Experiment: L-Arginine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_1133 and purU are separated by 159 nucleotides purU and Sama_1135 are separated by 40 nucleotides Sama_1135 and dapD are separated by 264 nucleotides
Sama_1133: Sama_1133 - PTS system, glucose-specific IIBC component (RefSeq), at 1,381,642 to 1,383,099
_1133
Sama_1134: purU - formyltetrahydrofolate deformylase (RefSeq), at 1,383,259 to 1,384,104
purU
Sama_1135: Sama_1135 - hypothetical protein (RefSeq), at 1,384,145 to 1,384,492
_1135
Sama_1136: dapD - 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase (RefSeq), at 1,384,757 to 1,385,581
dapD
Position (kb)
1383
1384
1385 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1382.272 kb on + strand, within Sama_1133 at 1382.272 kb on + strand, within Sama_1133 at 1382.277 kb on + strand, within Sama_1133 at 1382.336 kb on - strand, within Sama_1133 at 1382.353 kb on + strand, within Sama_1133 at 1382.353 kb on + strand, within Sama_1133 at 1382.353 kb on + strand, within Sama_1133 at 1382.353 kb on + strand, within Sama_1133 at 1382.354 kb on - strand, within Sama_1133 at 1382.354 kb on - strand, within Sama_1133 at 1382.354 kb on - strand, within Sama_1133 at 1382.376 kb on - strand, within Sama_1133 at 1382.396 kb on - strand, within Sama_1133 at 1382.445 kb on + strand, within Sama_1133 at 1382.480 kb on + strand, within Sama_1133 at 1382.498 kb on + strand, within Sama_1133 at 1382.531 kb on + strand, within Sama_1133 at 1382.531 kb on + strand, within Sama_1133 at 1382.531 kb on + strand, within Sama_1133 at 1382.531 kb on + strand, within Sama_1133 at 1382.531 kb on + strand, within Sama_1133 at 1382.531 kb on + strand, within Sama_1133 at 1382.531 kb on + strand, within Sama_1133 at 1382.644 kb on + strand, within Sama_1133 at 1382.644 kb on + strand, within Sama_1133 at 1382.667 kb on + strand, within Sama_1133 at 1382.667 kb on + strand, within Sama_1133 at 1382.667 kb on + strand, within Sama_1133 at 1382.667 kb on + strand, within Sama_1133 at 1382.667 kb on + strand, within Sama_1133 at 1382.667 kb on + strand, within Sama_1133 at 1382.668 kb on - strand, within Sama_1133 at 1382.734 kb on - strand, within Sama_1133 at 1382.736 kb on + strand, within Sama_1133 at 1382.736 kb on + strand, within Sama_1133 at 1382.737 kb on - strand, within Sama_1133 at 1382.779 kb on + strand, within Sama_1133 at 1382.780 kb on - strand, within Sama_1133 at 1382.802 kb on + strand, within Sama_1133 at 1382.802 kb on + strand, within Sama_1133 at 1382.803 kb on - strand, within Sama_1133 at 1382.915 kb on + strand, within Sama_1133 at 1382.915 kb on + strand, within Sama_1133 at 1382.915 kb on + strand, within Sama_1133 at 1382.916 kb on - strand, within Sama_1133 at 1382.942 kb on + strand, within Sama_1133 at 1382.966 kb on + strand at 1382.966 kb on + strand at 1382.966 kb on + strand at 1382.967 kb on - strand at 1382.982 kb on - strand at 1383.009 kb on - strand at 1383.043 kb on - strand at 1383.059 kb on + strand at 1383.060 kb on - strand at 1383.087 kb on + strand at 1383.088 kb on - strand at 1383.088 kb on - strand at 1383.094 kb on - strand at 1383.210 kb on + strand at 1383.239 kb on - strand at 1383.247 kb on + strand