570at 2717.398 kb on + strand, within HP15_2570

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.064 mg/ml
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2,714,186 + HP15_2567 0.19 +1.1
2,714,194 - HP15_2567 0.20 -2.1
2,714,246 - HP15_2567 0.24 -0.1
2,714,271 + HP15_2567 0.27 -0.3
2,714,271 + HP15_2567 0.27 +0.3
2,714,271 + HP15_2567 0.27 +0.0
2,714,271 + HP15_2567 0.27 +0.7
2,714,279 - HP15_2567 0.27 +2.3
2,714,279 - HP15_2567 0.27 -0.2
2,714,345 - HP15_2567 0.34 -1.1
2,714,476 - HP15_2567 0.45 +0.3
2,714,581 + HP15_2567 0.55 -0.5
2,714,787 + HP15_2567 0.74 -0.5
2,714,795 - HP15_2567 0.75 +0.7
2,714,795 - HP15_2567 0.75 -0.8
2,714,996 - +0.6
2,715,031 + +0.0
2,715,154 - +0.5
2,715,292 + HP15_2568 0.10 +0.7
2,715,318 + HP15_2568 0.12 +0.5
2,715,377 - HP15_2568 0.17 -0.3
2,715,396 - HP15_2568 0.18 +0.7
2,715,452 + HP15_2568 0.23 -0.9
2,715,531 + HP15_2568 0.29 -1.6
2,715,656 - HP15_2568 0.38 -0.3
2,715,746 + HP15_2568 0.45 -0.3
2,715,758 + HP15_2568 0.46 -0.8
2,715,758 + HP15_2568 0.46 -0.7
2,715,825 + HP15_2568 0.51 -1.8
2,715,833 - HP15_2568 0.52 -1.0
2,715,896 + HP15_2568 0.56 +0.7
2,715,952 + HP15_2568 0.61 -1.9
2,715,957 + HP15_2568 0.61 +2.3
2,715,957 + HP15_2568 0.61 -1.8
2,716,017 - HP15_2568 0.66 +0.7
2,716,041 + HP15_2568 0.67 -0.3
2,716,049 - HP15_2568 0.68 -0.6
2,716,090 + HP15_2568 0.71 -0.9
2,716,127 + HP15_2568 0.74 -0.9
2,716,156 - HP15_2568 0.76 -0.2
2,716,179 + HP15_2568 0.78 +0.7
2,716,246 + HP15_2568 0.83 +0.6
2,716,438 - -0.9
2,716,463 + +0.2
2,716,623 - HP15_2569 0.49 +1.0
2,716,623 - HP15_2569 0.49 -0.9
2,716,633 - HP15_2569 0.52 -0.7
2,716,723 + HP15_2569 0.83 -0.3
2,716,749 - -0.2
2,716,768 - +0.1
2,716,879 + +1.1
2,717,103 - HP15_2570 0.12 +0.7
2,717,395 - HP15_2570 0.30 -1.1
2,717,398 + HP15_2570 0.30 -0.9

Or see this region's nucleotide sequence