Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c24270

Experiment: m.b. Vanillin 1.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c24260 and PGA1_c24270 are separated by 175 nucleotidesPGA1_c24270 and PGA1_c24280 are separated by 393 nucleotides PGA1_c24260: PGA1_c24260 - cell cycle regulator GcrA, at 2,531,797 to 2,532,405 _c24260 PGA1_c24270: PGA1_c24270 - Uncharacterized conserved protein, at 2,532,581 to 2,533,099 _c24270 PGA1_c24280: PGA1_c24280 - uncharacterized GST-like protein YghU, at 2,533,493 to 2,534,374 _c24280 Position (kb) 2532 2533 2534Strain fitness (log2 ratio) -3 -2 -1 0 1at 2531.602 kb on - strandat 2531.635 kb on - strandat 2531.646 kb on + strandat 2531.673 kb on + strandat 2532.406 kb on + strandat 2532.439 kb on + strandat 2532.440 kb on - strandat 2532.494 kb on + strandat 2532.494 kb on + strandat 2532.494 kb on + strandat 2532.497 kb on - strandat 2532.550 kb on + strandat 2532.562 kb on + strandat 2532.579 kb on + strandat 2532.579 kb on + strandat 2532.587 kb on - strandat 2532.587 kb on - strandat 2532.589 kb on + strandat 2532.657 kb on + strand, within PGA1_c24270at 2532.657 kb on + strand, within PGA1_c24270at 2532.665 kb on - strand, within PGA1_c24270at 2532.702 kb on - strand, within PGA1_c24270at 2532.705 kb on - strand, within PGA1_c24270at 2532.740 kb on - strand, within PGA1_c24270at 2532.763 kb on + strand, within PGA1_c24270at 2532.771 kb on - strand, within PGA1_c24270at 2532.771 kb on - strand, within PGA1_c24270at 2532.771 kb on - strand, within PGA1_c24270at 2532.771 kb on - strand, within PGA1_c24270at 2532.771 kb on - strand, within PGA1_c24270at 2532.771 kb on - strand, within PGA1_c24270at 2532.773 kb on + strand, within PGA1_c24270at 2532.781 kb on - strand, within PGA1_c24270at 2532.781 kb on - strand, within PGA1_c24270at 2532.781 kb on - strand, within PGA1_c24270at 2532.953 kb on + strand, within PGA1_c24270at 2532.998 kb on + strand, within PGA1_c24270at 2532.999 kb on - strand, within PGA1_c24270at 2533.006 kb on + strand, within PGA1_c24270at 2533.012 kb on + strand, within PGA1_c24270at 2533.054 kb on + strandat 2533.130 kb on - strandat 2533.240 kb on + strandat 2533.245 kb on + strandat 2533.270 kb on + strandat 2533.309 kb on + strandat 2533.318 kb on + strandat 2533.366 kb on + strandat 2533.366 kb on - strandat 2533.513 kb on - strandat 2533.540 kb on + strandat 2533.548 kb on - strandat 2533.761 kb on - strand, within PGA1_c24280at 2533.782 kb on - strand, within PGA1_c24280at 2533.905 kb on - strand, within PGA1_c24280at 2533.927 kb on - strand, within PGA1_c24280at 2533.950 kb on - strand, within PGA1_c24280at 2533.953 kb on + strand, within PGA1_c24280at 2534.057 kb on - strand, within PGA1_c24280

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Vanillin 1.25 mM
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2,531,602 - -1.6
2,531,635 - -1.4
2,531,646 + -2.6
2,531,673 + +0.5
2,532,406 + +0.9
2,532,439 + -1.1
2,532,440 - -0.9
2,532,494 + -1.9
2,532,494 + +0.1
2,532,494 + -0.6
2,532,497 - -0.4
2,532,550 + -0.1
2,532,562 + -1.1
2,532,579 + -1.4
2,532,579 + -1.6
2,532,587 - +0.4
2,532,587 - -0.1
2,532,589 + -0.6
2,532,657 + PGA1_c24270 0.15 -2.4
2,532,657 + PGA1_c24270 0.15 -0.5
2,532,665 - PGA1_c24270 0.16 -0.5
2,532,702 - PGA1_c24270 0.23 +0.7
2,532,705 - PGA1_c24270 0.24 -0.0
2,532,740 - PGA1_c24270 0.31 -1.4
2,532,763 + PGA1_c24270 0.35 -2.5
2,532,771 - PGA1_c24270 0.37 -1.4
2,532,771 - PGA1_c24270 0.37 +0.1
2,532,771 - PGA1_c24270 0.37 -0.1
2,532,771 - PGA1_c24270 0.37 -2.1
2,532,771 - PGA1_c24270 0.37 -0.1
2,532,771 - PGA1_c24270 0.37 -3.6
2,532,773 + PGA1_c24270 0.37 -0.6
2,532,781 - PGA1_c24270 0.39 -0.9
2,532,781 - PGA1_c24270 0.39 -2.1
2,532,781 - PGA1_c24270 0.39 -1.4
2,532,953 + PGA1_c24270 0.72 -1.2
2,532,998 + PGA1_c24270 0.80 -1.0
2,532,999 - PGA1_c24270 0.81 -0.6
2,533,006 + PGA1_c24270 0.82 -0.1
2,533,012 + PGA1_c24270 0.83 +0.2
2,533,054 + -2.1
2,533,130 - -2.2
2,533,240 + -1.0
2,533,245 + -0.3
2,533,270 + -0.6
2,533,309 + +0.2
2,533,318 + +0.2
2,533,366 + +0.0
2,533,366 - +0.8
2,533,513 - +0.9
2,533,540 + -2.3
2,533,548 - -0.4
2,533,761 - PGA1_c24280 0.30 -0.4
2,533,782 - PGA1_c24280 0.33 +0.4
2,533,905 - PGA1_c24280 0.47 -2.3
2,533,927 - PGA1_c24280 0.49 -2.2
2,533,950 - PGA1_c24280 0.52 -0.6
2,533,953 + PGA1_c24280 0.52 +0.1
2,534,057 - PGA1_c24280 0.64 -0.1

Or see this region's nucleotide sequence