Experiment: m.b. D-Cycloserine 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1593 and HP15_1594 are separated by 91 nucleotides HP15_1594 and HP15_1595 overlap by 8 nucleotides HP15_1595 and HP15_1596 are separated by 463 nucleotides
HP15_1593: HP15_1593 - patatin-like phospholipase domain-containing protein, at 1,687,088 to 1,688,560
_1593
HP15_1594: HP15_1594 - hypothetical protein, at 1,688,652 to 1,690,559
_1594
HP15_1595: HP15_1595 - hypothetical protein, at 1,690,552 to 1,690,821
_1595
HP15_1596: HP15_1596 - D-amino acid dehydrogenase 2 small subunit, at 1,691,285 to 1,692,505
_1596
Position (kb)
1688
1689
1690
1691 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1687.759 kb on + strand, within HP15_1593 at 1687.807 kb on + strand, within HP15_1593 at 1687.873 kb on + strand, within HP15_1593 at 1687.880 kb on + strand, within HP15_1593 at 1688.070 kb on - strand, within HP15_1593 at 1688.098 kb on + strand, within HP15_1593 at 1688.101 kb on + strand, within HP15_1593 at 1688.122 kb on - strand, within HP15_1593 at 1688.434 kb on + strand at 1688.456 kb on + strand at 1688.489 kb on - strand at 1688.541 kb on - strand at 1688.633 kb on + strand at 1688.763 kb on + strand at 1688.841 kb on + strand at 1688.860 kb on - strand, within HP15_1594 at 1688.860 kb on - strand, within HP15_1594 at 1688.881 kb on - strand, within HP15_1594 at 1688.907 kb on - strand, within HP15_1594 at 1688.961 kb on + strand, within HP15_1594 at 1689.099 kb on + strand, within HP15_1594 at 1689.099 kb on + strand, within HP15_1594 at 1689.099 kb on + strand, within HP15_1594 at 1689.107 kb on - strand, within HP15_1594 at 1689.107 kb on - strand, within HP15_1594 at 1689.107 kb on - strand, within HP15_1594 at 1689.107 kb on - strand, within HP15_1594 at 1689.275 kb on + strand, within HP15_1594 at 1689.524 kb on - strand, within HP15_1594 at 1689.526 kb on + strand, within HP15_1594 at 1689.621 kb on + strand, within HP15_1594 at 1689.815 kb on - strand, within HP15_1594 at 1689.819 kb on + strand, within HP15_1594 at 1689.819 kb on + strand, within HP15_1594 at 1689.889 kb on + strand, within HP15_1594 at 1689.934 kb on + strand, within HP15_1594 at 1689.962 kb on + strand, within HP15_1594 at 1689.962 kb on + strand, within HP15_1594 at 1690.020 kb on + strand, within HP15_1594 at 1690.051 kb on + strand, within HP15_1594 at 1690.063 kb on + strand, within HP15_1594 at 1690.068 kb on + strand, within HP15_1594 at 1690.071 kb on - strand, within HP15_1594 at 1690.071 kb on - strand, within HP15_1594 at 1690.076 kb on - strand, within HP15_1594 at 1690.097 kb on - strand, within HP15_1594 at 1690.104 kb on + strand, within HP15_1594 at 1690.251 kb on - strand, within HP15_1594 at 1690.309 kb on - strand, within HP15_1594 at 1690.389 kb on + strand at 1690.452 kb on - strand at 1690.454 kb on - strand at 1690.523 kb on + strand at 1690.639 kb on + strand, within HP15_1595 at 1690.822 kb on - strand at 1690.903 kb on - strand at 1690.994 kb on + strand at 1690.994 kb on + strand at 1690.994 kb on + strand at 1690.994 kb on + strand at 1691.002 kb on - strand at 1691.002 kb on - strand at 1691.002 kb on - strand at 1691.099 kb on + strand at 1691.208 kb on + strand at 1691.312 kb on + strand at 1691.333 kb on + strand at 1691.333 kb on + strand at 1691.341 kb on - strand at 1691.355 kb on + strand at 1691.404 kb on - strand at 1691.446 kb on + strand, within HP15_1596 at 1691.478 kb on - strand, within HP15_1596 at 1691.528 kb on - strand, within HP15_1596
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.064 mg/ml remove 1,687,759 + HP15_1593 0.46 -0.4 1,687,807 + HP15_1593 0.49 -1.0 1,687,873 + HP15_1593 0.53 -0.1 1,687,880 + HP15_1593 0.54 -1.4 1,688,070 - HP15_1593 0.67 +1.5 1,688,098 + HP15_1593 0.69 +0.7 1,688,101 + HP15_1593 0.69 -0.7 1,688,122 - HP15_1593 0.70 +0.3 1,688,434 + -0.0 1,688,456 + +0.4 1,688,489 - -1.6 1,688,541 - +0.5 1,688,633 + -1.5 1,688,763 + +1.0 1,688,841 + -0.1 1,688,860 - HP15_1594 0.11 -0.2 1,688,860 - HP15_1594 0.11 +0.2 1,688,881 - HP15_1594 0.12 +0.9 1,688,907 - HP15_1594 0.13 -0.0 1,688,961 + HP15_1594 0.16 +0.3 1,689,099 + HP15_1594 0.23 +0.4 1,689,099 + HP15_1594 0.23 -1.6 1,689,099 + HP15_1594 0.23 +0.1 1,689,107 - HP15_1594 0.24 -0.1 1,689,107 - HP15_1594 0.24 -0.2 1,689,107 - HP15_1594 0.24 +0.3 1,689,107 - HP15_1594 0.24 +0.7 1,689,275 + HP15_1594 0.33 +0.3 1,689,524 - HP15_1594 0.46 -0.6 1,689,526 + HP15_1594 0.46 -0.2 1,689,621 + HP15_1594 0.51 +0.8 1,689,815 - HP15_1594 0.61 +0.2 1,689,819 + HP15_1594 0.61 -1.9 1,689,819 + HP15_1594 0.61 +0.6 1,689,889 + HP15_1594 0.65 -0.7 1,689,934 + HP15_1594 0.67 -0.1 1,689,962 + HP15_1594 0.69 +0.6 1,689,962 + HP15_1594 0.69 +1.6 1,690,020 + HP15_1594 0.72 +0.6 1,690,051 + HP15_1594 0.73 -1.0 1,690,063 + HP15_1594 0.74 -3.2 1,690,068 + HP15_1594 0.74 -0.2 1,690,071 - HP15_1594 0.74 -0.2 1,690,071 - HP15_1594 0.74 -2.2 1,690,076 - HP15_1594 0.75 +0.3 1,690,097 - HP15_1594 0.76 -0.4 1,690,104 + HP15_1594 0.76 -1.4 1,690,251 - HP15_1594 0.84 -0.8 1,690,309 - HP15_1594 0.87 -0.1 1,690,389 + +1.8 1,690,452 - +1.3 1,690,454 - -0.8 1,690,523 + +0.7 1,690,639 + HP15_1595 0.32 -1.0 1,690,822 - +0.6 1,690,903 - +0.4 1,690,994 + -0.5 1,690,994 + +0.4 1,690,994 + +1.6 1,690,994 + +1.1 1,691,002 - +0.6 1,691,002 - +0.7 1,691,002 - +0.5 1,691,099 + +1.0 1,691,208 + -0.2 1,691,312 + +0.4 1,691,333 + -0.9 1,691,333 + +0.4 1,691,341 - +0.9 1,691,355 + -0.4 1,691,404 - +0.8 1,691,446 + HP15_1596 0.13 +0.1 1,691,478 - HP15_1596 0.16 +0.1 1,691,528 - HP15_1596 0.20 +1.7
Or see this region's nucleotide sequence