Strain Fitness in Marinobacter adhaerens HP15 around HP15_1615

Experiment: m.b. D-Cycloserine 0.064 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1614 and HP15_1615 are separated by 137 nucleotidesHP15_1615 and HP15_1616 are separated by 130 nucleotidesHP15_1616 and HP15_1618 are separated by 14 nucleotides HP15_1614: HP15_1614 - conserved hypothetical protein, at 1,710,746 to 1,711,618 _1614 HP15_1615: HP15_1615 - TonB-dependent receptor, plug, at 1,711,756 to 1,713,906 _1615 HP15_1616: HP15_1616 - protein containing DnaJ domain, at 1,714,037 to 1,714,681 _1616 HP15_1618: HP15_1618 - uncharacterized conserved protein UCP026166, sodium bile acid symporter, at 1,714,696 to 1,715,451 _1618 Position (kb) 1711 1712 1713 1714Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1710.869 kb on + strand, within HP15_1614at 1710.990 kb on + strand, within HP15_1614at 1711.097 kb on + strand, within HP15_1614at 1711.219 kb on + strand, within HP15_1614at 1711.291 kb on - strand, within HP15_1614at 1711.313 kb on + strand, within HP15_1614at 1711.319 kb on - strand, within HP15_1614at 1711.626 kb on - strandat 1711.717 kb on + strandat 1711.718 kb on - strandat 1711.735 kb on - strandat 1711.888 kb on - strandat 1711.938 kb on + strandat 1712.092 kb on + strand, within HP15_1615at 1712.114 kb on - strand, within HP15_1615at 1712.116 kb on + strand, within HP15_1615at 1712.176 kb on + strand, within HP15_1615at 1712.325 kb on + strand, within HP15_1615at 1712.333 kb on - strand, within HP15_1615at 1712.333 kb on - strand, within HP15_1615at 1712.333 kb on - strand, within HP15_1615at 1712.333 kb on - strand, within HP15_1615at 1712.365 kb on + strand, within HP15_1615at 1712.465 kb on + strand, within HP15_1615at 1712.612 kb on + strand, within HP15_1615at 1712.644 kb on - strand, within HP15_1615at 1712.771 kb on - strand, within HP15_1615at 1712.994 kb on - strand, within HP15_1615at 1713.047 kb on - strand, within HP15_1615at 1713.120 kb on + strand, within HP15_1615at 1713.221 kb on + strand, within HP15_1615at 1713.317 kb on + strand, within HP15_1615at 1713.340 kb on + strand, within HP15_1615at 1713.348 kb on - strand, within HP15_1615at 1713.381 kb on - strand, within HP15_1615at 1713.404 kb on + strand, within HP15_1615at 1713.469 kb on + strand, within HP15_1615at 1713.477 kb on - strand, within HP15_1615at 1713.477 kb on - strand, within HP15_1615at 1713.843 kb on + strandat 1713.861 kb on - strandat 1713.945 kb on - strandat 1714.004 kb on - strandat 1714.062 kb on - strandat 1714.067 kb on - strandat 1714.210 kb on + strand, within HP15_1616at 1714.219 kb on - strand, within HP15_1616at 1714.243 kb on - strand, within HP15_1616at 1714.306 kb on + strand, within HP15_1616at 1714.306 kb on + strand, within HP15_1616at 1714.314 kb on - strand, within HP15_1616at 1714.354 kb on + strand, within HP15_1616at 1714.517 kb on - strand, within HP15_1616at 1714.529 kb on - strand, within HP15_1616at 1714.663 kb on - strandat 1714.677 kb on + strandat 1714.720 kb on - strandat 1714.749 kb on - strandat 1714.765 kb on - strandat 1714.882 kb on + strand, within HP15_1618

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.064 mg/ml
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1,710,869 + HP15_1614 0.14 -0.4
1,710,990 + HP15_1614 0.28 +1.0
1,711,097 + HP15_1614 0.40 +0.6
1,711,219 + HP15_1614 0.54 +0.0
1,711,291 - HP15_1614 0.62 -1.3
1,711,313 + HP15_1614 0.65 +1.2
1,711,319 - HP15_1614 0.66 +3.6
1,711,626 - +1.2
1,711,717 + +0.0
1,711,718 - -0.8
1,711,735 - +1.3
1,711,888 - -0.4
1,711,938 + -0.0
1,712,092 + HP15_1615 0.16 +0.8
1,712,114 - HP15_1615 0.17 -0.1
1,712,116 + HP15_1615 0.17 +1.7
1,712,176 + HP15_1615 0.20 +1.2
1,712,325 + HP15_1615 0.26 +1.2
1,712,333 - HP15_1615 0.27 -0.7
1,712,333 - HP15_1615 0.27 +1.9
1,712,333 - HP15_1615 0.27 +0.1
1,712,333 - HP15_1615 0.27 -0.0
1,712,365 + HP15_1615 0.28 +1.4
1,712,465 + HP15_1615 0.33 +3.1
1,712,612 + HP15_1615 0.40 -0.3
1,712,644 - HP15_1615 0.41 +0.7
1,712,771 - HP15_1615 0.47 -0.1
1,712,994 - HP15_1615 0.58 -0.0
1,713,047 - HP15_1615 0.60 -0.2
1,713,120 + HP15_1615 0.63 +1.0
1,713,221 + HP15_1615 0.68 +0.2
1,713,317 + HP15_1615 0.73 +0.8
1,713,340 + HP15_1615 0.74 +0.8
1,713,348 - HP15_1615 0.74 +2.9
1,713,381 - HP15_1615 0.76 +0.4
1,713,404 + HP15_1615 0.77 +1.6
1,713,469 + HP15_1615 0.80 +0.0
1,713,477 - HP15_1615 0.80 +2.1
1,713,477 - HP15_1615 0.80 -0.4
1,713,843 + +1.1
1,713,861 - +0.9
1,713,945 - +2.9
1,714,004 - -2.2
1,714,062 - +0.3
1,714,067 - +1.1
1,714,210 + HP15_1616 0.27 +0.6
1,714,219 - HP15_1616 0.28 -0.7
1,714,243 - HP15_1616 0.32 -0.1
1,714,306 + HP15_1616 0.42 +0.2
1,714,306 + HP15_1616 0.42 +0.8
1,714,314 - HP15_1616 0.43 +0.0
1,714,354 + HP15_1616 0.49 +1.6
1,714,517 - HP15_1616 0.74 -0.2
1,714,529 - HP15_1616 0.76 -1.0
1,714,663 - -0.7
1,714,677 + -0.1
1,714,720 - -0.4
1,714,749 - -0.6
1,714,765 - -0.4
1,714,882 + HP15_1618 0.25 -0.1

Or see this region's nucleotide sequence