at 1383.387 kb on + strand, within purU at 1383.390 kb on + strand, within purU at 1383.390 kb on + strand, within purU at 1383.414 kb on + strand, within purU at 1383.434 kb on + strand, within purU at 1383.434 kb on + strand, within purU at 1383.434 kb on + strand, within purU at 1383.435 kb on - strand, within purU at 1383.498 kb on + strand, within purU at 1383.499 kb on - strand, within purU at 1383.499 kb on - strand, within purU at 1383.513 kb on + strand, within purU at 1383.513 kb on + strand, within purU at 1383.563 kb on + strand, within purU at 1383.563 kb on + strand, within purU at 1383.563 kb on + strand, within purU at 1383.563 kb on + strand, within purU at 1383.564 kb on - strand, within purU at 1383.564 kb on - strand, within purU at 1383.577 kb on + strand, within purU at 1383.577 kb on + strand, within purU at 1383.577 kb on + strand, within purU at 1383.577 kb on + strand, within purU at 1383.578 kb on - strand, within purU at 1383.578 kb on - strand, within purU at 1383.578 kb on - strand, within purU at 1383.580 kb on + strand, within purU at 1383.581 kb on - strand, within purU at 1383.600 kb on + strand, within purU at 1383.600 kb on + strand, within purU at 1383.619 kb on - strand, within purU at 1383.622 kb on + strand, within purU at 1383.627 kb on + strand, within purU at 1383.670 kb on + strand, within purU at 1383.670 kb on + strand, within purU at 1383.671 kb on - strand, within purU at 1383.671 kb on - strand, within purU at 1383.671 kb on - strand, within purU at 1383.671 kb on - strand, within purU at 1383.737 kb on - strand, within purU at 1383.748 kb on + strand, within purU at 1383.768 kb on + strand, within purU at 1383.822 kb on + strand, within purU at 1383.822 kb on + strand, within purU at 1383.822 kb on + strand, within purU at 1383.822 kb on + strand, within purU at 1383.823 kb on - strand, within purU at 1383.849 kb on + strand, within purU at 1383.896 kb on + strand, within purU at 1383.925 kb on - strand, within purU at 1383.945 kb on + strand, within purU at 1383.945 kb on + strand, within purU at 1383.945 kb on + strand, within purU at 1383.946 kb on - strand, within purU at 1383.982 kb on + strand, within purU at 1383.982 kb on + strand, within purU at 1383.982 kb on + strand, within purU at 1383.982 kb on + strand, within purU at 1383.983 kb on - strand, within purU at 1383.983 kb on - strand, within purU at 1383.983 kb on - strand, within purU at 1384.147 kb on - strand at 1384.147 kb on - strand at 1384.160 kb on + strand at 1384.164 kb on + strand at 1384.165 kb on - strand at 1384.165 kb on - strand at 1384.165 kb on - strand at 1384.165 kb on - strand at 1384.165 kb on - strand at 1384.165 kb on - strand at 1384.165 kb on - strand at 1384.165 kb on - strand at 1384.208 kb on + strand, within Sama_1135 at 1384.208 kb on + strand, within Sama_1135 at 1384.208 kb on + strand, within Sama_1135 at 1384.208 kb on + strand, within Sama_1135 at 1384.208 kb on + strand, within Sama_1135 at 1384.209 kb on - strand, within Sama_1135 at 1384.209 kb on - strand, within Sama_1135 at 1384.209 kb on - strand, within Sama_1135 at 1384.214 kb on - strand, within Sama_1135 at 1384.279 kb on - strand, within Sama_1135 