Strain Fitness in Marinobacter adhaerens HP15 around HP15_2052

Experiment: m.b. D-Cycloserine 0.064 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2051 and HP15_2052 are separated by 192 nucleotidesHP15_2052 and HP15_2053 are separated by 103 nucleotides HP15_2051: HP15_2051 - inositol-5-monophosphate dehydrogenase, at 2,149,996 to 2,151,459 _2051 HP15_2052: HP15_2052 - exodeoxyribonuclease VII large subunit, at 2,151,652 to 2,153,040 _2052 HP15_2053: HP15_2053 - PrpE protein, at 2,153,144 to 2,155,018 _2053 Position (kb) 2151 2152 2153 2154Strain fitness (log2 ratio) -3 -2 -1 0 1at 2151.572 kb on + strandat 2151.654 kb on + strandat 2151.673 kb on - strandat 2151.673 kb on - strandat 2151.779 kb on - strandat 2151.785 kb on - strandat 2151.870 kb on + strand, within HP15_2052at 2151.878 kb on - strand, within HP15_2052at 2152.008 kb on - strand, within HP15_2052at 2152.069 kb on - strand, within HP15_2052at 2152.071 kb on + strand, within HP15_2052at 2152.084 kb on + strand, within HP15_2052at 2152.194 kb on + strand, within HP15_2052at 2152.266 kb on - strand, within HP15_2052at 2152.318 kb on - strand, within HP15_2052at 2152.408 kb on - strand, within HP15_2052at 2152.493 kb on + strand, within HP15_2052at 2152.493 kb on + strand, within HP15_2052at 2152.501 kb on - strand, within HP15_2052at 2152.501 kb on - strand, within HP15_2052at 2152.527 kb on + strand, within HP15_2052at 2152.577 kb on - strand, within HP15_2052at 2152.648 kb on - strand, within HP15_2052at 2152.811 kb on + strand, within HP15_2052at 2152.811 kb on + strand, within HP15_2052at 2152.811 kb on + strand, within HP15_2052at 2152.890 kb on + strand, within HP15_2052at 2152.945 kb on - strandat 2152.952 kb on - strandat 2152.952 kb on - strandat 2152.952 kb on - strandat 2153.034 kb on + strandat 2153.116 kb on - strandat 2153.134 kb on + strandat 2153.142 kb on - strandat 2153.387 kb on - strand, within HP15_2053at 2153.387 kb on - strand, within HP15_2053at 2153.469 kb on - strand, within HP15_2053at 2153.701 kb on - strand, within HP15_2053at 2153.743 kb on + strand, within HP15_2053at 2153.879 kb on - strand, within HP15_2053at 2153.885 kb on + strand, within HP15_2053at 2153.886 kb on - strand, within HP15_2053at 2153.886 kb on - strand, within HP15_2053at 2153.931 kb on - strand, within HP15_2053at 2153.979 kb on + strand, within HP15_2053at 2154.015 kb on - strand, within HP15_2053

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.064 mg/ml
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2,151,572 + -0.1
2,151,654 + -0.1
2,151,673 - -1.2
2,151,673 - -0.7
2,151,779 - -1.5
2,151,785 - -1.2
2,151,870 + HP15_2052 0.16 -0.8
2,151,878 - HP15_2052 0.16 -0.8
2,152,008 - HP15_2052 0.26 +0.5
2,152,069 - HP15_2052 0.30 +1.1
2,152,071 + HP15_2052 0.30 -0.6
2,152,084 + HP15_2052 0.31 +0.2
2,152,194 + HP15_2052 0.39 -0.9
2,152,266 - HP15_2052 0.44 -0.4
2,152,318 - HP15_2052 0.48 -2.9
2,152,408 - HP15_2052 0.54 -0.9
2,152,493 + HP15_2052 0.61 +1.0
2,152,493 + HP15_2052 0.61 +0.1
2,152,501 - HP15_2052 0.61 -0.7
2,152,501 - HP15_2052 0.61 -0.3
2,152,527 + HP15_2052 0.63 +0.0
2,152,577 - HP15_2052 0.67 -0.8
2,152,648 - HP15_2052 0.72 +0.7
2,152,811 + HP15_2052 0.83 -0.9
2,152,811 + HP15_2052 0.83 -0.7
2,152,811 + HP15_2052 0.83 -0.5
2,152,890 + HP15_2052 0.89 -1.5
2,152,945 - +0.7
2,152,952 - -0.7
2,152,952 - -1.0
2,152,952 - -0.5
2,153,034 + +0.7
2,153,116 - -0.6
2,153,134 + +0.3
2,153,142 - +0.4
2,153,387 - HP15_2053 0.13 +1.1
2,153,387 - HP15_2053 0.13 -0.3
2,153,469 - HP15_2053 0.17 +0.5
2,153,701 - HP15_2053 0.30 -0.3
2,153,743 + HP15_2053 0.32 -0.8
2,153,879 - HP15_2053 0.39 +1.1
2,153,885 + HP15_2053 0.40 +0.2
2,153,886 - HP15_2053 0.40 -1.0
2,153,886 - HP15_2053 0.40 +0.2
2,153,931 - HP15_2053 0.42 +1.1
2,153,979 + HP15_2053 0.45 +0.3
2,154,015 - HP15_2053 0.46 -0.3

Or see this region's nucleotide sequence