Experiment: m.b. D-Cycloserine 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1717 and HP15_1718 are separated by 187 nucleotides HP15_1718 and HP15_1719 are separated by 5 nucleotides HP15_1719 and HP15_1720 are separated by 25 nucleotides HP15_1720 and HP15_1721 are separated by 47 nucleotides
HP15_1717: HP15_1717 - phospholipid/glycerol acyltransferase, at 1,815,028 to 1,816,254
_1717
HP15_1718: HP15_1718 - ATP-dependent DNA helicase RecQ, at 1,816,442 to 1,818,310
_1718
HP15_1719: HP15_1719 - conserved hypothetical protein, at 1,818,316 to 1,818,828
_1719
HP15_1720: HP15_1720 - hypothetical protein, at 1,818,854 to 1,819,009
_1720
HP15_1721: HP15_1721 - conserved hypothetical protein, secreted, at 1,819,057 to 1,820,013
_1721
Position (kb)
1816
1817
1818
1819 Strain fitness (log2 ratio)
-1
0
1
2 at 1816.297 kb on - strand at 1816.402 kb on + strand at 1816.410 kb on - strand at 1816.410 kb on - strand at 1816.468 kb on + strand at 1816.468 kb on + strand at 1816.468 kb on + strand at 1816.476 kb on - strand at 1816.668 kb on - strand, within HP15_1718 at 1816.735 kb on + strand, within HP15_1718 at 1816.785 kb on - strand, within HP15_1718 at 1816.785 kb on - strand, within HP15_1718 at 1816.820 kb on + strand, within HP15_1718 at 1816.820 kb on + strand, within HP15_1718 at 1816.828 kb on - strand, within HP15_1718 at 1816.833 kb on - strand, within HP15_1718 at 1816.989 kb on - strand, within HP15_1718 at 1817.098 kb on + strand, within HP15_1718 at 1817.105 kb on + strand, within HP15_1718 at 1817.283 kb on + strand, within HP15_1718 at 1817.457 kb on - strand, within HP15_1718 at 1817.467 kb on + strand, within HP15_1718 at 1817.470 kb on + strand, within HP15_1718 at 1817.540 kb on - strand, within HP15_1718 at 1817.892 kb on + strand, within HP15_1718 at 1817.975 kb on - strand, within HP15_1718 at 1818.304 kb on + strand at 1818.334 kb on - strand at 1818.691 kb on - strand, within HP15_1719 at 1818.693 kb on + strand, within HP15_1719 at 1818.693 kb on + strand, within HP15_1719 at 1818.693 kb on + strand, within HP15_1719 at 1818.707 kb on - strand, within HP15_1719 at 1818.779 kb on + strand at 1818.792 kb on - strand at 1818.801 kb on + strand at 1818.801 kb on + strand at 1818.804 kb on - strand at 1818.814 kb on - strand at 1818.818 kb on + strand at 1818.828 kb on + strand at 1818.836 kb on - strand at 1818.926 kb on + strand, within HP15_1720 at 1819.004 kb on + strand at 1819.150 kb on - strand at 1819.175 kb on - strand, within HP15_1721 at 1819.292 kb on - strand, within HP15_1721
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.064 mg/ml remove 1,816,297 - -0.2 1,816,402 + -0.1 1,816,410 - +1.1 1,816,410 - -0.0 1,816,468 + -0.3 1,816,468 + -0.2 1,816,468 + -0.5 1,816,476 - +0.7 1,816,668 - HP15_1718 0.12 +0.2 1,816,735 + HP15_1718 0.16 +1.1 1,816,785 - HP15_1718 0.18 +0.6 1,816,785 - HP15_1718 0.18 +1.9 1,816,820 + HP15_1718 0.20 +1.9 1,816,820 + HP15_1718 0.20 +0.8 1,816,828 - HP15_1718 0.21 +0.7 1,816,833 - HP15_1718 0.21 +0.9 1,816,989 - HP15_1718 0.29 -1.0 1,817,098 + HP15_1718 0.35 +0.6 1,817,105 + HP15_1718 0.35 +0.1 1,817,283 + HP15_1718 0.45 +0.6 1,817,457 - HP15_1718 0.54 -1.6 1,817,467 + HP15_1718 0.55 -0.4 1,817,470 + HP15_1718 0.55 -0.1 1,817,540 - HP15_1718 0.59 +1.6 1,817,892 + HP15_1718 0.78 -0.7 1,817,975 - HP15_1718 0.82 +1.0 1,818,304 + +0.5 1,818,334 - +0.7 1,818,691 - HP15_1719 0.73 -1.7 1,818,693 + HP15_1719 0.73 -0.4 1,818,693 + HP15_1719 0.73 +0.1 1,818,693 + HP15_1719 0.73 -0.0 1,818,707 - HP15_1719 0.76 +2.1 1,818,779 + -0.1 1,818,792 - -1.5 1,818,801 + +0.4 1,818,801 + +0.6 1,818,804 - -0.4 1,818,814 - -0.4 1,818,818 + +0.2 1,818,828 + -0.5 1,818,836 - +0.6 1,818,926 + HP15_1720 0.46 +0.1 1,819,004 + -0.4 1,819,150 - -0.9 1,819,175 - HP15_1721 0.12 -0.0 1,819,292 - HP15_1721 0.25 +0.1
Or see this region's nucleotide sequence