at 1384.279 kb on - strand, within Sama_1135 at 1384.387 kb on + strand, within Sama_1135 at 1384.387 kb on + strand, within Sama_1135 at 1384.388 kb on - strand, within Sama_1135 at 1384.391 kb on + strand, within Sama_1135 at 1384.392 kb on - strand, within Sama_1135 at 1384.457 kb on + strand, within Sama_1135 at 1384.457 kb on + strand, within Sama_1135 at 1384.458 kb on - strand at 1384.458 kb on - strand at 1384.458 kb on - strand at 1384.484 kb on + strand at 1384.485 kb on - strand at 1384.485 kb on - strand at 1384.510 kb on + strand at 1384.511 kb on - strand at 1384.511 kb on - strand at 1384.511 kb on - strand at 1384.527 kb on + strand at 1384.527 kb on + strand at 1384.527 kb on + strand at 1384.528 kb on - strand at 1384.542 kb on - strand at 1384.603 kb on + strand at 1384.603 kb on + strand at 1384.604 kb on - strand at 1384.604 kb on - strand at 1384.604 kb on - strand at 1384.604 kb on - strand at 1384.604 kb on - strand at 1384.604 kb on - strand at 1384.604 kb on - strand at 1384.687 kb on + strand at 1384.752 kb on - strand at 1384.752 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arginine (N) remove 1,382,272 + Sama_1133 0.43 -1.6 1,382,272 + Sama_1133 0.43 -0.5 1,382,277 + Sama_1133 0.44 -0.9 1,382,336 - Sama_1133 0.48 -1.0 1,382,353 + Sama_1133 0.49 -1.3 1,382,353 + Sama_1133 0.49 -1.2 1,382,353 + Sama_1133 0.49 -1.2 1,382,353 + Sama_1133 0.49 -2.1 1,382,354 - Sama_1133 0.49 -0.2 1,382,354 - Sama_1133 0.49 -1.4 1,382,354 - Sama_1133 0.49 -0.9 1,382,376 - Sama_1133 0.50 -0.8 1,382,396 - Sama_1133 0.52 +0.2 1,382,445 + Sama_1133 0.55 -0.3 1,382,480 + Sama_1133 0.57 -0.2 1,382,498 + Sama_1133 0.59 -0.4 1,382,531 + Sama_1133 0.61 +1.1 1,382,531 + Sama_1133 0.61 -1.0 1,382,531 + Sama_1133 0.61 +0.8 1,382,531 + Sama_1133 0.61 -0.4 1,382,531 + Sama_1133 0.61 +0.5 1,382,531 + Sama_1133 0.61 -1.0 1,382,531 + Sama_1133 0.61 +0.3 1,382,644 + Sama_1133 0.69 +0.6 1,382,644 + Sama_1133 0.69 -2.8 1,382,667 + Sama_1133 0.70 -0.2 1,382,667 + Sama_1133 0.70 -1.2 1,382,667 + Sama_1133 0.70 -1.4 1,382,667 + Sama_1133 0.70 +0.4 1,382,667 + Sama_1133 0.70 -2.6 1,382,667 + Sama_1133 0.70 -1.1 1,382,668 - Sama_1133 0.70 -2.4 1,382,734 - Sama_1133 0.75 -0.3 1,382,736 + Sama_1133 0.75 +0.1 1,382,736 + Sama_1133 0.75 +0.7 1,382,737 - Sama_1133 0.75 +0.9 1,382,779 + Sama_1133 0.78 -0.1 1,382,780 - Sama_1133 0.78 -0.3 1,382,802 + Sama_1133 0.80 -1.6 1,382,802 + Sama_1133 0.80 -1.9 1,382,803 - Sama_1133 0.80 -0.2 1,382,915 + Sama_1133 0.87 -1.5 1,382,915 + Sama_1133 0.87 +1.5 1,382,915 + Sama_1133 0.87 +0.2 1,382,916 - Sama_1133 0.87 -0.3 1,382,942 + Sama_1133 0.89 -0.6 1,382,966 + -1.0 1,382,966 + -0.8 1,382,966 + +1.3 1,382,967 - -0.8 1,382,982 - -0.7 1,383,009 - -0.6 1,383,043 - +2.0 1,383,059 + -1.9 1,383,060 - -0.6 1,383,087 + +1.2 1,383,088 - +2.1 1,383,088 - -1.9 1,383,094 - -3.1 1,383,210 + +0.8 1,383,239 - -0.4 1,383,247 + -2.3 1,383,387 + purU Sama_1134 0.15 -1.9 1,383,390 + purU Sama_1134 0.15 +0.2 1,383,390 + purU Sama_1134 0.15 +0.5 1,383,414 + purU Sama_1134 0.18 +0.6 1,383,434 + purU Sama_1134 0.21 -0.4 1,383,434 + purU Sama_1134 0.21 +0.0 1,383,434 + purU Sama_1134 0.21 -0.9 1,383,435 - purU Sama_1134 0.21 +0.3 1,383,498 + purU Sama_1134 