Experiment: m.b. D-Cycloserine 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_168 and HP15_169 are separated by 87 nucleotides HP15_169 and HP15_171 are separated by 230 nucleotides HP15_171 and HP15_170 are separated by 45 nucleotides HP15_170 and HP15_172 are separated by 41 nucleotides HP15_172 and HP15_173 overlap by 17 nucleotides
HP15_168: HP15_168 - conserved hypothetical protein, at 163,409 to 163,513
_168
HP15_169: HP15_169 - hypothetical protein, at 163,601 to 163,714
_169
HP15_171: HP15_171 - cytochrome c, class I-like protein, at 163,945 to 164,073
_171
HP15_170: HP15_170 - hypothetical protein, at 164,119 to 164,322
_170
HP15_172: HP15_172 - protein-S-isoprenylcysteine methyltransferase, at 164,364 to 165,032
_172
HP15_173: HP15_173 - secreted protein, at 165,016 to 165,189
_173
Position (kb) 163
164
165 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 162.967 kb on - strand at 162.987 kb on + strand at 163.301 kb on - strand at 163.327 kb on + strand at 163.327 kb on + strand at 163.327 kb on + strand at 163.334 kb on + strand at 163.334 kb on + strand at 163.335 kb on - strand at 163.335 kb on - strand at 163.335 kb on - strand at 163.342 kb on - strand at 163.352 kb on - strand at 163.459 kb on + strand, within HP15_168 at 163.460 kb on + strand, within HP15_168 at 163.471 kb on + strand, within HP15_168 at 163.471 kb on + strand, within HP15_168 at 163.471 kb on + strand, within HP15_168 at 163.478 kb on + strand, within HP15_168 at 163.478 kb on - strand, within HP15_168 at 163.508 kb on + strand at 163.516 kb on - strand at 163.562 kb on + strand at 163.562 kb on + strand at 163.562 kb on + strand at 163.570 kb on - strand at 163.570 kb on - strand at 163.606 kb on + strand at 163.829 kb on - strand at 163.897 kb on - strand at 163.967 kb on - strand, within HP15_171 at 164.008 kb on + strand, within HP15_171 at 164.030 kb on + strand, within HP15_171 at 164.038 kb on - strand, within HP15_171 at 164.038 kb on - strand, within HP15_171 at 164.038 kb on - strand, within HP15_171 at 164.128 kb on + strand at 164.141 kb on - strand, within HP15_170 at 164.242 kb on + strand, within HP15_170 at 164.255 kb on - strand, within HP15_170 at 164.258 kb on + strand, within HP15_170 at 164.264 kb on + strand, within HP15_170 at 164.264 kb on + strand, within HP15_170 at 164.266 kb on + strand, within HP15_170 at 164.269 kb on + strand, within HP15_170 at 164.272 kb on - strand, within HP15_170 at 164.272 kb on - strand, within HP15_170 at 164.274 kb on + strand, within HP15_170 at 164.276 kb on + strand, within HP15_170 at 164.282 kb on - strand, within HP15_170 at 164.291 kb on + strand, within HP15_170 at 164.295 kb on - strand, within HP15_170 at 164.432 kb on - strand, within HP15_172 at 164.514 kb on - strand, within HP15_172 at 164.543 kb on + strand, within HP15_172 at 164.543 kb on + strand, within HP15_172 at 164.543 kb on + strand, within HP15_172 at 164.543 kb on + strand, within HP15_172 at 164.543 kb on + strand, within HP15_172 at 164.551 kb on - strand, within HP15_172 at 164.551 kb on - strand, within HP15_172 at 164.561 kb on - strand, within HP15_172 at 164.656 kb on + strand, within HP15_172 at 164.664 kb on - strand, within HP15_172 at 164.675 kb on - strand, within HP15_172 at 164.703 kb on + strand, within HP15_172 at 164.759 kb on - strand, within HP15_172 at 164.787 kb on + strand, within HP15_172 at 164.787 kb on + strand, within HP15_172 at 164.820 kb on + strand, within HP15_172 at 164.939 kb on - strand, within HP15_172 at 165.036 kb on + strand, within HP15_173 at 165.044 kb on - strand, within HP15_173 at 165.044 kb on - strand, within HP15_173 at 165.057 kb on + strand, within HP15_173
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.064 mg/ml remove 162,967 - -0.4 162,987 + -0.1 163,301 - -0.3 163,327 + +0.2 163,327 + +1.5 163,327 + -0.1 163,334 + +0.9 163,334 + +1.1 163,335 - -0.9 163,335 - -0.7 163,335 - +4.1 163,342 - -0.1 163,352 - +0.1 163,459 + HP15_168 0.48 -0.5 163,460 + HP15_168 0.49 -0.7 163,471 + HP15_168 0.59 +0.7 163,471 + HP15_168 0.59 +0.4 163,471 + HP15_168 0.59 +0.0 163,478 + HP15_168 0.66 -1.6 163,478 - HP15_168 0.66 +0.9 163,508 + -0.4 163,516 - +0.4 163,562 + -0.1 163,562 + -0.8 163,562 + -1.5 163,570 - -1.3 163,570 - +0.8 163,606 + -1.5 163,829 - -0.1 163,897 - +0.1 163,967 - HP15_171 0.17 +0.9 164,008 + HP15_171 0.49 +0.8 164,030 + HP15_171 0.66 +2.8 164,038 - HP15_171 0.72 +1.8 164,038 - HP15_171 0.72 -0.6 164,038 - HP15_171 0.72 +0.3 164,128 + -0.3 164,141 - HP15_170 0.11 -0.8 164,242 + HP15_170 0.60 +1.5 164,255 - HP15_170 0.67 +0.7 164,258 + HP15_170 0.68 -0.3 164,264 + HP15_170 0.71 +0.6 164,264 + HP15_170 0.71 -0.3 164,266 + HP15_170 0.72 -0.3 164,269 + HP15_170 0.74 -1.1 164,272 - HP15_170 0.75 -0.5 164,272 - HP15_170 0.75 -0.9 164,274 + HP15_170 0.76 +1.4 164,276 + HP15_170 0.77 +0.4 164,282 - HP15_170 0.80 +0.8 164,291 + HP15_170 0.84 +0.0 164,295 - HP15_170 0.86 -0.0 164,432 - HP15_172 0.10 -1.8 164,514 - HP15_172 0.22 -0.5 164,543 + HP15_172 0.27 -1.1 164,543 + HP15_172 0.27 +0.7 164,543 + HP15_172 0.27 -1.9 164,543 + HP15_172 0.27 +0.1 164,543 + HP15_172 0.27 +1.5 164,551 - HP15_172 0.28 +0.6 164,551 - HP15_172 0.28 +0.2 164,561 - HP15_172 0.29 -1.3 164,656 + HP15_172 0.44 -1.0 164,664 - HP15_172 0.45 -0.6 164,675 - HP15_172 0.46 -1.3 164,703 + HP15_172 0.51 +1.4 164,759 - HP15_172 0.59 -0.0 164,787 + HP15_172 0.63 -0.7 164,787 + HP15_172 0.63 -0.8 164,820 + HP15_172 0.68 +0.3 164,939 - HP15_172 0.86 -0.2 165,036 + HP15_173 0.11 +0.2 165,044 - HP15_173 0.16 +1.5 165,044 - HP15_173 0.16 +1.8 165,057 + HP15_173 0.24 -0.7
Or see this region's nucleotide sequence