Strain Fitness in Marinobacter adhaerens HP15 around HP15_1557

Experiment: m.b. D-Cycloserine 0.064 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1555 and HP15_1556 are separated by 28 nucleotidesHP15_1556 and HP15_1557 overlap by 4 nucleotidesHP15_1557 and HP15_1558 are separated by 85 nucleotidesHP15_1558 and HP15_1559 overlap by 4 nucleotides HP15_1555: HP15_1555 - protein containing DUF938, at 1,636,907 to 1,637,509 _1555 HP15_1556: HP15_1556 - conserved hypothetical protein, at 1,637,538 to 1,638,131 _1556 HP15_1557: HP15_1557 - acylphosphatase, at 1,638,128 to 1,638,403 _1557 HP15_1558: HP15_1558 - fructosamine kinase, at 1,638,489 to 1,639,262 _1558 HP15_1559: HP15_1559 - auxin efflux carrier, at 1,639,259 to 1,640,206 _1559 Position (kb) 1638 1639Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1637.132 kb on - strand, within HP15_1555at 1637.260 kb on - strand, within HP15_1555at 1637.285 kb on - strand, within HP15_1555at 1637.365 kb on - strand, within HP15_1555at 1637.382 kb on - strand, within HP15_1555at 1637.384 kb on + strand, within HP15_1555at 1637.392 kb on - strand, within HP15_1555at 1637.581 kb on - strandat 1637.609 kb on - strand, within HP15_1556at 1637.715 kb on + strand, within HP15_1556at 1637.733 kb on - strand, within HP15_1556at 1637.806 kb on + strand, within HP15_1556at 1637.812 kb on - strand, within HP15_1556at 1637.887 kb on + strand, within HP15_1556at 1637.911 kb on + strand, within HP15_1556at 1637.916 kb on + strand, within HP15_1556at 1637.944 kb on - strand, within HP15_1556at 1638.050 kb on - strand, within HP15_1556at 1638.050 kb on - strand, within HP15_1556at 1638.052 kb on + strand, within HP15_1556at 1638.106 kb on - strandat 1638.319 kb on - strand, within HP15_1557at 1638.586 kb on + strand, within HP15_1558at 1638.619 kb on + strand, within HP15_1558at 1638.708 kb on - strand, within HP15_1558at 1638.896 kb on - strand, within HP15_1558at 1638.899 kb on + strand, within HP15_1558at 1638.930 kb on - strand, within HP15_1558at 1639.023 kb on + strand, within HP15_1558at 1639.025 kb on + strand, within HP15_1558at 1639.149 kb on - strand, within HP15_1558at 1639.177 kb on + strand, within HP15_1558at 1639.257 kb on + strandat 1639.257 kb on + strandat 1639.257 kb on + strandat 1639.257 kb on + strandat 1639.257 kb on + strandat 1639.265 kb on - strandat 1639.267 kb on + strandat 1639.291 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.064 mg/ml
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1,637,132 - HP15_1555 0.37 +1.3
1,637,260 - HP15_1555 0.59 +0.9
1,637,285 - HP15_1555 0.63 +0.6
1,637,365 - HP15_1555 0.76 -0.3
1,637,382 - HP15_1555 0.79 +0.7
1,637,384 + HP15_1555 0.79 -0.8
1,637,392 - HP15_1555 0.80 -1.8
1,637,581 - +0.1
1,637,609 - HP15_1556 0.12 -1.4
1,637,715 + HP15_1556 0.30 +1.0
1,637,733 - HP15_1556 0.33 +1.6
1,637,806 + HP15_1556 0.45 +0.5
1,637,812 - HP15_1556 0.46 +0.3
1,637,887 + HP15_1556 0.59 -1.2
1,637,911 + HP15_1556 0.63 +2.9
1,637,916 + HP15_1556 0.64 +0.2
1,637,944 - HP15_1556 0.68 -0.4
1,638,050 - HP15_1556 0.86 -1.2
1,638,050 - HP15_1556 0.86 -0.0
1,638,052 + HP15_1556 0.87 -0.7
1,638,106 - -0.3
1,638,319 - HP15_1557 0.69 +1.6
1,638,586 + HP15_1558 0.13 +1.6
1,638,619 + HP15_1558 0.17 -0.2
1,638,708 - HP15_1558 0.28 +1.6
1,638,896 - HP15_1558 0.53 -1.4
1,638,899 + HP15_1558 0.53 -1.0
1,638,930 - HP15_1558 0.57 +0.6
1,639,023 + HP15_1558 0.69 +1.4
1,639,025 + HP15_1558 0.69 +0.1
1,639,149 - HP15_1558 0.85 -1.2
1,639,177 + HP15_1558 0.89 +2.2
1,639,257 + -1.4
1,639,257 + +1.2
1,639,257 + -0.6
1,639,257 + -0.8
1,639,257 + +0.4
1,639,265 - -1.0
1,639,267 + +1.1
1,639,291 + -0.0

Or see this region's nucleotide sequence