Experiment: m.b. Vanillin 1.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c02380 and PGA1_c02390 are separated by 89 nucleotides PGA1_c02390 and PGA1_c02400 are separated by 79 nucleotides PGA1_c02400 and PGA1_c02420 are separated by 457 nucleotides
PGA1_c02380: PGA1_c02380 - hypothetical protein, at 215,183 to 216,454
_c02380
PGA1_c02390: PGA1_c02390 - transcriptional regulator, MerR family, at 216,544 to 216,948
_c02390
PGA1_c02400: PGA1_c02400 - putative major facilitator superfamily transporter, at 217,028 to 218,269
_c02400
PGA1_c02420: PGA1_c02420 - V8-like Glu-specific endopeptidase, at 218,727 to 219,440
_c02420
Position (kb) 217
218
219 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 216.057 kb on + strand, within PGA1_c02380 at 216.075 kb on - strand, within PGA1_c02380 at 216.075 kb on - strand, within PGA1_c02380 at 216.090 kb on - strand, within PGA1_c02380 at 216.104 kb on + strand, within PGA1_c02380 at 216.152 kb on + strand, within PGA1_c02380 at 216.171 kb on + strand, within PGA1_c02380 at 216.171 kb on + strand, within PGA1_c02380 at 216.211 kb on + strand, within PGA1_c02380 at 216.316 kb on - strand, within PGA1_c02380 at 216.327 kb on - strand at 216.385 kb on + strand at 216.400 kb on + strand at 216.420 kb on + strand at 216.425 kb on - strand at 216.450 kb on + strand at 216.450 kb on + strand at 216.450 kb on + strand at 216.450 kb on + strand at 216.450 kb on + strand at 216.450 kb on + strand at 216.450 kb on + strand at 216.458 kb on - strand at 216.458 kb on - strand at 216.458 kb on - strand at 216.458 kb on - strand at 216.494 kb on + strand at 216.573 kb on - strand at 216.601 kb on + strand, within PGA1_c02390 at 216.610 kb on + strand, within PGA1_c02390 at 216.623 kb on - strand, within PGA1_c02390 at 216.623 kb on - strand, within PGA1_c02390 at 216.646 kb on + strand, within PGA1_c02390 at 216.665 kb on - strand, within PGA1_c02390 at 216.708 kb on - strand, within PGA1_c02390 at 216.779 kb on + strand, within PGA1_c02390 at 216.858 kb on - strand, within PGA1_c02390 at 216.879 kb on + strand, within PGA1_c02390 at 216.887 kb on - strand, within PGA1_c02390 at 216.924 kb on - strand at 216.926 kb on + strand at 216.934 kb on - strand at 216.990 kb on + strand at 216.990 kb on + strand at 216.990 kb on + strand at 216.990 kb on + strand at 216.990 kb on + strand at 216.990 kb on + strand at 216.990 kb on + strand at 216.990 kb on + strand at 216.992 kb on + strand at 216.998 kb on - strand at 216.998 kb on - strand at 216.998 kb on - strand at 217.000 kb on - strand at 217.000 kb on - strand at 217.039 kb on + strand at 217.039 kb on + strand at 217.039 kb on + strand at 217.047 kb on - strand at 217.047 kb on - strand at 217.047 kb on - strand at 217.234 kb on - strand, within PGA1_c02400 at 217.243 kb on + strand, within PGA1_c02400 at 217.306 kb on - strand, within PGA1_c02400 at 217.336 kb on - strand, within PGA1_c02400 at 217.404 kb on - strand, within PGA1_c02400 at 217.450 kb on + strand, within PGA1_c02400 at 217.450 kb on + strand, within PGA1_c02400 at 217.455 kb on + strand, within PGA1_c02400 at 217.455 kb on + strand, within PGA1_c02400 at 217.458 kb on - strand, within PGA1_c02400 at 217.463 kb on - strand, within PGA1_c02400 at 217.463 kb on - strand, within PGA1_c02400 at 217.463 kb on - strand, within PGA1_c02400 at 217.509 kb on + strand, within PGA1_c02400 at 217.656 kb on + strand, within PGA1_c02400 at 217.708 kb on + strand, within PGA1_c02400 at 217.723 kb on + strand, within PGA1_c02400 at 217.775 kb on - strand, within PGA1_c02400 at 217.797 kb on + strand, within PGA1_c02400 at 217.797 kb on + strand, within