Experiment: m.b. D-Cycloserine 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2181 and HP15_2182 are separated by 156 nucleotides HP15_2182 and HP15_2183 are separated by 238 nucleotides HP15_2183 and HP15_2184 are separated by 162 nucleotides
HP15_2181: HP15_2181 - PpiC-type peptidyl-prolyl cis-trans isomerase, at 2,292,902 to 2,294,746
_2181
HP15_2182: HP15_2182 - histone-like bacterial DNA-binding protein, at 2,294,903 to 2,295,175
_2182
HP15_2183: HP15_2183 - DNA-binding ATP-dependent protease La, at 2,295,414 to 2,297,831
_2183
HP15_2184: HP15_2184 - ATP-dependent Clp protease ATP-binding subunit ClpX, at 2,297,994 to 2,299,277
_2184
Position (kb)
2295
2296
2297
2298 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2294.613 kb on + strand at 2294.628 kb on - strand at 2294.722 kb on - strand at 2294.764 kb on + strand at 2294.764 kb on + strand at 2294.779 kb on + strand at 2294.819 kb on - strand at 2295.519 kb on - strand at 2295.524 kb on - strand at 2295.536 kb on - strand at 2295.654 kb on - strand at 2295.773 kb on - strand, within HP15_2183 at 2295.820 kb on - strand, within HP15_2183 at 2295.934 kb on + strand, within HP15_2183 at 2296.118 kb on + strand, within HP15_2183 at 2296.302 kb on - strand, within HP15_2183 at 2296.315 kb on + strand, within HP15_2183 at 2296.323 kb on - strand, within HP15_2183 at 2296.323 kb on - strand, within HP15_2183 at 2296.330 kb on + strand, within HP15_2183 at 2296.330 kb on + strand, within HP15_2183 at 2296.439 kb on - strand, within HP15_2183 at 2296.626 kb on - strand, within HP15_2183 at 2296.643 kb on - strand, within HP15_2183 at 2296.722 kb on + strand, within HP15_2183 at 2296.778 kb on + strand, within HP15_2183 at 2296.785 kb on + strand, within HP15_2183 at 2296.786 kb on + strand, within HP15_2183 at 2296.806 kb on + strand, within HP15_2183 at 2296.806 kb on + strand, within HP15_2183 at 2296.814 kb on - strand, within HP15_2183 at 2296.814 kb on - strand, within HP15_2183 at 2296.946 kb on + strand, within HP15_2183 at 2297.066 kb on + strand, within HP15_2183 at 2297.128 kb on - strand, within HP15_2183 at 2297.152 kb on - strand, within HP15_2183 at 2297.434 kb on + strand, within HP15_2183 at 2297.458 kb on + strand, within HP15_2183 at 2297.481 kb on + strand, within HP15_2183 at 2297.489 kb on - strand, within HP15_2183 at 2297.512 kb on + strand, within HP15_2183 at 2297.513 kb on - strand, within HP15_2183 at 2297.590 kb on - strand at 2297.811 kb on + strand at 2297.860 kb on + strand at 2298.018 kb on - strand at 2298.018 kb on - strand at 2298.550 kb on + strand, within HP15_2184
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.064 mg/ml remove 2,294,613 + +3.5 2,294,628 - -0.1 2,294,722 - +1.4 2,294,764 + +2.5 2,294,764 + +0.1 2,294,779 + +0.7 2,294,819 - +2.4 2,295,519 - -0.4 2,295,524 - -0.9 2,295,536 - -0.9 2,295,654 - -0.0 2,295,773 - HP15_2183 0.15 -0.2 2,295,820 - HP15_2183 0.17 -0.4 2,295,934 + HP15_2183 0.22 +0.7 2,296,118 + HP15_2183 0.29 +0.9 2,296,302 - HP15_2183 0.37 -0.3 2,296,315 + HP15_2183 0.37 -0.7 2,296,323 - HP15_2183 0.38 -0.4 2,296,323 - HP15_2183 0.38 +0.6 2,296,330 + HP15_2183 0.38 -1.0 2,296,330 + HP15_2183 0.38 +1.7 2,296,439 - HP15_2183 0.42 -1.2 2,296,626 - HP15_2183 0.50 -0.3 2,296,643 - HP15_2183 0.51 -0.7 2,296,722 + HP15_2183 0.54 -0.1 2,296,778 + HP15_2183 0.56 +0.6 2,296,785 + HP15_2183 0.57 -1.9 2,296,786 + HP15_2183 0.57 +1.8 2,296,806 + HP15_2183 0.58 +0.4 2,296,806 + HP15_2183 0.58 +0.1 2,296,814 - HP15_2183 0.58 +1.6 2,296,814 - HP15_2183 0.58 +1.3 2,296,946 + HP15_2183 0.63 -1.9 2,297,066 + HP15_2183 0.68 +0.2 2,297,128 - HP15_2183 0.71 +1.5 2,297,152 - HP15_2183 0.72 +0.1 2,297,434 + HP15_2183 0.84 +3.5 2,297,458 + HP15_2183 0.85 +0.9 2,297,481 + HP15_2183 0.85 -0.6 2,297,489 - HP15_2183 0.86 -0.3 2,297,512 + HP15_2183 0.87 +0.3 2,297,513 - HP15_2183 0.87 -1.0 2,297,590 - +1.3 2,297,811 + -0.4 2,297,860 + +1.8 2,298,018 - -0.2 2,298,018 - -1.6 2,298,550 + HP15_2184 0.43 -1.3
Or see this region's nucleotide sequence