Experiment: m.b. D-Cycloserine 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1344 and HP15_1345 are separated by 18 nucleotides HP15_1345 and HP15_1346 are separated by 3 nucleotides HP15_1346 and HP15_1347 are separated by 9 nucleotides
HP15_1344: HP15_1344 - thiosulfate transporter subunit, at 1,412,060 to 1,413,094
_1344
HP15_1345: HP15_1345 - sulphate ABC transporter, permease protein CysT, at 1,413,113 to 1,413,985
_1345
HP15_1346: HP15_1346 - sulfate ABC transporter, inner membrane subunit CysW, at 1,413,989 to 1,414,819
_1346
HP15_1347: HP15_1347 - sulfate/thiosulfate transporter subunit, at 1,414,829 to 1,415,917
_1347
Position (kb)
1413
1414 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1412.153 kb on + strand at 1412.309 kb on + strand, within HP15_1344 at 1412.327 kb on - strand, within HP15_1344 at 1412.469 kb on - strand, within HP15_1344 at 1412.498 kb on + strand, within HP15_1344 at 1412.570 kb on - strand, within HP15_1344 at 1412.591 kb on - strand, within HP15_1344 at 1412.591 kb on - strand, within HP15_1344 at 1412.601 kb on - strand, within HP15_1344 at 1412.601 kb on - strand, within HP15_1344 at 1412.630 kb on + strand, within HP15_1344 at 1412.652 kb on + strand, within HP15_1344 at 1412.653 kb on + strand, within HP15_1344 at 1412.661 kb on - strand, within HP15_1344 at 1412.872 kb on + strand, within HP15_1344 at 1412.872 kb on + strand, within HP15_1344 at 1412.891 kb on + strand, within HP15_1344 at 1413.126 kb on + strand at 1413.149 kb on + strand at 1413.279 kb on + strand, within HP15_1345 at 1413.297 kb on - strand, within HP15_1345 at 1413.373 kb on - strand, within HP15_1345 at 1413.469 kb on + strand, within HP15_1345 at 1413.574 kb on + strand, within HP15_1345 at 1413.593 kb on + strand, within HP15_1345 at 1413.593 kb on + strand, within HP15_1345 at 1413.601 kb on - strand, within HP15_1345 at 1413.601 kb on - strand, within HP15_1345 at 1413.648 kb on - strand, within HP15_1345 at 1413.679 kb on + strand, within HP15_1345 at 1413.718 kb on + strand, within HP15_1345 at 1413.774 kb on + strand, within HP15_1345 at 1413.774 kb on + strand, within HP15_1345 at 1413.833 kb on - strand, within HP15_1345 at 1413.985 kb on + strand at 1413.988 kb on - strand at 1413.988 kb on - strand at 1413.988 kb on - strand at 1413.993 kb on - strand at 1414.131 kb on - strand, within HP15_1346 at 1414.201 kb on + strand, within HP15_1346 at 1414.209 kb on - strand, within HP15_1346 at 1414.209 kb on - strand, within HP15_1346 at 1414.243 kb on - strand, within HP15_1346 at 1414.325 kb on - strand, within HP15_1346 at 1414.408 kb on - strand, within HP15_1346 at 1414.596 kb on - strand, within HP15_1346 at 1414.612 kb on + strand, within HP15_1346 at 1414.630 kb on + strand, within HP15_1346 at 1414.643 kb on - strand, within HP15_1346 at 1414.700 kb on - strand, within HP15_1346 at 1414.712 kb on + strand, within HP15_1346 at 1414.712 kb on + strand, within HP15_1346 at 1414.768 kb on + strand at 1414.870 kb on + strand at 1414.870 kb on + strand at 1414.878 kb on - strand at 1414.925 kb on + strand at 1414.959 kb on - strand, within HP15_1347
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.064 mg/ml remove 1,412,153 + +1.1 1,412,309 + HP15_1344 0.24 +0.0 1,412,327 - HP15_1344 0.26 -0.2 1,412,469 - HP15_1344 0.40 +2.2 1,412,498 + HP15_1344 0.42 +3.3 1,412,570 - HP15_1344 0.49 -0.5 1,412,591 - HP15_1344 0.51 -1.2 1,412,591 - HP15_1344 0.51 -0.5 1,412,601 - HP15_1344 0.52 +0.4 1,412,601 - HP15_1344 0.52 -0.1 1,412,630 + HP15_1344 0.55 -0.7 1,412,652 + HP15_1344 0.57 -1.0 1,412,653 + HP15_1344 0.57 +1.0 1,412,661 - HP15_1344 0.58 -1.1 1,412,872 + HP15_1344 0.78 +0.6 1,412,872 + HP15_1344 0.78 -0.9 1,412,891 + HP15_1344 0.80 -1.7 1,413,126 + -1.2 1,413,149 + -0.2 1,413,279 + HP15_1345 0.19 +0.4 1,413,297 - HP15_1345 0.21 -1.0 1,413,373 - HP15_1345 0.30 +0.1 1,413,469 + HP15_1345 0.41 -1.2 1,413,574 + HP15_1345 0.53 -1.8 1,413,593 + HP15_1345 0.55 -0.6 1,413,593 + HP15_1345 0.55 -0.2 1,413,601 - HP15_1345 0.56 +0.7 1,413,601 - HP15_1345 0.56 -0.8 1,413,648 - HP15_1345 0.61 -0.8 1,413,679 + HP15_1345 0.65 -1.3 1,413,718 + HP15_1345 0.69 -3.6 1,413,774 + HP15_1345 0.76 -0.4 1,413,774 + HP15_1345 0.76 -0.3 1,413,833 - HP15_1345 0.82 -0.9 1,413,985 + -0.8 1,413,988 - -2.8 1,413,988 - -1.3 1,413,988 - -1.2 1,413,993 - -0.6 1,414,131 - HP15_1346 0.17 -1.4 1,414,201 + HP15_1346 0.26 +1.2 1,414,209 - HP15_1346 0.26 -0.5 1,414,209 - HP15_1346 0.26 -0.4 1,414,243 - HP15_1346 0.31 -0.6 1,414,325 - HP15_1346 0.40 -1.6 1,414,408 - HP15_1346 0.50 -0.6 1,414,596 - HP15_1346 0.73 -0.7 1,414,612 + HP15_1346 0.75 +1.1 1,414,630 + HP15_1346 0.77 +0.1 1,414,643 - HP15_1346 0.79 -2.7 1,414,700 - HP15_1346 0.86 +0.2 1,414,712 + HP15_1346 0.87 -0.8 1,414,712 + HP15_1346 0.87 -0.6 1,414,768 + -0.3 1,414,870 + -0.7 1,414,870 + +0.6 1,414,878 - -1.2 1,414,925 + +0.2 1,414,959 - HP15_1347 0.12 -0.4
Or see this region's nucleotide sequence