Experiment: m.b. D-Cycloserine 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1724 and HP15_1725 are separated by 40 nucleotides HP15_1725 and HP15_1726 overlap by 1 nucleotides HP15_1726 and HP15_1727 overlap by 4 nucleotides
HP15_1724: HP15_1724 - conserved hypothetical protein, at 1,823,756 to 1,824,154
_1724
HP15_1725: HP15_1725 - conserved hypothetical protein, at 1,824,195 to 1,824,863
_1725
HP15_1726: HP15_1726 - selenide water dikinase, at 1,824,863 to 1,827,139
_1726
HP15_1727: HP15_1727 - glycosyltransferase, at 1,827,136 to 1,828,110
_1727
Position (kb)
1824
1825
1826
1827
1828 Strain fitness (log2 ratio)
-1
0
1
2 at 1824.037 kb on + strand, within HP15_1724 at 1824.435 kb on + strand, within HP15_1725 at 1824.491 kb on + strand, within HP15_1725 at 1824.547 kb on - strand, within HP15_1725 at 1824.596 kb on + strand, within HP15_1725 at 1824.706 kb on - strand, within HP15_1725 at 1824.706 kb on - strand, within HP15_1725 at 1824.797 kb on + strand at 1824.870 kb on - strand at 1824.902 kb on - strand at 1825.250 kb on + strand, within HP15_1726 at 1825.250 kb on + strand, within HP15_1726 at 1825.287 kb on + strand, within HP15_1726 at 1825.375 kb on - strand, within HP15_1726 at 1825.412 kb on - strand, within HP15_1726 at 1825.485 kb on + strand, within HP15_1726 at 1825.485 kb on + strand, within HP15_1726 at 1825.493 kb on - strand, within HP15_1726 at 1825.493 kb on - strand, within HP15_1726 at 1825.582 kb on - strand, within HP15_1726 at 1825.604 kb on - strand, within HP15_1726 at 1825.626 kb on + strand, within HP15_1726 at 1825.629 kb on - strand, within HP15_1726 at 1825.690 kb on + strand, within HP15_1726 at 1825.690 kb on + strand, within HP15_1726 at 1825.807 kb on + strand, within HP15_1726 at 1825.897 kb on + strand, within HP15_1726 at 1825.900 kb on - strand, within HP15_1726 at 1826.033 kb on + strand, within HP15_1726 at 1826.102 kb on + strand, within HP15_1726 at 1826.142 kb on - strand, within HP15_1726 at 1826.175 kb on - strand, within HP15_1726 at 1826.252 kb on + strand, within HP15_1726 at 1826.260 kb on - strand, within HP15_1726 at 1826.503 kb on + strand, within HP15_1726 at 1826.516 kb on + strand, within HP15_1726 at 1826.524 kb on - strand, within HP15_1726 at 1826.640 kb on + strand, within HP15_1726 at 1826.781 kb on - strand, within HP15_1726 at 1826.794 kb on + strand, within HP15_1726 at 1827.016 kb on + strand at 1827.021 kb on + strand at 1827.023 kb on + strand at 1827.041 kb on - strand at 1827.058 kb on - strand at 1827.097 kb on + strand at 1827.119 kb on + strand at 1827.144 kb on + strand at 1827.152 kb on - strand at 1827.154 kb on + strand at 1827.154 kb on + strand at 1827.154 kb on + strand at 1827.172 kb on - strand at 1827.275 kb on + strand, within HP15_1727 at 1827.433 kb on - strand, within HP15_1727 at 1827.562 kb on + strand, within HP15_1727 at 1827.623 kb on + strand, within HP15_1727 at 1827.631 kb on - strand, within HP15_1727 at 1827.800 kb on - strand, within HP15_1727 at 1827.902 kb on - strand, within HP15_1727 at 1828.022 kb on - strand at 1828.046 kb on + strand at 1828.067 kb on + strand at 1828.100 kb on + strand at 1828.124 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.064 mg/ml remove 1,824,037 + HP15_1724 0.70 -1.4 1,824,435 + HP15_1725 0.36 +0.9 1,824,491 + HP15_1725 0.44 -0.0 1,824,547 - HP15_1725 0.53 -0.8 1,824,596 + HP15_1725 0.60 +0.5 1,824,706 - HP15_1725 0.76 +0.6 1,824,706 - HP15_1725 0.76 +2.2 1,824,797 + -0.7 1,824,870 - -0.1 1,824,902 - -0.8 1,825,250 + HP15_1726 0.17 -0.4 1,825,250 + HP15_1726 0.17 +0.2 1,825,287 + HP15_1726 0.19 +1.0 1,825,375 - HP15_1726 0.22 +0.3 1,825,412 - HP15_1726 0.24 +0.1 1,825,485 + HP15_1726 0.27 +0.6 1,825,485 + HP15_1726 0.27 +0.6 1,825,493 - HP15_1726 0.28 -0.4 1,825,493 - HP15_1726 0.28 -0.5 1,825,582 - HP15_1726 0.32 +0.6 1,825,604 - HP15_1726 0.33 +0.8 1,825,626 + HP15_1726 0.34 -0.3 1,825,629 - HP15_1726 0.34 +1.7 1,825,690 + HP15_1726 0.36 +0.1 1,825,690 + HP15_1726 0.36 +1.4 1,825,807 + HP15_1726 0.41 -0.1 1,825,897 + HP15_1726 0.45 -0.0 1,825,900 - HP15_1726 0.46 +0.6 1,826,033 + HP15_1726 0.51 +0.1 1,826,102 + HP15_1726 0.54 +0.6 1,826,142 - HP15_1726 0.56 -0.4 1,826,175 - HP15_1726 0.58 +1.2 1,826,252 + HP15_1726 0.61 +0.0 1,826,260 - HP15_1726 0.61 +1.1 1,826,503 + HP15_1726 0.72 +0.6 1,826,516 + HP15_1726 0.73 +0.4 1,826,524 - HP15_1726 0.73 +0.9 1,826,640 + HP15_1726 0.78 +0.2 1,826,781 - HP15_1726 0.84 -0.9 1,826,794 + HP15_1726 0.85 +0.2 1,827,016 + -0.0 1,827,021 + -0.9 1,827,023 + +1.3 1,827,041 - +0.5 1,827,058 - +0.1 1,827,097 + -1.1 1,827,119 + -0.2 1,827,144 + +0.4 1,827,152 - -0.9 1,827,154 + +0.9 1,827,154 + +2.1 1,827,154 + +1.0 1,827,172 - -0.2 1,827,275 + HP15_1727 0.14 -0.3 1,827,433 - HP15_1727 0.30 -0.4 1,827,562 + HP15_1727 0.44 +0.6 1,827,623 + HP15_1727 0.50 -0.1 1,827,631 - HP15_1727 0.51 +0.6 1,827,800 - HP15_1727 0.68 -0.2 1,827,902 - HP15_1727 0.79 +0.9 1,828,022 - +0.6 1,828,046 + +2.1 1,828,067 + +0.6 1,828,100 + +0.1 1,828,124 + +1.9
Or see this region's nucleotide sequence