Strain Fitness in Shewanella amazonensis SB2B around Sama_2332

Experiment: L-Arginine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_2330 and Sama_2331 overlap by 8 nucleotidesSama_2331 and Sama_2332 overlap by 1 nucleotidesSama_2332 and Sama_2333 overlap by 20 nucleotidesSama_2333 and Sama_2334 overlap by 4 nucleotides Sama_2330: Sama_2330 - hypothetical protein (RefSeq), at 2,796,037 to 2,797,044 _2330 Sama_2331: Sama_2331 - N-acylneuraminate-9-phosphate synthase (RefSeq), at 2,797,037 to 2,798,035 _2331 Sama_2332: Sama_2332 - UDP-N-acetylglucosamine 2-epimerase (RefSeq), at 2,798,035 to 2,799,201 _2332 Sama_2333: Sama_2333 - hypothetical protein (RefSeq), at 2,799,182 to 2,800,171 _2333 Sama_2334: Sama_2334 - acetyltransferase (RefSeq), at 2,800,168 to 2,800,665 _2334 Position (kb) 2798 2799 2800Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2797.268 kb on + strand, within Sama_2331at 2797.280 kb on - strand, within Sama_2331at 2797.303 kb on + strand, within Sama_2331at 2797.426 kb on - strand, within Sama_2331at 2797.456 kb on - strand, within Sama_2331at 2797.456 kb on - strand, within Sama_2331at 2797.506 kb on + strand, within Sama_2331at 2797.536 kb on + strand, within Sama_2331at 2797.545 kb on + strand, within Sama_2331at 2797.545 kb on + strand, within Sama_2331at 2797.546 kb on - strand, within Sama_2331at 2797.584 kb on + strand, within Sama_2331at 2797.585 kb on - strand, within Sama_2331at 2797.590 kb on + strand, within Sama_2331at 2797.591 kb on - strand, within Sama_2331at 2797.630 kb on + strand, within Sama_2331at 2797.630 kb on + strand, within Sama_2331at 2797.630 kb on + strand, within Sama_2331at 2797.668 kb on + strand, within Sama_2331at 2797.668 kb on + strand, within Sama_2331at 2797.668 kb on + strand, within Sama_2331at 2797.668 kb on + strand, within Sama_2331at 2797.699 kb on + strand, within Sama_2331at 2797.699 kb on + strand, within Sama_2331at 2797.700 kb on - strand, within Sama_2331at 2797.700 kb on - strand, within Sama_2331at 2797.700 kb on - strand, within Sama_2331at 2797.700 kb on - strand, within Sama_2331at 2797.717 kb on + strand, within Sama_2331at 2797.894 kb on + strand, within Sama_2331at 2797.894 kb on + strand, within Sama_2331at 2797.894 kb on + strand, within Sama_2331at 2797.895 kb on - strand, within Sama_2331at 2797.898 kb on + strand, within Sama_2331at 2797.898 kb on + strand, within Sama_2331at 2797.898 kb on + strand, within Sama_2331at 2797.899 kb on - strand, within Sama_2331at 2797.899 kb on - strand, within Sama_2331at 2797.899 kb on - strand, within Sama_2331at 2797.900 kb on + strand, within Sama_2331at 2797.900 kb on + strand, within Sama_2331at 2797.901 kb on - strand, within Sama_2331at 2797.930 kb on + strand, within Sama_2331at 2797.930 kb on + strand, within Sama_2331at 2797.986 kb on + strandat 2797.986 kb on + strandat 2798.034 kb on - strandat 2798.129 kb on + strandat 2798.129 kb on + strandat 2798.129 kb on + strandat 2798.129 kb on + strandat 2798.324 kb on + strand, within Sama_2332at 2798.324 kb on + strand, within Sama_2332at 2798.324 kb on + strand, within Sama_2332at 2798.334 kb on - strand, within Sama_2332at 2798.348 kb on - strand, within Sama_2332at 2798.391 kb on - strand, within Sama_2332at 2798.391 kb on - strand, within Sama_2332at 2798.500 kb on + strand, within Sama_2332at 2798.500 kb on + strand, within Sama_2332at 2798.547 kb on + strand, within Sama_2332at 2798.621 kb on + strand, within Sama_2332at 2798.621 kb on + strand, within Sama_2332at 2798.621 kb on + strand, within Sama_2332at 2798.621 kb on + strand, within Sama_2332at 2798.621 kb on + strand, within Sama_2332at 2798.622 kb on - strand, within Sama_2332at 2798.622 kb on - strand, within Sama_2332at 2798.629 kb on - strand, within Sama_2332at 2798.655 kb on + strand, within Sama_2332at 2798.736 kb on - strand, within Sama_2332at 2798.797 kb on - strand, within Sama_2332at 2798.847 kb on + strand, within Sama_2332at 2798.883 kb on - strand, within Sama_2332at 2798.887 kb on + strand, within Sama_2332at 2798.888 kb on - strand, within Sama_2332at 2798.888 kb on - strand, within Sama_2332at 2798.903 kb on + strand, within Sama_2332at 2798.904 kb on - strand, within Sama_2332at 2798.908 kb on - strand, within Sama_2332at 2798.948 kb on + strand, within Sama_2332at 2798.952 kb on + strand, within Sama_2332at 2798.953 kb on - strand, within Sama_2332at 2799.005 kb on + strand, within Sama_2332at 2799.005 kb on + strand, within Sama_2332at 2799.044 kb on + strand, within Sama_2332at 2799.044 kb on + strand, within Sama_2332at 2799.114 kb on + strandat 2799.160 kb on - strandat 2799.165 kb on - strandat 2799.165 kb on - strandat 2799.202 kb on + strandat 2799.231 kb on + strandat 2799.248 kb on + strandat 2799.249 kb on - strandat 2799.251 kb on + strandat 2799.302 kb on - strand, within Sama_2333at 2799.310 kb on - strand, within Sama_2333at 2799.310 kb on - strand, within Sama_2333at 2799.427 kb on - strand, within Sama_2333at 2799.459 kb on - strand, within Sama_2333at 2799.507 kb on + strand, within Sama_2333at 2799.532 kb on - strand, within Sama_2333at 2799.568 kb on - strand, within Sama_2333at 2799.705 kb on - strand, within Sama_2333at 2799.765 kb on - strand, within Sama_2333at 2799.898 kb on + strand, within Sama_2333at 2799.940 kb on + strand, within Sama_2333at 2799.941 kb on - strand, within Sama_2333at 2799.941 kb on - strand, within Sama_2333at 2800.028 kb on - strand, within Sama_2333at 2800.031 kb on + strand, within Sama_2333at 2800.060 kb on + strand, within Sama_2333at 2800.077 kb on + strandat 2800.085 kb on - strandat 2800.089 kb on + strandat 2800.090 kb on - strandat 2800.096 kb on + strandat 2800.097 kb on - strandat 2800.132 kb on - strandat 2800.132 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (N)
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2,797,268 + Sama_2331 0.23 -0.7
2,797,280 - Sama_2331 0.24 +0.2
2,797,303 + Sama_2331 0.27 +1.7
2,797,426 - Sama_2331 0.39 +1.2
2,797,456 - Sama_2331 0.42 -0.3
2,797,456 - Sama_2331 0.42 +0.5
2,797,506 + Sama_2331 0.47 +0.2
2,797,536 + Sama_2331 0.50 +0.4
2,797,545 + Sama_2331 0.51 +0.2
2,797,545 + Sama_2331 0.51 -0.8
2,797,546 - Sama_2331 0.51 -1.2
2,797,584 + Sama_2331 0.55 +1.0
2,797,585 - Sama_2331 0.55 -0.4
