Strain Fitness in Marinobacter adhaerens HP15 around HP15_1726

Experiment: m.b. D-Cycloserine 0.064 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1724 and HP15_1725 are separated by 40 nucleotidesHP15_1725 and HP15_1726 overlap by 1 nucleotidesHP15_1726 and HP15_1727 overlap by 4 nucleotides HP15_1724: HP15_1724 - conserved hypothetical protein, at 1,823,756 to 1,824,154 _1724 HP15_1725: HP15_1725 - conserved hypothetical protein, at 1,824,195 to 1,824,863 _1725 HP15_1726: HP15_1726 - selenide water dikinase, at 1,824,863 to 1,827,139 _1726 HP15_1727: HP15_1727 - glycosyltransferase, at 1,827,136 to 1,828,110 _1727 Position (kb) 1824 1825 1826 1827 1828Strain fitness (log2 ratio) -1 0 1 2at 1824.037 kb on + strand, within HP15_1724at 1824.435 kb on + strand, within HP15_1725at 1824.491 kb on + strand, within HP15_1725at 1824.547 kb on - strand, within HP15_1725at 1824.596 kb on + strand, within HP15_1725at 1824.706 kb on - strand, within HP15_1725at 1824.706 kb on - strand, within HP15_1725at 1824.797 kb on + strandat 1824.870 kb on - strandat 1824.902 kb on - strandat 1825.250 kb on + strand, within HP15_1726at 1825.250 kb on + strand, within HP15_1726at 1825.287 kb on + strand, within HP15_1726at 1825.375 kb on - strand, within HP15_1726at 1825.412 kb on - strand, within HP15_1726at 1825.485 kb on + strand, within HP15_1726at 1825.485 kb on + strand, within HP15_1726at 1825.493 kb on - strand, within HP15_1726at 1825.493 kb on - strand, within HP15_1726at 1825.582 kb on - strand, within HP15_1726at 1825.604 kb on - strand, within HP15_1726at 1825.626 kb on + strand, within HP15_1726at 1825.629 kb on - strand, within HP15_1726at 1825.690 kb on + strand, within HP15_1726at 1825.690 kb on + strand, within HP15_1726at 1825.807 kb on + strand, within HP15_1726at 1825.897 kb on + strand, within HP15_1726at 1825.900 kb on - strand, within HP15_1726at 1826.033 kb on + strand, within HP15_1726at 1826.102 kb on + strand, within HP15_1726at 1826.142 kb on - strand, within HP15_1726at 1826.175 kb on - strand, within HP15_1726at 1826.252 kb on + strand, within HP15_1726at 1826.260 kb on - strand, within HP15_1726at 1826.503 kb on + strand, within HP15_1726at 1826.516 kb on + strand, within HP15_1726at 1826.524 kb on - strand, within HP15_1726at 1826.640 kb on + strand, within HP15_1726at 1826.781 kb on - strand, within HP15_1726at 1826.794 kb on + strand, within HP15_1726at 1827.016 kb on + strandat 1827.021 kb on + strandat 1827.023 kb on + strandat 1827.041 kb on - strandat 1827.058 kb on - strandat 1827.097 kb on + strandat 1827.119 kb on + strandat 1827.144 kb on + strandat 1827.152 kb on - strandat 1827.154 kb on + strandat 1827.154 kb on + strandat 1827.154 kb on + strandat 1827.172 kb on - strandat 1827.275 kb on + strand, within HP15_1727at 1827.433 kb on - strand, within HP15_1727at 1827.562 kb on + strand, within HP15_1727at 1827.623 kb on + strand, within HP15_1727at 1827.631 kb on - strand, within HP15_1727at 1827.800 kb on - strand, within HP15_1727at 1827.902 kb on - strand, within HP15_1727at 1828.022 kb on - strandat 1828.046 kb on + strandat 1828.067 kb on + strandat 1828.100 kb on + strandat 1828.124 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.064 mg/ml
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1,824,037 + HP15_1724 0.70 -1.4
1,824,435 + HP15_1725 0.36 +0.9
1,824,491 + HP15_1725 0.44 -0.0
1,824,547 - HP15_1725 0.53 -0.8
1,824,596 + HP15_1725 0.60 +0.5
1,824,706 - HP15_1725 0.76 +0.6
1,824,706 - HP15_1725 0.76 +2.2
1,824,797 + -0.7
1,824,870 - -0.1
1,824,902 - -0.8
1,825,250 + HP15_1726 0.17 -0.4
1,825,250 + HP15_1726 0.17 +0.2
1,825,287 + HP15_1726 0.19 +1.0
1,825,375 - HP15_1726 0.22 +0.3
1,825,412 - HP15_1726 0.24 +0.1
1,825,485 + HP15_1726 0.27 +0.6
1,825,485 + HP15_1726 0.27 +0.6
1,825,493 - HP15_1726 0.28 -0.4
1,825,493 - HP15_1726 0.28 -0.5
1,825,582 - HP15_1726 0.32 +0.6
1,825,604 - HP15_1726 0.33 +0.8
1,825,626 + HP15_1726 0.34 -0.3
1,825,629 - HP15_1726 0.34 +1.7
1,825,690 + HP15_1726 0.36 +0.1
1,825,690 + HP15_1726 0.36 +1.4
1,825,807 + HP15_1726 0.41 -0.1
1,825,897 + HP15_1726 0.45 -0.0
1,825,900 - HP15_1726 0.46 +0.6
1,826,033 + HP15_1726 0.51 +0.1
1,826,102 + HP15_1726 0.54 +0.6
1,826,142 - HP15_1726 0.56 -0.4
1,826,175 - HP15_1726 0.58 +1.2
1,826,252 + HP15_1726 0.61 +0.0
1,826,260 - HP15_1726 0.61 +1.1
1,826,503 + HP15_1726 0.72 +0.6
1,826,516 + HP15_1726 0.73 +0.4
1,826,524 - HP15_1726 0.73 +0.9
1,826,640 + HP15_1726 0.78 +0.2
1,826,781 - HP15_1726 0.84 -0.9
1,826,794 + HP15_1726 0.85 +0.2
1,827,016 + -0.0
1,827,021 + -0.9
1,827,023 + +1.3
1,827,041 - +0.5
1,827,058 - +0.1
1,827,097 + -1.1
1,827,119 + -0.2
1,827,144 + +0.4
1,827,152 - -0.9
1,827,154 + +0.9
1,827,154 + +2.1
1,827,154 + +1.0
1,827,172 - -0.2
1,827,275 + HP15_1727 0.14 -0.3
1,827,433 - HP15_1727 0.30 -0.4
1,827,562 + HP15_1727 0.44 +0.6
1,827,623 + HP15_1727 0.50 -0.1
1,827,631 - HP15_1727 0.51 +0.6
1,827,800 - HP15_1727 0.68 -0.2
1,827,902 - HP15_1727 0.79 +0.9
1,828,022 - +0.6
1,828,046 + +2.1
1,828,067 + +0.6
1,828,100 + +0.1
1,828,124 + +1.9

Or see this region's nucleotide sequence