0.28 +0.3 1,383,499 - purU Sama_1134 0.28 -1.2 1,383,499 - purU Sama_1134 0.28 +0.7 1,383,513 + purU Sama_1134 0.30 +0.6 1,383,513 + purU Sama_1134 0.30 -2.3 1,383,563 + purU Sama_1134 0.36 +0.6 1,383,563 + purU Sama_1134 0.36 -2.8 1,383,563 + purU Sama_1134 0.36 +0.2 1,383,563 + purU Sama_1134 0.36 -2.2 1,383,564 - purU Sama_1134 0.36 -2.5 1,383,564 - purU Sama_1134 0.36 -2.1 1,383,577 + purU Sama_1134 0.38 +1.1 1,383,577 + purU Sama_1134 0.38 +0.7 1,383,577 + purU Sama_1134 0.38 -2.2 1,383,577 + purU Sama_1134 0.38 -0.1 1,383,578 - purU Sama_1134 0.38 -1.4 1,383,578 - purU Sama_1134 0.38 +0.6 1,383,578 - purU Sama_1134 0.38 -0.3 1,383,580 + purU Sama_1134 0.38 -0.9 1,383,581 - purU Sama_1134 0.38 +0.7 1,383,600 + purU Sama_1134 0.40 +0.4 1,383,600 + purU Sama_1134 0.40 -2.6 1,383,619 - purU Sama_1134 0.43 -0.9 1,383,622 + purU Sama_1134 0.43 -2.4 1,383,627 + purU Sama_1134 0.43 -0.4 1,383,670 + purU Sama_1134 0.49 -2.5 1,383,670 + purU Sama_1134 0.49 -1.1 1,383,671 - purU Sama_1134 0.49 -0.3 1,383,671 - purU Sama_1134 0.49 +0.4 1,383,671 - purU Sama_1134 0.49 -0.9 1,383,671 - purU Sama_1134 0.49 +0.6 1,383,737 - purU Sama_1134 0.57 -0.8 1,383,748 + purU Sama_1134 0.58 +0.4 1,383,768 + purU Sama_1134 0.60 -2.5 1,383,822 + purU Sama_1134 0.67 +1.0 1,383,822 + purU Sama_1134 0.67 -1.6 1,383,822 + purU Sama_1134 0.67 -1.5 1,383,822 + purU Sama_1134 0.67 -0.4 1,383,823 - purU Sama_1134 0.67 -0.2 1,383,849 + purU Sama_1134 0.70 -0.0 1,383,896 + purU Sama_1134 0.75 -1.4 1,383,925 - purU Sama_1134 0.79 -0.0 1,383,945 + purU Sama_1134 0.81 -1.0 1,383,945 + purU Sama_1134 0.81 +0.1 1,383,945 + purU Sama_1134 0.81 -0.1 1,383,946 - purU Sama_1134 0.81 -0.3 1,383,982 + purU Sama_1134 0.85 +1.7 1,383,982 + purU Sama_1134 0.85 -0.8 1,383,982 + purU Sama_1134 0.85 -0.7 1,383,982 + purU Sama_1134 0.85 -0.9 1,383,983 - purU Sama_1134 0.86 +0.4 1,383,983 - purU Sama_1134 0.86 +0.1 1,383,983 - purU Sama_1134 0.86 -1.1 1,384,147 - -3.2 1,384,147 - -1.8 1,384,160 + +0.9 1,384,164 + +1.4 1,384,165 - +2.2 1,384,165 - -0.7 1,384,165 - +0.3 1,384,165 - -0.7 1,384,165 - -0.9 1,384,165 - -0.9 1,384,165 - -0.2 1,384,165 - -1.4 1,384,208 + Sama_1135 0.18 +0.5 1,384,208 + Sama_1135 0.18 -1.9 1,384,208 + Sama_1135 0.18 -1.4 1,384,208 + Sama_1135 0.18 +0.4 1,384,208 + Sama_1135 0.18 +1.2 1,384,209 - Sama_1135 0.18 -1.7 1,384,209 - Sama_1135 0.18 +0.6 1,384,209 - Sama_1135 0.18 +0.8 1,384,214 - Sama_1135 0.20 -0.5 1,384,279 - Sama_1135 0.39 -0.5 1,384,279 - Sama_1135 0.39 +0.9 1,384,387 + Sama_1135 0.70 -1.4 1,384,387 + Sama_1135 0.70 -1.1 1,384,388 - Sama_1135 0.70 -0.1 1,384,391 + Sama_1135 0.71 +0.1 1,384,392 - Sama_1135 0.71 +0.9 1,384,457 + Sama_1135 0.90 -0.8 1,384,457 + Sama_1135 0.90 +0.5 1,384,458 - -1.1 1,384,458 - -0.3 1,384,458 - +1.1 1,384,484 + +0.3 1,384,485 - -1.2 1,384,485 - +0.1 1,384,510 + -0.9 1,384,511 - -1.5 1,384,511 - -1.4 1,384,511 - -1.4 1,384,527 + +1.4 1,384,527 + -0.8 1,384,527 + -0.6 1,384,528 - -1.8 1,384,542 - -0.3 1,384,603 + -0.5 1,384,603 + -1.4 1,384,604 - +1.7 1,384,604 - -0.7 1,384,604 - -1.6 1,384,604 - +0.4 1,384,604 - +1.1 1,384,604 - +0.3 1,384,604 - +1.3 1,384,687 + -2.2 1,384,752 - +0.1 1,384,752 - -0.6
Or see this region's nucleotide sequence