Experiment: m.b. D-Cycloserine 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1283 and HP15_1284 are separated by 205 nucleotides HP15_1284 and HP15_1285 are separated by 60 nucleotides HP15_1285 and HP15_1286 are separated by 28 nucleotides
HP15_1283: HP15_1283 - RNA polymerase, sigma 70 subunit, RpoD family, at 1,343,618 to 1,344,613
_1283
HP15_1284: HP15_1284 - conserved hypothetical protein, secreted, at 1,344,819 to 1,345,394
_1284
HP15_1285: HP15_1285 - endonuclease III, at 1,345,455 to 1,346,093
_1285
HP15_1286: HP15_1286 - SoxR-reducing system protein RsxE, at 1,346,122 to 1,346,838
_1286
Position (kb)
1344
1345
1346 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1343.877 kb on + strand, within HP15_1283 at 1343.924 kb on - strand, within HP15_1283 at 1343.969 kb on + strand, within HP15_1283 at 1343.994 kb on + strand, within HP15_1283 at 1343.994 kb on + strand, within HP15_1283 at 1343.997 kb on - strand, within HP15_1283 at 1344.004 kb on + strand, within HP15_1283 at 1344.012 kb on - strand, within HP15_1283 at 1344.012 kb on - strand, within HP15_1283 at 1344.341 kb on + strand, within HP15_1283 at 1344.390 kb on - strand, within HP15_1283 at 1344.396 kb on + strand, within HP15_1283 at 1344.495 kb on - strand, within HP15_1283 at 1344.538 kb on - strand at 1344.750 kb on + strand at 1344.750 kb on + strand at 1344.758 kb on - strand at 1344.864 kb on + strand at 1344.978 kb on - strand, within HP15_1284 at 1345.195 kb on - strand, within HP15_1284 at 1345.383 kb on + strand at 1345.512 kb on + strand at 1345.629 kb on - strand, within HP15_1285 at 1345.654 kb on - strand, within HP15_1285 at 1345.709 kb on - strand, within HP15_1285 at 1345.713 kb on + strand, within HP15_1285 at 1345.721 kb on - strand, within HP15_1285 at 1345.721 kb on - strand, within HP15_1285 at 1345.853 kb on + strand, within HP15_1285 at 1345.853 kb on + strand, within HP15_1285 at 1345.895 kb on + strand, within HP15_1285 at 1345.907 kb on + strand, within HP15_1285 at 1345.947 kb on - strand, within HP15_1285 at 1345.955 kb on + strand, within HP15_1285 at 1345.990 kb on - strand, within HP15_1285 at 1346.017 kb on - strand, within HP15_1285 at 1346.059 kb on - strand at 1346.098 kb on + strand at 1346.341 kb on - strand, within HP15_1286
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.064 mg/ml remove 1,343,877 + HP15_1283 0.26 +0.8 1,343,924 - HP15_1283 0.31 -1.7 1,343,969 + HP15_1283 0.35 -2.1 1,343,994 + HP15_1283 0.38 -0.6 1,343,994 + HP15_1283 0.38 -1.1 1,343,997 - HP15_1283 0.38 -0.2 1,344,004 + HP15_1283 0.39 -0.6 1,344,012 - HP15_1283 0.40 -1.0 1,344,012 - HP15_1283 0.40 +0.1 1,344,341 + HP15_1283 0.73 +0.1 1,344,390 - HP15_1283 0.78 +1.3 1,344,396 + HP15_1283 0.78 +2.2 1,344,495 - HP15_1283 0.88 -2.0 1,344,538 - +0.3 1,344,750 + -2.0 1,344,750 + -0.2 1,344,758 - +0.1 1,344,864 + -1.6 1,344,978 - HP15_1284 0.28 +0.2 1,345,195 - HP15_1284 0.65 -0.6 1,345,383 + +1.1 1,345,512 + -0.7 1,345,629 - HP15_1285 0.27 -1.7 1,345,654 - HP15_1285 0.31 -0.1 1,345,709 - HP15_1285 0.40 -0.9 1,345,713 + HP15_1285 0.40 -1.4 1,345,721 - HP15_1285 0.42 -2.6 1,345,721 - HP15_1285 0.42 -1.2 1,345,853 + HP15_1285 0.62 -1.9 1,345,853 + HP15_1285 0.62 -1.4 1,345,895 + HP15_1285 0.69 -2.4 1,345,907 + HP15_1285 0.71 -2.0 1,345,947 - HP15_1285 0.77 -0.9 1,345,955 + HP15_1285 0.78 -1.2 1,345,990 - HP15_1285 0.84 -0.6 1,346,017 - HP15_1285 0.88 +0.1 1,346,059 - +1.2 1,346,098 + -1.2 1,346,341 - HP15_1286 0.31 -0.5
Or see this region's nucleotide sequence