PGA1_c02400 at 217.805 kb on - strand, within PGA1_c02400 at 217.805 kb on - strand, within PGA1_c02400 at 217.805 kb on - strand, within PGA1_c02400 at 217.822 kb on + strand, within PGA1_c02400 at 217.864 kb on + strand, within PGA1_c02400 at 217.966 kb on + strand, within PGA1_c02400 at 218.013 kb on + strand, within PGA1_c02400 at 218.065 kb on + strand, within PGA1_c02400 at 218.072 kb on + strand, within PGA1_c02400 at 218.092 kb on + strand, within PGA1_c02400 at 218.249 kb on + strand at 218.249 kb on + strand at 218.249 kb on + strand at 218.249 kb on + strand at 218.257 kb on - strand at 218.267 kb on - strand at 218.267 kb on - strand at 218.282 kb on + strand at 218.283 kb on + strand at 218.283 kb on + strand at 218.283 kb on + strand at 218.290 kb on - strand at 218.291 kb on - strand at 218.291 kb on - strand at 218.291 kb on - strand at 218.293 kb on - strand at 218.327 kb on - strand at 218.367 kb on - strand at 218.439 kb on + strand at 218.440 kb on + strand at 218.447 kb on - strand at 218.454 kb on - strand at 218.454 kb on - strand at 218.454 kb on - strand at 218.479 kb on + strand at 218.479 kb on + strand at 218.479 kb on + strand at 218.479 kb on + strand at 218.479 kb on + strand at 218.479 kb on + strand at 218.479 kb on + strand at 218.479 kb on + strand at 218.479 kb on + strand at 218.479 kb on + strand at 218.485 kb on - strand at 218.487 kb on - strand at 218.487 kb on - strand at 218.551 kb on + strand at 218.571 kb on - strand at 218.596 kb on + strand at 218.596 kb on + strand at 218.596 kb on + strand at 218.596 kb on + strand at 218.597 kb on + strand at 218.604 kb on - strand at 218.615 kb on - strand at 218.649 kb on + strand at 218.650 kb on - strand at 218.673 kb on + strand at 218.686 kb on + strand at 218.686 kb on + strand at 218.686 kb on + strand at 218.686 kb on + strand at 218.686 kb on + strand at 218.686 kb on + strand at 218.686 kb on + strand at 218.686 kb on + strand at 218.686 kb on + strand at 218.686 kb on + strand at 218.686 kb on + strand at 218.686 kb on + strand at 218.686 kb on + strand at 218.691 kb on + strand at 218.691 kb on + strand at 218.694 kb on - strand at 218.694 kb on - strand at 218.694 kb on - strand at 218.694 kb on - strand at 218.698 kb on + strand at 218.698 kb on + strand at 218.699 kb on - strand at 218.699 kb on - strand at 218.706 kb on - strand at 218.706 kb on - strand at 218.707 kb on - strand at 218.774 kb on + strand at 218.774 kb on + strand at 218.774 kb on + strand at 218.774 kb on + strand at 218.774 kb on + strand at 218.782 kb on - strand at 218.782 kb on - strand at 218.812 kb on - strand, within PGA1_c02420 at 218.835 kb on + strand, within PGA1_c02420 at 218.872 kb on - strand, within PGA1_c02420 at 218.996 kb on + strand, within PGA1_c02420 at 219.115 kb on + strand, within PGA1_c02420 at 219.115 kb on - strand, within PGA1_c02420 at 219.156 kb on - strand, within PGA1_c02420 at 219.176 kb on + strand, within PGA1_c02420 at 219.177 kb on + strand, within PGA1_c02420 at 219.185 kb on - strand, within PGA1_c02420 at 219.185 kb on - strand, within PGA1_c02420 at 219.185 kb on - strand, within PGA1_c02420 at 219.232 kb on - strand, within PGA1_c02420 at 219.269 kb on - strand, within PGA1_c02420
