Experiment: m.b. D-Cycloserine 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_240 and HP15_241 are separated by 92 nucleotides HP15_241 and HP15_242 are separated by 29 nucleotides
HP15_240: HP15_240 - porphobilinogen deaminase, at 225,468 to 226,409
_240
HP15_241: HP15_241 - alginate biosynthesis regulatory protein AlgR-like protein, at 226,502 to 227,251
_241
HP15_242: HP15_242 - histidine kinase internal region, at 227,281 to 228,321
_242
Position (kb) 226
227
228 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 226.527 kb on - strand at 226.605 kb on - strand, within HP15_241 at 226.630 kb on + strand, within HP15_241 at 226.655 kb on + strand, within HP15_241 at 226.665 kb on + strand, within HP15_241 at 226.673 kb on - strand, within HP15_241 at 226.673 kb on - strand, within HP15_241 at 226.673 kb on - strand, within HP15_241 at 226.775 kb on + strand, within HP15_241 at 226.814 kb on - strand, within HP15_241 at 226.849 kb on - strand, within HP15_241 at 226.849 kb on - strand, within HP15_241 at 226.890 kb on + strand, within HP15_241 at 226.902 kb on + strand, within HP15_241 at 226.909 kb on - strand, within HP15_241 at 226.935 kb on + strand, within HP15_241 at 226.945 kb on + strand, within HP15_241 at 227.247 kb on + strand at 227.271 kb on + strand at 227.271 kb on + strand at 227.362 kb on + strand at 227.421 kb on + strand, within HP15_242 at 227.424 kb on - strand, within HP15_242 at 227.484 kb on + strand, within HP15_242 at 227.511 kb on - strand, within HP15_242 at 227.659 kb on + strand, within HP15_242 at 227.678 kb on + strand, within HP15_242 at 227.702 kb on + strand, within HP15_242 at 227.757 kb on - strand, within HP15_242 at 227.857 kb on + strand, within HP15_242 at 227.857 kb on + strand, within HP15_242 at 227.930 kb on - strand, within HP15_242 at 228.018 kb on - strand, within HP15_242 at 228.044 kb on - strand, within HP15_242 at 228.044 kb on - strand, within HP15_242 at 228.060 kb on + strand, within HP15_242 at 228.067 kb on + strand, within HP15_242 at 228.130 kb on + strand, within HP15_242 at 228.143 kb on - strand, within HP15_242 at 228.145 kb on + strand, within HP15_242 at 228.145 kb on + strand, within HP15_242 at 228.145 kb on + strand, within HP15_242 at 228.150 kb on + strand, within HP15_242 at 228.152 kb on + strand, within HP15_242 at 228.152 kb on + strand, within HP15_242 at 228.153 kb on - strand, within HP15_242 at 228.153 kb on - strand, within HP15_242 at 228.153 kb on - strand, within HP15_242 at 228.153 kb on - strand, within HP15_242 at 228.153 kb on - strand, within HP15_242 at 228.246 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.064 mg/ml remove 226,527 - +0.7 226,605 - HP15_241 0.14 -0.3 226,630 + HP15_241 0.17 +1.0 226,655 + HP15_241 0.20 +0.3 226,665 + HP15_241 0.22 +0.7 226,673 - HP15_241 0.23 -0.3 226,673 - HP15_241 0.23 +0.5 226,673 - HP15_241 0.23 +0.3 226,775 + HP15_241 0.36 +0.3 226,814 - HP15_241 0.42 -0.7 226,849 - HP15_241 0.46 -0.7 226,849 - HP15_241 0.46 +0.1 226,890 + HP15_241 0.52 +0.2 226,902 + HP15_241 0.53 -1.3 226,909 - HP15_241 0.54 -0.5 226,935 + HP15_241 0.58 +0.7 226,945 + HP15_241 0.59 +0.2 227,247 + +0.4 227,271 + -0.8 227,271 + +0.2 227,362 + -0.5 227,421 + HP15_242 0.13 +1.0 227,424 - HP15_242 0.14 -1.2 227,484 + HP15_242 0.20 +4.6 227,511 - HP15_242 0.22 +1.0 227,659 + HP15_242 0.36 +0.2 227,678 + HP15_242 0.38 +0.6 227,702 + HP15_242 0.40 +0.7 227,757 - HP15_242 0.46 -0.3 227,857 + HP15_242 0.55 -2.4 227,857 + HP15_242 0.55 -0.8 227,930 - HP15_242 0.62 +0.4 228,018 - HP15_242 0.71 +1.1 228,044 - HP15_242 0.73 +0.5 228,044 - HP15_242 0.73 -0.3 228,060 + HP15_242 0.75 +0.7 228,067 + HP15_242 0.76 +0.0 228,130 + HP15_242 0.82 +0.7 228,143 - HP15_242 0.83 +1.1 228,145 + HP15_242 0.83 +0.2 228,145 + HP15_242 0.83 +0.4 228,145 + HP15_242 0.83 -0.3 228,150 + HP15_242 0.83 +0.4 228,152 + HP15_242 0.84 +0.7 228,152 + HP15_242 0.84 -0.0 228,153 - HP15_242 0.84 +0.7 228,153 - HP15_242 0.84 +1.1 228,153 - HP15_242 0.84 +2.1 228,153 - HP15_242 0.84 -0.2 228,153 - HP15_242 0.84 +0.6 228,246 + +0.4
Or see this region's nucleotide sequence