Experiment: m.b. D-Cycloserine 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1148 and HP15_1149 are separated by 57 nucleotides HP15_1149 and HP15_1150 are separated by 34 nucleotides
HP15_1148: HP15_1148 - alpha amylase, catalytic region, at 1,182,134 to 1,183,873
_1148
HP15_1149: HP15_1149 - quinone oxidoreductase putative, PIG3, at 1,183,931 to 1,184,923
_1149
HP15_1150: HP15_1150 - oxidoreductase, zinc-binding dehydrogenase family, at 1,184,958 to 1,185,983
_1150
Position (kb)
1183
1184
1185 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1183.081 kb on + strand, within HP15_1148 at 1183.150 kb on + strand, within HP15_1148 at 1183.298 kb on + strand, within HP15_1148 at 1183.385 kb on - strand, within HP15_1148 at 1183.422 kb on + strand, within HP15_1148 at 1183.485 kb on + strand, within HP15_1148 at 1183.532 kb on + strand, within HP15_1148 at 1183.537 kb on - strand, within HP15_1148 at 1183.546 kb on + strand, within HP15_1148 at 1183.578 kb on + strand, within HP15_1148 at 1183.629 kb on + strand, within HP15_1148 at 1183.758 kb on + strand at 1183.821 kb on + strand at 1183.821 kb on + strand at 1183.829 kb on - strand at 1183.830 kb on - strand at 1183.847 kb on - strand at 1183.956 kb on - strand at 1184.068 kb on - strand, within HP15_1149 at 1184.068 kb on - strand, within HP15_1149 at 1184.154 kb on - strand, within HP15_1149 at 1184.174 kb on - strand, within HP15_1149 at 1184.182 kb on + strand, within HP15_1149 at 1184.552 kb on + strand, within HP15_1149 at 1184.570 kb on - strand, within HP15_1149 at 1184.592 kb on - strand, within HP15_1149 at 1184.642 kb on - strand, within HP15_1149 at 1184.793 kb on - strand, within HP15_1149 at 1184.793 kb on - strand, within HP15_1149 at 1184.851 kb on + strand at 1184.922 kb on + strand at 1184.932 kb on + strand at 1184.940 kb on - strand at 1184.940 kb on - strand at 1184.941 kb on + strand at 1185.041 kb on - strand at 1185.425 kb on + strand, within HP15_1150 at 1185.493 kb on - strand, within HP15_1150 at 1185.499 kb on + strand, within HP15_1150 at 1185.501 kb on + strand, within HP15_1150 at 1185.579 kb on - strand, within HP15_1150 at 1185.614 kb on - strand, within HP15_1150 at 1185.670 kb on + strand, within HP15_1150 at 1185.691 kb on + strand, within HP15_1150 at 1185.724 kb on - strand, within HP15_1150 at 1185.749 kb on + strand, within HP15_1150 at 1185.842 kb on + strand, within HP15_1150
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.064 mg/ml remove 1,183,081 + HP15_1148 0.54 +0.8 1,183,150 + HP15_1148 0.58 -0.4 1,183,298 + HP15_1148 0.67 -0.7 1,183,385 - HP15_1148 0.72 +0.3 1,183,422 + HP15_1148 0.74 -0.3 1,183,485 + HP15_1148 0.78 -1.1 1,183,532 + HP15_1148 0.80 +0.9 1,183,537 - HP15_1148 0.81 -3.5 1,183,546 + HP15_1148 0.81 -0.6 1,183,578 + HP15_1148 0.83 +2.2 1,183,629 + HP15_1148 0.86 +0.2 1,183,758 + +0.3 1,183,821 + +0.0 1,183,821 + +0.4 1,183,829 - -1.1 1,183,830 - +0.3 1,183,847 - +1.2 1,183,956 - -0.1 1,184,068 - HP15_1149 0.14 +0.0 1,184,068 - HP15_1149 0.14 -3.2 1,184,154 - HP15_1149 0.22 +0.5 1,184,174 - HP15_1149 0.24 +0.8 1,184,182 + HP15_1149 0.25 -1.7 1,184,552 + HP15_1149 0.63 +0.2 1,184,570 - HP15_1149 0.64 +1.2 1,184,592 - HP15_1149 0.67 +2.5 1,184,642 - HP15_1149 0.72 +0.5 1,184,793 - HP15_1149 0.87 +0.8 1,184,793 - HP15_1149 0.87 +0.7 1,184,851 + +0.5 1,184,922 + +0.4 1,184,932 + -1.0 1,184,940 - +0.7 1,184,940 - +1.0 1,184,941 + -1.5 1,185,041 - +0.2 1,185,425 + HP15_1150 0.46 +0.3 1,185,493 - HP15_1150 0.52 -1.0 1,185,499 + HP15_1150 0.53 -0.1 1,185,501 + HP15_1150 0.53 +1.3 1,185,579 - HP15_1150 0.61 +0.9 1,185,614 - HP15_1150 0.64 +0.8 1,185,670 + HP15_1150 0.69 -0.1 1,185,691 + HP15_1150 0.71 -0.7 1,185,724 - HP15_1150 0.75 -1.3 1,185,749 + HP15_1150 0.77 +1.2 1,185,842 + HP15_1150 0.86 +0.3
Or see this region's nucleotide sequence