Experiment: m.b. D-Cycloserine 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1333 and HP15_1334 overlap by 1 nucleotides HP15_1334 and HP15_1335 are separated by 9 nucleotides HP15_1335 and HP15_1336 are separated by 116 nucleotides
HP15_1333: HP15_1333 - error-prone DNA polymerase, at 1,399,176 to 1,402,295
_1333
HP15_1334: HP15_1334 - Error-prone polymerase for DNA repair (imuB or polY like) (from data) , at 1,402,295 to 1,403,713
_1334
HP15_1335: HP15_1335 - uncharacterized conserved protein UCP037290, at 1,403,723 to 1,404,412
_1335
HP15_1336: HP15_1336 - pterin-4-alpha-carbinolamine dehydratase, at 1,404,529 to 1,404,888
_1336
Position (kb)
1402
1403
1404 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1401.314 kb on - strand, within HP15_1333 at 1401.362 kb on - strand, within HP15_1333 at 1401.466 kb on + strand, within HP15_1333 at 1401.514 kb on + strand, within HP15_1333 at 1401.522 kb on - strand, within HP15_1333 at 1401.806 kb on + strand, within HP15_1333 at 1401.819 kb on - strand, within HP15_1333 at 1401.951 kb on - strand, within HP15_1333 at 1401.965 kb on - strand, within HP15_1333 at 1402.171 kb on + strand at 1402.179 kb on - strand at 1402.194 kb on - strand at 1402.194 kb on - strand at 1402.194 kb on - strand at 1402.225 kb on + strand at 1402.279 kb on - strand at 1402.419 kb on + strand at 1402.549 kb on + strand, within HP15_1334 at 1402.596 kb on + strand, within HP15_1334 at 1402.606 kb on + strand, within HP15_1334 at 1402.614 kb on - strand, within HP15_1334 at 1402.654 kb on - strand, within HP15_1334 at 1402.968 kb on + strand, within HP15_1334 at 1402.978 kb on + strand, within HP15_1334 at 1403.179 kb on - strand, within HP15_1334 at 1403.179 kb on - strand, within HP15_1334 at 1403.250 kb on + strand, within HP15_1334 at 1403.305 kb on - strand, within HP15_1334 at 1403.312 kb on + strand, within HP15_1334 at 1403.343 kb on - strand, within HP15_1334 at 1403.419 kb on - strand, within HP15_1334 at 1403.468 kb on + strand, within HP15_1334 at 1403.516 kb on - strand, within HP15_1334 at 1403.605 kb on - strand at 1403.755 kb on - strand at 1403.780 kb on - strand at 1403.917 kb on - strand, within HP15_1335 at 1403.919 kb on + strand, within HP15_1335 at 1403.932 kb on + strand, within HP15_1335 at 1403.949 kb on - strand, within HP15_1335 at 1403.974 kb on + strand, within HP15_1335 at 1404.095 kb on + strand, within HP15_1335 at 1404.105 kb on + strand, within HP15_1335 at 1404.108 kb on - strand, within HP15_1335 at 1404.136 kb on + strand, within HP15_1335 at 1404.278 kb on + strand, within HP15_1335 at 1404.361 kb on + strand at 1404.381 kb on + strand at 1404.403 kb on - strand at 1404.549 kb on + strand at 1404.564 kb on - strand at 1404.571 kb on - strand, within HP15_1336 at 1404.710 kb on + strand, within HP15_1336
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.064 mg/ml remove 1,401,314 - HP15_1333 0.69 -0.6 1,401,362 - HP15_1333 0.70 +0.6 1,401,466 + HP15_1333 0.73 -0.9 1,401,514 + HP15_1333 0.75 -0.5 1,401,522 - HP15_1333 0.75 -0.7 1,401,806 + HP15_1333 0.84 -0.3 1,401,819 - HP15_1333 0.85 -0.3 1,401,951 - HP15_1333 0.89 -0.4 1,401,965 - HP15_1333 0.89 +0.6 1,402,171 + -0.2 1,402,179 - -1.0 1,402,194 - -0.7 1,402,194 - -0.3 1,402,194 - -1.4 1,402,225 + -0.8 1,402,279 - -1.6 1,402,419 + -2.2 1,402,549 + HP15_1334 0.18 -0.5 1,402,596 + HP15_1334 0.21 -0.8 1,402,606 + HP15_1334 0.22 -0.6 1,402,614 - HP15_1334 0.22 -0.4 1,402,654 - HP15_1334 0.25 -0.8 1,402,968 + HP15_1334 0.47 +0.4 1,402,978 + HP15_1334 0.48 -0.9 1,403,179 - HP15_1334 0.62 -0.4 1,403,179 - HP15_1334 0.62 -0.5 1,403,250 + HP15_1334 0.67 -0.4 1,403,305 - HP15_1334 0.71 -1.5 1,403,312 + HP15_1334 0.72 -0.4 1,403,343 - HP15_1334 0.74 -0.6 1,403,419 - HP15_1334 0.79 +0.3 1,403,468 + HP15_1334 0.83 +0.1 1,403,516 - HP15_1334 0.86 +0.3 1,403,605 - -0.5 1,403,755 - +0.0 1,403,780 - -1.9 1,403,917 - HP15_1335 0.28 +0.6 1,403,919 + HP15_1335 0.28 -0.7 1,403,932 + HP15_1335 0.30 -0.9 1,403,949 - HP15_1335 0.33 +2.2 1,403,974 + HP15_1335 0.36 +0.3 1,404,095 + HP15_1335 0.54 -0.4 1,404,105 + HP15_1335 0.55 +0.1 1,404,108 - HP15_1335 0.56 -0.6 1,404,136 + HP15_1335 0.60 -0.5 1,404,278 + HP15_1335 0.80 -0.3 1,404,361 + -1.1 1,404,381 + -0.1 1,404,403 - -0.0 1,404,549 + +0.8 1,404,564 - +1.3 1,404,571 - HP15_1336 0.12 -0.9 1,404,710 + HP15_1336 0.50 +0.0
Or see this region's nucleotide sequence