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Vanillin 1.25 mM remove 216,057 + PGA1_c02380 0.69 -0.6 216,075 - PGA1_c02380 0.70 +0.5 216,075 - PGA1_c02380 0.70 +1.1 216,090 - PGA1_c02380 0.71 +1.8 216,104 + PGA1_c02380 0.72 +0.7 216,152 + PGA1_c02380 0.76 -0.0 216,171 + PGA1_c02380 0.78 -0.0 216,171 + PGA1_c02380 0.78 +0.8 216,211 + PGA1_c02380 0.81 -0.2 216,316 - PGA1_c02380 0.89 -0.4 216,327 - +0.6 216,385 + -0.6 216,400 + -0.1 216,420 + +0.1 216,425 - +1.9 216,450 + +0.3 216,450 + +0.7 216,450 + +0.6 216,450 + +0.2 216,450 + +0.4 216,450 + +0.5 216,450 + +0.4 216,458 - +0.6 216,458 - +1.6 216,458 - +0.2 216,458 - +1.6 216,494 + +1.4 216,573 - +0.2 216,601 + PGA1_c02390 0.14 +1.2 216,610 + PGA1_c02390 0.16 -1.0 216,623 - PGA1_c02390 0.20 -0.2 216,623 - PGA1_c02390 0.20 +1.8 216,646 + PGA1_c02390 0.25 +1.3 216,665 - PGA1_c02390 0.30 +1.1 216,708 - PGA1_c02390 0.40 -0.4 216,779 + PGA1_c02390 0.58 -1.6 216,858 - PGA1_c02390 0.78 +0.4 216,879 + PGA1_c02390 0.83 +0.4 216,887 - PGA1_c02390 0.85 -1.0 216,924 - +0.8 216,926 + +3.2 216,934 - -0.2 216,990 + -0.8 216,990 + -0.5 216,990 + +1.2 216,990 + +0.3 216,990 + -1.6 216,990 + +0.1 216,990 + -1.9 216,990 + -0.7 216,992 + -2.1 216,998 - +0.8 216,998 - +0.2 216,998 - -0.7 217,000 - +0.6 217,000 - +2.1 217,039 + -0.4 217,039 + +0.2 217,039 + +0.7 217,047 - +0.3 217,047 - +0.3 217,047 - -1.8 217,234 - PGA1_c02400 0.17 -1.6 217,243 + PGA1_c02400 0.17 +1.8 217,306 - PGA1_c02400 0.22 +0.0 217,336 - PGA1_c02400 0.25 -2.0 217,404 - PGA1_c02400 0.30 -2.1 217,450 + PGA1_c02400 0.34 -0.2 217,450 + PGA1_c02400 0.34 -1.4 217,455 + PGA1_c02400 0.34 -1.1 217,455 + PGA1_c02400 0.34 -1.7 217,458 - PGA1_c02400 0.35 +0.2 217,463 - PGA1_c02400 0.35 -0.5 217,463 - PGA1_c02400 0.35 +0.1 217,463 - PGA1_c02400 0.35 -0.2 217,509 + PGA1_c02400 0.39 +0.6 217,656 + PGA1_c02400 0.51 -0.8 217,708 + PGA1_c02400 0.55 -1.3 217,723 + PGA1_c02400 0.56 -0.6 217,775 - PGA1_c02400 0.60 -1.5 217,797 + PGA1_c02400 0.62 -0.9 217,797 + PGA1_c02400 0.62 +0.3 217,805 - PGA1_c02400 0.63 +2.2 217,805 - PGA1_c02400 0.63 -0.1 217,805 - PGA1_c02400 0.63 -0.1 217,822 + PGA1_c02400 0.64 +0.1 217,864 + PGA1_c02400 0.67 -1.6 217,966 + PGA1_c02400 0.76 -1.0 218,013 + PGA1_c02400 0.79 -2.2 218,065 + PGA1_c02400 0.83 +0.2 218,072 + PGA1_c02400 0.84 +0.6 218,092 + PGA1_c02400 0.86 +1.2 218,249 + +0.2 218,249 + +1.0 218,249 + -0.9 218,249 + +0.9 218,257 - -0.1 218,267 - +0.2 218,267 - -0.0 218,282 + -1.5 218,283 + +0.1 218,283 + +0.2 218,283 + -1.7 218,290 - -0.2 218,291 - +1.2 218,291 - +0.7 218,291 - +0.0 218,293 - +1.0 218,327 - -2.3 218,367 - +0.2 218,439 + +0.0 218,440 + -0.6 218,447 - +0.2 218,454 - +0.9 218,454 - +0.7 218,454 - +0.7 218,479 + -0.4 218,479 + -0.4 218,479 + +0.6 218,479 + +0.4 218,479 + -0.6 218,479 + +0.9 218,479 + -0.4 218,479 + +0.3 218,479 + +1.8 218,479 + +0.1 218,485 - -0.5 218,487 - +1.7 218,487 - -0.0 218,551 + -0.4 218,571 - -0.1 218,596 + -2.3 218,596 + -0.7 218,596 + -1.3 218,596 + -0.2 218,597 + +0.3 218,604 - +1.0 218,615 - +0.8 218,649 + -1.8 218,650 - -1.6 218,673 + +1.2 218,686 + +0.2 218,686 + -0.6 218,686 + -0.5 218,686 + -0.4 218,686 + -0.5 218,686 + -1.5 218,686 + -1.4 218,686 + -0.2 218,686 + +2.2 218,686 + +0.9 218,686 + -2.1 218,686 + +0.5 218,686 + -0.9 218,691 + +0.3 218,691 + -0.1 218,694 - -1.0 218,694 - -0.6 218,694 - +0.2 218,694 - +0.4 218,698 + -0.8 218,698 + +0.7 218,699 - +0.6 218,699 - +1.2 218,706 - -0.6 218,706 - +0.8 218,707 - +1.8 218,774 + +0.3 218,774 + +0.3 218,774 + -2.1 218,774 + -1.0 218,774 + -0.0 218,782 - +0.2 218,782 - -2.0 218,812 - PGA1_c02420 0.12 -1.5 218,835 + PGA1_c02420 0.15 +0.3 218,872 - PGA1_c02420 0.20 -0.6 218,996 + PGA1_c02420 0.38 +0.5 219,115 + PGA1_c02420 0.54 -0.6 219,115 - PGA1_c02420 0.54 +0.6 219,156 - PGA1_c02420 0.60 -0.0 219,176 + PGA1_c02420 0.63 -0.4 219,177 + PGA1_c02420 0.63 -0.4 219,185 - PGA1_c02420 0.64 +1.0 219,185 - PGA1_c02420 0.64 +0.3 219,185 - PGA1_c02420 0.64 -3.3 219,232 - PGA1_c02420 0.71 -2.3 219,269 - PGA1_c02420 0.76 +0.9
Or see this region's nucleotide sequence