Experiment: m.b. D-Cycloserine 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1614 and HP15_1615 are separated by 137 nucleotides HP15_1615 and HP15_1616 are separated by 130 nucleotides HP15_1616 and HP15_1618 are separated by 14 nucleotides
HP15_1614: HP15_1614 - conserved hypothetical protein, at 1,710,746 to 1,711,618
_1614
HP15_1615: HP15_1615 - TonB-dependent receptor, plug, at 1,711,756 to 1,713,906
_1615
HP15_1616: HP15_1616 - protein containing DnaJ domain, at 1,714,037 to 1,714,681
_1616
HP15_1618: HP15_1618 - uncharacterized conserved protein UCP026166, sodium bile acid symporter, at 1,714,696 to 1,715,451
_1618
Position (kb)
1711
1712
1713
1714 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1710.869 kb on + strand, within HP15_1614 at 1710.990 kb on + strand, within HP15_1614 at 1711.097 kb on + strand, within HP15_1614 at 1711.219 kb on + strand, within HP15_1614 at 1711.291 kb on - strand, within HP15_1614 at 1711.313 kb on + strand, within HP15_1614 at 1711.319 kb on - strand, within HP15_1614 at 1711.626 kb on - strand at 1711.717 kb on + strand at 1711.718 kb on - strand at 1711.735 kb on - strand at 1711.888 kb on - strand at 1711.938 kb on + strand at 1712.092 kb on + strand, within HP15_1615 at 1712.114 kb on - strand, within HP15_1615 at 1712.116 kb on + strand, within HP15_1615 at 1712.176 kb on + strand, within HP15_1615 at 1712.325 kb on + strand, within HP15_1615 at 1712.333 kb on - strand, within HP15_1615 at 1712.333 kb on - strand, within HP15_1615 at 1712.333 kb on - strand, within HP15_1615 at 1712.333 kb on - strand, within HP15_1615 at 1712.365 kb on + strand, within HP15_1615 at 1712.465 kb on + strand, within HP15_1615 at 1712.612 kb on + strand, within HP15_1615 at 1712.644 kb on - strand, within HP15_1615 at 1712.771 kb on - strand, within HP15_1615 at 1712.994 kb on - strand, within HP15_1615 at 1713.047 kb on - strand, within HP15_1615 at 1713.120 kb on + strand, within HP15_1615 at 1713.221 kb on + strand, within HP15_1615 at 1713.317 kb on + strand, within HP15_1615 at 1713.340 kb on + strand, within HP15_1615 at 1713.348 kb on - strand, within HP15_1615 at 1713.381 kb on - strand, within HP15_1615 at 1713.404 kb on + strand, within HP15_1615 at 1713.469 kb on + strand, within HP15_1615 at 1713.477 kb on - strand, within HP15_1615 at 1713.477 kb on - strand, within HP15_1615 at 1713.843 kb on + strand at 1713.861 kb on - strand at 1713.945 kb on - strand at 1714.004 kb on - strand at 1714.062 kb on - strand at 1714.067 kb on - strand at 1714.210 kb on + strand, within HP15_1616 at 1714.219 kb on - strand, within HP15_1616 at 1714.243 kb on - strand, within HP15_1616 at 1714.306 kb on + strand, within HP15_1616 at 1714.306 kb on + strand, within HP15_1616 at 1714.314 kb on - strand, within HP15_1616 at 1714.354 kb on + strand, within HP15_1616 at 1714.517 kb on - strand, within HP15_1616 at 1714.529 kb on - strand, within HP15_1616 at 1714.663 kb on - strand at 1714.677 kb on + strand at 1714.720 kb on - strand at 1714.749 kb on - strand at 1714.765 kb on - strand at 1714.882 kb on + strand, within HP15_1618
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.064 mg/ml remove 1,710,869 + HP15_1614 0.14 -0.4 1,710,990 + HP15_1614 0.28 +1.0 1,711,097 + HP15_1614 0.40 +0.6 1,711,219 + HP15_1614 0.54 +0.0 1,711,291 - HP15_1614 0.62 -1.3 1,711,313 + HP15_1614 0.65 +1.2 1,711,319 - HP15_1614 0.66 +3.6 1,711,626 - +1.2 1,711,717 + +0.0 1,711,718 - -0.8 1,711,735 - +1.3 1,711,888 - -0.4 1,711,938 + -0.0 1,712,092 + HP15_1615 0.16 +0.8 1,712,114 - HP15_1615 0.17 -0.1 1,712,116 + HP15_1615 0.17 +1.7 1,712,176 + HP15_1615 0.20 +1.2 1,712,325 + HP15_1615 0.26 +1.2 1,712,333 - HP15_1615 0.27 -0.7 1,712,333 - HP15_1615 0.27 +1.9 1,712,333 - HP15_1615 0.27 +0.1 1,712,333 - HP15_1615 0.27 -0.0 1,712,365 + HP15_1615 0.28 +1.4 1,712,465 + HP15_1615 0.33 +3.1 1,712,612 + HP15_1615 0.40 -0.3 1,712,644 - HP15_1615 0.41 +0.7 1,712,771 - HP15_1615 0.47 -0.1 1,712,994 - HP15_1615 0.58 -0.0 1,713,047 - HP15_1615 0.60 -0.2 1,713,120 + HP15_1615 0.63 +1.0 1,713,221 + HP15_1615 0.68 +0.2 1,713,317 + HP15_1615 0.73 +0.8 1,713,340 + HP15_1615 0.74 +0.8 1,713,348 - HP15_1615 0.74 +2.9 1,713,381 - HP15_1615 0.76 +0.4 1,713,404 + HP15_1615 0.77 +1.6 1,713,469 + HP15_1615 0.80 +0.0 1,713,477 - HP15_1615 0.80 +2.1 1,713,477 - HP15_1615 0.80 -0.4 1,713,843 + +1.1 1,713,861 - +0.9 1,713,945 - +2.9 1,714,004 - -2.2 1,714,062 - +0.3 1,714,067 - +1.1 1,714,210 + HP15_1616 0.27 +0.6 1,714,219 - HP15_1616 0.28 -0.7 1,714,243 - HP15_1616 0.32 -0.1 1,714,306 + HP15_1616 0.42 +0.2 1,714,306 + HP15_1616 0.42 +0.8 1,714,314 - HP15_1616 0.43 +0.0 1,714,354 + HP15_1616 0.49 +1.6 1,714,517 - HP15_1616 0.74 -0.2 1,714,529 - HP15_1616 0.76 -1.0 1,714,663 - -0.7 1,714,677 + -0.1 1,714,720 - -0.4 1,714,749 - -0.6 1,714,765 - -0.4 1,714,882 + HP15_1618 0.25 -0.1
Or see this region's nucleotide sequence