Experiment: m.b. D-Cycloserine 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1555 and HP15_1556 are separated by 28 nucleotides HP15_1556 and HP15_1557 overlap by 4 nucleotides HP15_1557 and HP15_1558 are separated by 85 nucleotides HP15_1558 and HP15_1559 overlap by 4 nucleotides
HP15_1555: HP15_1555 - protein containing DUF938, at 1,636,907 to 1,637,509
_1555
HP15_1556: HP15_1556 - conserved hypothetical protein, at 1,637,538 to 1,638,131
_1556
HP15_1557: HP15_1557 - acylphosphatase, at 1,638,128 to 1,638,403
_1557
HP15_1558: HP15_1558 - fructosamine kinase, at 1,638,489 to 1,639,262
_1558
HP15_1559: HP15_1559 - auxin efflux carrier, at 1,639,259 to 1,640,206
_1559
Position (kb)
1638
1639 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1637.132 kb on - strand, within HP15_1555 at 1637.260 kb on - strand, within HP15_1555 at 1637.285 kb on - strand, within HP15_1555 at 1637.365 kb on - strand, within HP15_1555 at 1637.382 kb on - strand, within HP15_1555 at 1637.384 kb on + strand, within HP15_1555 at 1637.392 kb on - strand, within HP15_1555 at 1637.581 kb on - strand at 1637.609 kb on - strand, within HP15_1556 at 1637.715 kb on + strand, within HP15_1556 at 1637.733 kb on - strand, within HP15_1556 at 1637.806 kb on + strand, within HP15_1556 at 1637.812 kb on - strand, within HP15_1556 at 1637.887 kb on + strand, within HP15_1556 at 1637.911 kb on + strand, within HP15_1556 at 1637.916 kb on + strand, within HP15_1556 at 1637.944 kb on - strand, within HP15_1556 at 1638.050 kb on - strand, within HP15_1556 at 1638.050 kb on - strand, within HP15_1556 at 1638.052 kb on + strand, within HP15_1556 at 1638.106 kb on - strand at 1638.319 kb on - strand, within HP15_1557 at 1638.586 kb on + strand, within HP15_1558 at 1638.619 kb on + strand, within HP15_1558 at 1638.708 kb on - strand, within HP15_1558 at 1638.896 kb on - strand, within HP15_1558 at 1638.899 kb on + strand, within HP15_1558 at 1638.930 kb on - strand, within HP15_1558 at 1639.023 kb on + strand, within HP15_1558 at 1639.025 kb on + strand, within HP15_1558 at 1639.149 kb on - strand, within HP15_1558 at 1639.177 kb on + strand, within HP15_1558 at 1639.257 kb on + strand at 1639.257 kb on + strand at 1639.257 kb on + strand at 1639.257 kb on + strand at 1639.257 kb on + strand at 1639.265 kb on - strand at 1639.267 kb on + strand at 1639.291 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.064 mg/ml remove 1,637,132 - HP15_1555 0.37 +1.3 1,637,260 - HP15_1555 0.59 +0.9 1,637,285 - HP15_1555 0.63 +0.6 1,637,365 - HP15_1555 0.76 -0.3 1,637,382 - HP15_1555 0.79 +0.7 1,637,384 + HP15_1555 0.79 -0.8 1,637,392 - HP15_1555 0.80 -1.8 1,637,581 - +0.1 1,637,609 - HP15_1556 0.12 -1.4 1,637,715 + HP15_1556 0.30 +1.0 1,637,733 - HP15_1556 0.33 +1.6 1,637,806 + HP15_1556 0.45 +0.5 1,637,812 - HP15_1556 0.46 +0.3 1,637,887 + HP15_1556 0.59 -1.2 1,637,911 + HP15_1556 0.63 +2.9 1,637,916 + HP15_1556 0.64 +0.2 1,637,944 - HP15_1556 0.68 -0.4 1,638,050 - HP15_1556 0.86 -1.2 1,638,050 - HP15_1556 0.86 -0.0 1,638,052 + HP15_1556 0.87 -0.7 1,638,106 - -0.3 1,638,319 - HP15_1557 0.69 +1.6 1,638,586 + HP15_1558 0.13 +1.6 1,638,619 + HP15_1558 0.17 -0.2 1,638,708 - HP15_1558 0.28 +1.6 1,638,896 - HP15_1558 0.53 -1.4 1,638,899 + HP15_1558 0.53 -1.0 1,638,930 - HP15_1558 0.57 +0.6 1,639,023 + HP15_1558 0.69 +1.4 1,639,025 + HP15_1558 0.69 +0.1 1,639,149 - HP15_1558 0.85 -1.2 1,639,177 + HP15_1558 0.89 +2.2 1,639,257 + -1.4 1,639,257 + +1.2 1,639,257 + -0.6 1,639,257 + -0.8 1,639,257 + +0.4 1,639,265 - -1.0 1,639,267 + +1.1 1,639,291 + -0.0
Or see this region's nucleotide sequence