2,797,590 + Sama_2331 0.55 -1.5
2,797,591 - Sama_2331 0.55 +1.3
2,797,630 + Sama_2331 0.59 +0.6
2,797,630 + Sama_2331 0.59 -1.0
2,797,630 + Sama_2331 0.59 -0.6
2,797,668 + Sama_2331 0.63 -1.1
2,797,668 + Sama_2331 0.63 -0.6
2,797,668 + Sama_2331 0.63 +1.6
2,797,668 + Sama_2331 0.63 +0.6
2,797,699 + Sama_2331 0.66 -1.5
2,797,699 + Sama_2331 0.66 +0.4
2,797,700 - Sama_2331 0.66 -0.2
2,797,700 - Sama_2331 0.66 -2.4
2,797,700 - Sama_2331 0.66 +0.0
2,797,700 - Sama_2331 0.66 -0.0
2,797,717 + Sama_2331 0.68 -0.3
2,797,894 + Sama_2331 0.86 +1.6
2,797,894 + Sama_2331 0.86 +1.4
2,797,894 + Sama_2331 0.86 -0.5
2,797,895 - Sama_2331 0.86 -0.6
2,797,898 + Sama_2331 0.86 +1.4
2,797,898 + Sama_2331 0.86 +2.4
2,797,898 + Sama_2331 0.86 -1.3
2,797,899 - Sama_2331 0.86 -1.4
2,797,899 - Sama_2331 0.86 +0.6
2,797,899 - Sama_2331 0.86 +1.3
2,797,900 + Sama_2331 0.86 -0.8
2,797,900 + Sama_2331 0.86 +0.9
2,797,901 - Sama_2331 0.86 -0.2
2,797,930 + Sama_2331 0.89 +0.7
2,797,930 + Sama_2331 0.89 +1.6
2,797,986 + +0.5
2,797,986 + -1.8
2,798,034 - -1.4
2,798,129 + -3.2
2,798,129 + -2.9
2,798,129 + -1.9
2,798,129 + -1.9
2,798,324 + Sama_2332 0.25 -1.6
2,798,324 + Sama_2332 0.25 -1.9
2,798,324 + Sama_2332 0.25 -3.3
2,798,334 - Sama_2332 0.26 -0.5
2,798,348 - Sama_2332 0.27 +0.4
2,798,391 - Sama_2332 0.31 -2.0
2,798,391 - Sama_2332 0.31 -0.0
2,798,500 + Sama_2332 0.40 -0.1
2,798,500 + Sama_2332 0.40 -2.3
2,798,547 + Sama_2332 0.44 -1.0
2,798,621 + Sama_2332 0.50 -2.9
2,798,621 + Sama_2332 0.50 -2.3
2,798,621 + Sama_2332 0.50 -3.2
2,798,621 + Sama_2332 0.50 -4.6
2,798,621 + Sama_2332 0.50 -2.6
2,798,622 - Sama_2332 0.50 -1.5
2,798,622 - Sama_2332 0.50 +0.4
2,798,629 - Sama_2332 0.51 -0.3
2,798,655 + Sama_2332 0.53 -3.6
2,798,736 - Sama_2332 0.60 -1.8
2,798,797 - Sama_2332 0.65 +0.1
2,798,847 + Sama_2332 0.70 -2.7
2,798,883 - Sama_2332 0.73 -0.6
2,798,887 + Sama_2332 0.73 -4.0
2,798,888 - Sama_2332 0.73 -1.5
2,798,888 - Sama_2332 0.73 -2.0
2,798,903 + Sama_2332 0.74 -4.1
2,798,904 - Sama_2332 0.74 -3.3
2,798,908 - Sama_2332 0.75 -1.3
2,798,948 + Sama_2332 0.78 -2.6
2,798,952 + Sama_2332 0.79 -1.5
2,798,953 - Sama_2332 0.79 -0.5
2,799,005 + Sama_2332 0.83 -1.5
2,799,005 + Sama_2332 0.83 -3.5
2,799,044 + Sama_2332 0.86 -1.4
2,799,044 + Sama_2332 0.86 -2.6
2,799,114 + -1.5
2,799,160 - +1.3
2,799,165 - -1.9
2,799,165 - -0.3
2,799,202 + -2.6
2,799,231 + +0.9
2,799,248 + +0.9
2,799,249 - -1.9
2,799,251 + -1.0
2,799,302 - Sama_2333 0.12 +0.2
2,799,310 - Sama_2333 0.13 +0.6
2,799,310 - Sama_2333 0.13 +0.7
2,799,427 - Sama_2333 0.25 +1.2
2,799,459 - Sama_2333 0.28 -2.0
2,799,507 + Sama_2333 0.33 -0.9
2,799,532 - Sama_2333 0.35 -0.0
2,799,568 - Sama_2333 0.39 +1.1
2,799,705 - Sama_2333 0.53 +1.9
2,799,765 - Sama_2333 0.59 +0.6
2,799,898 + Sama_2333 0.72 -1.6
2,799,940 + Sama_2333 0.77 -1.6
2,799,941 - Sama_2333 0.77 -0.3
2,799,941 - Sama_2333 0.77 +0.9
2,800,028 - Sama_2333 0.85 -0.1
2,800,031 + Sama_2333 0.86 +0.1
2,800,060 + Sama_2333 0.89 -1.6
2,800,077 + -1.2
2,800,085 - +1.2
2,800,089 + -0.6
2,800,090 - +1.7
2,800,096 + -1.2
2,800,097 - +0.1
2,800,132 - +0.2
2,800,132 - +0.6

Or see this region's nucleotide sequence